BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0266.0004.p (300 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LVD0.1 A6LVD0_CLOB8 Transcriptional regulator, LysR family 267 7e-70 Q97GH3.1 Q97GH3_CLOAB Transcriptional regulator, LysR family 264 9e-69 B7B2L1.1 B7B2L1_9FIRM Putative uncharacterized protein 236 2e-60 Q97L21.1 Q97L21_CLOAB Transcriptional regulator, LysR family 208 4e-52 B0A6J5.1 B0A6J5_9CLOT Putative uncharacterized protein 187 9e-46 >A6LVD0.1 A6LVD0_CLOB8 Transcriptional regulator, LysR family Length = 288 Score = 267 bits (683), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 130/237 (54%), Positives = 170/237 (71%), Gaps = 1/237 (0%) Query: 61 RGPRSIQLTEAGMILRERAQQILELTDSTTRELKDFVKGVSGTLSIGTVSSSAATLLQDR 120 RG R+I+LT+AG+IL +RA+QIL LT ST ELKDF +G GTLSIGTVSSS A+LL R Sbjct: 50 RGSRNIRLTDAGVILYKRAKQILSLTKSTENELKDFKQGNHGTLSIGTVSSSGASLLDSR 109 Query: 121 LVEFHHNYSGVKFEIHEGNTYRIIDLLNKGIVEIGIVRTPFSSAGLECVYTVSEPMIAVM 180 L FH Y + FEIHEGNTY +++LL+KGI+EI IVRTPF+++G+ ++ EPM+A M Sbjct: 110 LNIFHEKYPFINFEIHEGNTYELLELLDKGIIEIAIVRTPFNNSGINSIFLPKEPMVAAM 169 Query: 181 APEYDWTGGKPEIEIGELRNQPLIVYRRFEQLIRETCLENGFDPQFFCMNDDARTTLLWA 240 + +WT + I I EL ++PLI YRRFE LI + C + F P FC NDDART+LLWA Sbjct: 170 RKDLNWTDSEI-INITELNDKPLIFYRRFESLIFKVCQDFNFQPTVFCKNDDARTSLLWA 228 Query: 241 NAGLGIGIIPRSAFTLASNSNVAAKEIRSDSLNTRVAAVWMKDKYLSSLAAKFIENF 297 N+GLGI I+P+SA L +S++ KEI SD L T++A +W K YLSS F++ F Sbjct: 229 NSGLGIAIVPKSAIKLIGSSSIIYKEIDSDILTTQIAIIWSKTGYLSSSGKNFLDLF 285 >Q97GH3.1 Q97GH3_CLOAB Transcriptional regulator, LysR family Length = 286 Score = 264 bits (674), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 125/238 (52%), Positives = 172/238 (72%), Gaps = 2/238 (0%) Query: 61 RGPRSIQLTEAGMILRERAQQILELTDSTTRELKDFVKGVSGTLSIGTVSSSAATLLQDR 120 RG R+I+LT+AG++L RA+QIL LT +T EL DF G GTLSIGTVSSS +L+ + Sbjct: 50 RGSRNIKLTDAGLMLYNRAKQILNLTQTTIDELNDFKNGTHGTLSIGTVSSSGWSLVNNI 109 Query: 121 LVEFHHNYSGVKFEIHEGNTYRIIDLLNKGIVEIGIVRTPFSSAGLECVYTVSEPMIAVM 180 L++FH Y + FEIHEGNTY ++++L +GI+E IVRTPF+S GL C+Y EPM+AVM Sbjct: 110 LIKFHKKYPLINFEIHEGNTYELLEILKRGIIEFAIVRTPFNSYGLNCIYLPKEPMVAVM 169 Query: 181 APEYDWTGGKPEIEIGELRNQPLIVYRRFEQLIRETCLENGFDPQFFCMNDDARTTLLWA 240 +++++ +I EL+++PLI YRRFE+LI E C + F P+ FC NDDARTTLLWA Sbjct: 170 REDFNYSLSN-TTKISELKDKPLIFYRRFEKLIYEACENSNFRPKVFCKNDDARTTLLWA 228 Query: 241 