BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0266.0008.p (234 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3IJK7.1 C3IJK7_BACTU Metallo-beta-lactamase 346 1e-93 C3DJY2.1 C3DJY2_BACTS Metallo-beta-lactamase 343 7e-93 C2UDW6.1 C2UDW6_BACCE Metallo-beta-lactamase 343 8e-93 C3I0V2.1 C3I0V2_BACTU Metallo-beta-lactamase 343 9e-93 C3HIL9.1 C3HIL9_BACTU Metallo-beta-lactamase 342 2e-92 >C3IJK7.1 C3IJK7_BACTU Metallo-beta-lactamase Length = 228 Score = 346 bits (887), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 154/228 (67%), Positives = 191/228 (83%) Query: 7 MKIIELPIEFEYNGQPNYIYPSLIVSENELTLVDTGYPGFLPFIEKEIVAHGYDMMNLKN 66 MKIIELPIEFE+NGQ IYPSLI+ NELTLVDTGYP FLP IE I+ HGY+M NLKN Sbjct: 1 MKIIELPIEFEFNGQKQCIYPSLIILHNELTLVDTGYPSFLPLIENAILKHGYEMKNLKN 60 Query: 67 ILITHYDDDHIGSLYAFKAKYPSVTIMASGVEAEGISGKVKPERLAQAEAMLEHMPEEQQ 126 I+ITHYDDDHIG+LY FK KYP++ ++AS +E+ ISG ++ ERLAQAE MLE MP E++ Sbjct: 61 IIITHYDDDHIGALYDFKMKYPNINVIASEIESNYISGDIRSERLAQAEKMLERMPNEEK 120 Query: 127 DFGHWFVQQLKSLQHVSVDQTVHDGEWILNQQCKVIATPGHTSGHISLYFPELSSVITGD 186 +FG WF+QQLK+++H+SVD+ VHDG+ ILN +C+++ATPGHTSGHISLYFP L VITGD Sbjct: 121 EFGKWFIQQLKNIKHISVDEKVHDGQMILNNECQIVATPGHTSGHISLYFPNLDCVITGD 180 Query: 187 AAVRDGDELIIANPDFCLDRERADQSLNVLQNLQAKSYYCYHGGSLTF 234 AAV++ EL+IANPDFCLD ERA++SLN +++L+A YYCYHGG LT Sbjct: 181 AAVQENRELVIANPDFCLDIERAEKSLNRIKSLKAAQYYCYHGGKLTL 228 >C3DJY2.1 C3DJY2_BACTS Metallo-beta-lactamase Length = 228 Score = 343 bits (880), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 153/228 (67%), Positives = 190/228 (83%) Query: 7 MKIIELPIEFEYNGQPNYIYPSLIVSENELTLVDTGYPGFLPFIEKEIVAHGYDMMNLKN 66 MKIIELPIEFE+NGQ IYPSLI+ NELTLVDTGY FLP IE I+ HGY+M NLKN Sbjct: 1 MKIIELPIEFEFNGQKQCIYPSLIILHNELTLVDTGYTSFLPLIENAILKHGYEMKNLKN 60 Query: 67 ILITHYDDDHIGSLYAFKAKYPSVTIMASGVEAEGISGKVKPERLAQAEAMLEHMPEEQQ 126 I+ITHYDDDHIG+LY FK KYP++ ++AS +E+ ISG ++ ERLAQAE MLE MP E++ Sbjct: 61 IIITHYDDDHIGALYDFKMKYPNINVIASEIESNYISGDIRSERLAQAEKMLERMPNEEK 120 Query: 127 DFGHWFVQQLKSLQHVSVDQTVHDGEWILNQQCKVIATPGHTSGHISLYFPELSSVITGD 186 +FG WF+QQLK+++H+SVD+ VHDG+ ILN +C+++ATPGHTSGHISLYFP L VITGD Sbjct: 121 EFGKWFIQQLKNIKHISVDEKVHDGQMILNNECQIVATPGHTSGHISLYFPNLDCVITGD 180 Query: 187 AAVRDGDELIIANPDFCLDRERADQSLNVLQNLQAKSYYCYHGGSLTF 234 AAV++ EL+IANPDFCLD ERA++SLN +++L+A YYCYHGG LT Sbjct: 181 AAVQENRELVIANPDFCLDIERAEKSLNRIKSLKAAQYYCYHGGKLTL 228 >C2UDW6.1 C2UDW6_BACCE Metallo-beta-lactamase Length = 228 Score = 343 bits (880), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 153/227 (67%), Positives = 190/227 (83%) Query: 7 MKIIELPIEFEYNGQPNYIYPSLIVSENELTLVDTGYPGFLPFIEKEIVAHGYDMMNLKN 66 MKIIELPIEFE+NGQ IYPSLI+ NELTLVDTGYP FLP IE I+ HGY+M NLKN Sbjct: 1 MKIIELPIEFEFNGQKQCIYPSLIILHNELTLVDTGYPSFLPLIENAILKHGYEMKNLKN 60 Query: 67 ILITHYDDDHIGSLYAFKAKYPSVTIMASGVEAEGISGKVKPERLAQAEAMLEHMPEEQQ 126 I+ITHYDDDHIG++Y FK KYP++ ++AS +E+ I+G +K ERL QAE MLE MP E++ Sbjct: 61 