BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0266.0006.p (211 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65IM4.1 Q65IM4_BACLD Putative uncharacterized protein 172 2e-41 Q3EM60.1 Q3EM60_BACTI Putative uncharacterized protein 157 7e-37 C3ISQ7.1 C3ISQ7_BACTU Putative uncharacterized protein 157 7e-37 C3DMN0.1 C3DMN0_BACTS Putative uncharacterized protein 157 7e-37 B7IRE8.1 B7IRE8_BACC2 Putative uncharacterized protein 155 2e-36 >Q65IM4.1 Q65IM4_BACLD Putative uncharacterized protein Length = 212 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/213 (43%), Positives = 123/213 (57%), Gaps = 5/213 (2%) Query: 3 MNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFSNF 62 MN EIQG YD +FSLG CL A QL + R G DWV + +L + L+RNRF F Sbjct: 1 MNLKEIQGEYDAVFSLGHLCLTALQLRKMNKRPYAGPFDWVGTSSLPDLCRLIRNRFEGF 60 Query: 63 MELPNLAITG----INEKAKCYIVRDAAYYIFSHHDFPLNQNTPTQLVSYPELREKIARR 118 M NL +TG + K V D Y I S HDF ++NT L +Y E+ EK RR Sbjct: 61 MNPINLRVTGYSTGVATKDPFISVTDDYYCIDSAHDFKADRNTLDNLATYHEVIEKFNRR 120 Query: 119 VPRFLETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVINQAPVGGIVETPWP 178 RFLE +A R+LF+RT GT+ E EL +VL +LV+ +F+VL+IN V GIVE WP Sbjct: 121 FNRFLEKTSTAKRVLFVRTSGTMQEAKELEEVLSDLVTNDFSVLLINHTNVSGIVENHWP 180 Query: 179 FPNVCALQIPGVPDEFHDNDDLWKNILDRFTVR 211 NVCA+++P + + ND W+ + T+R Sbjct: 181 LKNVCAVELPD-QEIWQSNDPYWREMFQGITIR 212 >Q3EM60.1 Q3EM60_BACTI Putative uncharacterized protein Length = 227 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 17/226 (7%) Query: 1 MDMNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFS 60 M MN ++IQ +Y +I SLG C +Q+ RH LR G LDW P+LS V+ LL+NRF Sbjct: 2 MRMNLDDIQKSYGVIVSLGGLCQVTNQIKRHHLRTFSGPLDWFYYPSLSDVNRLLQNRFE 61 Query: 61 NFMELPNLAITG----------INEKAK-----CYIVRDAAYYIFSHHDFPLNQNTPTQL 105 FM+L N+ I G + + K Y ++D Y FS HDFP++ + Sbjct: 62 KFMKLENMVIEGSESYGLIESEFDNQTKWAERITYCIKDTYYNCFSMHDFPIDSEKDWK- 120 Query: 106 VSYPELREKIARRVPRFLETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVIN 165 +YP + K+ R+ RFLE + S+ ILFIR G E EL +VL E+ + +FN+L++N Sbjct: 121 STYPSFKAKLDTRINRFLEKINSSESILFIRIWGNRDEAVELKNVLSEITNKDFNILIVN 180 Query: 166 -QAPVGGIVETPWPFPNVCALQIPGVPDEFHDNDDLWKNILDRFTV 210 + + IVE W VC++++P D + +D W IL++ T+ Sbjct: 181 FKEDISNIVEQNWGISRVCSIELPRYQDRWEGDDSDWNYILNKITL 226 >C3ISQ7.1 C3ISQ7_BACTU Putative uncharacterized protein Length = 227 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 17/226 (7%) Query: 1 MDMNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFS 60 M MN ++IQ +Y +I SLG C +Q+ RH LR G LDW P+LS V+ LL+NRF Sbjct: 2 MRMNLDDIQKSYGVIVSLGGLCQVTNQIKRHHLRTFSGPLDWFYYPSLSDVNRLLQNRFE 61 Query: 61 NFMELPNLAITG----------INEKAK-----CYIVRDAAYYIFSHHDFPLNQNTPTQL 105 FM+L N+ I G + + K Y ++D Y FS HDFP++ + Sbjct: 62 KFMKLENMVIEGSESYGLIESEFDNQTKWAERITYCIKDTYYNCFSMHDFPIDSEKDWK- 120 Query: 106 VSYPELREKIARRVPRFLETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVIN 165 +YP + K+ R+ RFLE + S+ ILFIR G E EL +VL E+ + +FN+L++N Sbjct: 121 STYPSFKAKLDTRINRFLEKINSSESILFIRIWGNRDEAVELKNVLSEITNKDFNILIVN 180 Query: 166 -QAPVGGIVETPWPFPNVCALQIPGVPDEFHDNDDLWKNILDRFTV 210 + + IVE W VC++++P D + +D W IL++ T+ Sbjct: 181 FKEDISNIVEQNWGISRVCSIELPRYQDRWEGDDSDWNYILNKITL 226 >C3DMN0.1 C3DMN0_BACTS Putative uncharacterized protein Length = 227 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 17/226 (7%) Query: 1 MDMNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFS 60 M MN ++IQ +Y +I SLG C +Q+ RH LR G LDW P+LS V+ LL+NRF Sbjct: 2 MRMNLDDIQKSYGVIVSLGGLCQVTNQIKRHHLRTFSGPLDWFYYPSLSDVNRLLQNRFE 61 Query: 61 NFMELPNLAITG----------INEKAK-----CYIVRDAAYYIFSHHDFPLNQNTPTQL 105 FM+L N+ I G + + K Y ++D Y FS HDFP++ + Sbjct: 62 KFMKLENMVIEGSESYGLIESEFDNQTKWAERITYCIKDTYYNCFSMHDFPIDSEKDWK- 120 Query: 106 VSYPELREKIARRVPRFLETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVIN 165 +YP + K+ R+ RFLE + S+ ILFIR G E EL +VL E+ + +FN+L++N Sbjct: 121 STYPSFKAKLDTRINRFLEKINSSESILFIRIWGNRDEAVELKNVLSEITNKDFNILIVN 180 Query: 166 -QAPVGGIVETPWPFPNVCALQIPGVPDEFHDNDDLWKNILDRFTV 210 + + IVE W VC++++P D + +D W IL++ T+ Sbjct: 181 FKEDISNIVEQNWGISRVCSIELPRYQDRWEGDDSDWNYILNKITL 226 >B7IRE8.1 B7IRE8_BACC2 Putative uncharacterized protein Length = 224 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 17/224 (7%) Query: 3 MNFNEIQGTYDIIFSLGRNCLAADQLSRHMLRKNGGVLDWVESPALSGVSNLLRNRFSNF 62 MN ++IQ +Y +I SLG C +Q+ RH LR G LDW P+LS V+ LL+NRF F Sbjct: 1 MNLDDIQKSYGVIVSLGGLCQVTNQIKRHHLRTFSGPLDWFYYPSLSDVNRLLQNRFEKF 60 Query: 63 MELPNLAITG----------INEKAK-----CYIVRDAAYYIFSHHDFPLNQNTPTQLVS 107 M+L N+ I G + + K Y ++D Y FS HDFP++ + + Sbjct: 61 MKLENMVIEGSESYGLIESEFDNQTKWAERITYCIKDTYYNCFSMHDFPIDSEKDWK-ST 119 Query: 108 YPELREKIARRVPRFLETLRSANRILFIRTEGTIHETAELLDVLRELVSGEFNVLVIN-Q 166 YP + K+ R+ RFLE + S+ ILFIR G E EL +VL E+ + +FN+L++N + Sbjct: 120 YPSFKAKLDTRINRFLEKINSSESILFIRIWGNRDEAVELKNVLSEITNKDFNILIVNFK 179 Query: 167 APVGGIVETPWPFPNVCALQIPGVPDEFHDNDDLWKNILDRFTV 210 + IVE W VC++++P D + +D W IL++ T+ Sbjct: 180 EDISNIVEQNWGISRVCSIELPRYQDRWEGDDSDWNYILNKITL 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,301,803,143 Number of extensions: 52772392 Number of successful extensions: 118495 Number of sequences better than 1.0e-05: 91 Number of HSP's gapped: 118376 Number of HSP's successfully gapped: 91 Length of query: 211 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 81 Effective length of database: 1,835,964,253 Effective search space: 148713104493 Effective search space used: 148713104493 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)