IIITHYDDDHIGAVYDFKVKYPNINVIASEIESNYINGDIKSERLVQAEEMLERMPNEEK 120 Query: 127 DFGHWFVQQLKSLQHVSVDQTVHDGEWILNQQCKVIATPGHTSGHISLYFPELSSVITGD 186 +FG WF+QQLK+++H+SVD+ VHDG+ ILN +C+V+ATPGHTSGHISLYFP L VITGD Sbjct: 121 EFGKWFIQQLKNIKHISVDEKVHDGQMILNNECQVVATPGHTSGHISLYFPNLDCVITGD 180 Query: 187 AAVRDGDELIIANPDFCLDRERADQSLNVLQNLQAKSYYCYHGGSLT 233 AAV++ EL+IANP+FCLD ERA+QSLN +++L+A YYCYHGG LT Sbjct: 181 AAVQENQELVIANPNFCLDIERAEQSLNRIKSLKAAQYYCYHGGKLT 227 >C3I0V2.1 C3I0V2_BACTU Metallo-beta-lactamase Length = 228 Score = 343 bits (879), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 153/227 (67%), Positives = 189/227 (83%) Query: 7 MKIIELPIEFEYNGQPNYIYPSLIVSENELTLVDTGYPGFLPFIEKEIVAHGYDMMNLKN 66 MKIIELPIEFE+NGQ IYPSLI+ NELTLVDTGYP FLP IE I+ HGY+M NLKN Sbjct: 1 MKIIELPIEFEFNGQKQCIYPSLIILHNELTLVDTGYPSFLPLIENAILKHGYEMKNLKN 60 Query: 67 ILITHYDDDHIGSLYAFKAKYPSVTIMASGVEAEGISGKVKPERLAQAEAMLEHMPEEQQ 126 I+ITHYDDDHIG+LY FK KYP++ ++AS +E+ I+G +K ERL QAE MLE MP E++ Sbjct: 61 IIITHYDDDHIGALYDFKVKYPNINVIASEIESNNINGDIKSERLVQAEEMLERMPNEEK 120 Query: 127 DFGHWFVQQLKSLQHVSVDQTVHDGEWILNQQCKVIATPGHTSGHISLYFPELSSVITGD 186 +FG WF+QQLK+++H+ VD+ VHDG+ ILN +C+V+ATPGHTSGHISLYFP L VITGD Sbjct: 121 EFGKWFIQQLKNIKHIFVDEKVHDGQMILNNECQVVATPGHTSGHISLYFPNLDCVITGD 180 Query: 187 AAVRDGDELIIANPDFCLDRERADQSLNVLQNLQAKSYYCYHGGSLT 233 AAV++ EL+IANP+FCLD ERA+QSLN +++L+A YYCYHGG LT Sbjct: 181 AAVQENRELVIANPNFCLDIERAEQSLNRIKSLKAAQYYCYHGGKLT 227 >C3HIL9.1 C3HIL9_BACTU Metallo-beta-lactamase Length = 228 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 154/227 (67%), Positives = 189/227 (83%) Query: 7 MKIIELPIEFEYNGQPNYIYPSLIVSENELTLVDTGYPGFLPFIEKEIVAHGYDMMNLKN 66 MKIIELPIEFE+NGQ IYPSLI+ NELTLVDTGY FLP IE EI+ HGY+M NLKN Sbjct: 1 MKIIELPIEFEFNGQKQCIYPSLIILHNELTLVDTGYTNFLPLIENEILKHGYEMKNLKN 60 Query: 67 ILITHYDDDHIGSLYAFKAKYPSVTIMASGVEAEGISGKVKPERLAQAEAMLEHMPEEQQ 126 I+ITHYDDDHIGSLY FK KYP V I+AS +E+ I+G +K ERL QAE MLEHMP E++ Sbjct: 61 IIITHYDDDHIGSLYDFKVKYPQVNIIASEIESGYINGDIKSERLVQAEEMLEHMPNEEK 120 Query: 127 DFGHWFVQQLKSLQHVSVDQTVHDGEWILNQQCKVIATPGHTSGHISLYFPELSSVITGD 186 +FG WF+Q+LK+++H+SVD+ VHDG+ ILN +C+++ATPGHTSGHISLYFP L VITGD Sbjct: 121 EFGKWFIQELKNIRHISVDEKVHDGQMILNNECQIVATPGHTSGHISLYFPNLDCVITGD 180 Query: 187 AAVRDGDELIIANPDFCLDRERADQSLNVLQNLQAKSYYCYHGGSLT 233 AAV++ EL+IANP+FCLD E+A++SL ++NL+A YYCYHGG LT Sbjct: 181 AAVQENRELVIANPNFCLDIEKAEESLKRIKNLKAARYYCYHGGKLT 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,467,109,090 Number of extensions: 59594668 Number of successful extensions: 160581 Number of sequences better than 1.0e-05: 213 Number of HSP's gapped: 160870 Number of HSP's successfully gapped: 214 Length of query: 234 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 103 Effective length of database: 1,826,543,238 Effective search space: 188133953514 Effective search space used: 188133953514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)