NAGLGIGIIPRSAFTLASNSNVAAKEIRSDSLNTRVAAVWMKDKYLSSLAAKFIENFS 298 +AG GI I+P+S +L NSN+ K+I SL+T++AA+W K+ Y+SS A F E F+ Sbjct: 229 SAGFGIAIVPKSVVSLG-NSNLIYKKIEDASLSTQLAAIWPKNNYISSSAKNFFEMFN 285 >B7B2L1.1 B7B2L1_9FIRM Putative uncharacterized protein Length = 294 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 121/237 (51%), Positives = 166/237 (70%) Query: 61 RGPRSIQLTEAGMILRERAQQILELTDSTTRELKDFVKGVSGTLSIGTVSSSAATLLQDR 120 RGP I+LTEAG +L RA Q+L++ T REL+D +G+ GTL+IGTVSSS L+ + Sbjct: 58 RGPHHIELTEAGELLAARAAQLLDMAAMTKRELQDLKQGLCGTLAIGTVSSSGNLLMHEG 117 Query: 121 LVEFHHNYSGVKFEIHEGNTYRIIDLLNKGIVEIGIVRTPFSSAGLECVYTVSEPMIAVM 180 + F + V FEIH+GNTY++ID+L K ++EI IVRTPF+++ C Y EPMIA M Sbjct: 118 MQAFRAKFPRVHFEIHDGNTYQLIDMLEKRLIEIAIVRTPFNASRFNCKYRQPEPMIAAM 177 Query: 181 APEYDWTGGKPEIEIGELRNQPLIVYRRFEQLIRETCLENGFDPQFFCMNDDARTTLLWA 240 PE DW + EI + EL ++PLI+YRRFEQL+ +T +GF P C+NDDARTT+LWA Sbjct: 178 TPELDWATQQQEIAVEELADRPLILYRRFEQLLLDTFAAHGFTPDVACLNDDARTTILWA 237 Query: 241 NAGLGIGIIPRSAFTLASNSNVAAKEIRSDSLNTRVAAVWMKDKYLSSLAAKFIENF 297 NAGLG+ I P +A LA+++++ K I SL TR+AA+W ++ Y+SSLA F+E F Sbjct: 238 NAGLGVAIAPAAAVDLAAHNHLHVKNIAEPSLRTRLAAIWPREAYISSLAEHFLEYF 294 >Q97L21.1 Q97L21_CLOAB Transcriptional regulator, LysR family Length = 293 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 148/236 (62%) Query: 61 RGPRSIQLTEAGMILRERAQQILELTDSTTRELKDFVKGVSGTLSIGTVSSSAATLLQDR 120 R R I+LT AG +L RA+Q+LEL D T +ELKDF +G+ GTLSIG +SS+ LL + Sbjct: 50 RTTRRIKLTNAGEMLLHRAKQMLELRDRTIKELKDFNEGLQGTLSIGAISSAGDILLPNW 109 Query: 121 LVEFHHNYSGVKFEIHEGNTYRIIDLLNKGIVEIGIVRTPFSSAGLECVYTVSEPMIAVM 180 + FH Y + F I E +T+ +++LLN G++E+GI+RTP +S E + EPMIA Sbjct: 110 IYNFHKKYPNIDFHIRECDTHEVLELLNNGLIEVGIIRTPLNSELYESILLPDEPMIAAA 169 Query: 181 APEYDWTGGKPEIEIGELRNQPLIVYRRFEQLIRETCLENGFDPQFFCMNDDARTTLLWA 240 W I++ +L ++PL+++RR+ ++I E C ++GF+P+ +D R LLWA Sbjct: 170 NENMFWRDEPKVIDMKDLSSKPLLMHRRYAKMIIEACEQSGFEPRVLGKIEDTRAILLWA 229 Query: 241 NAGLGIGIIPRSAFTLASNSNVAAKEIRSDSLNTRVAAVWMKDKYLSSLAAKFIEN 296 N G+G+ IIP+ + N N+ +I+ SL TR A VW K +YLS+ A F+EN Sbjct: 230 NTGMGVAIIPKDWIGIIPNINLKYAQIKKSSLKTRTAIVWKKGEYLSAAAKHFLEN 285 >B0A6J5.1 B0A6J5_9CLOT Putative uncharacterized protein Length = 292 Score = 187 bits (475), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 148/242 (61%), Gaps = 3/242 (1%) Query: 61 RGPRSIQLTEAGMILRERAQQILELTDSTTRELKDFVKGVSGTLSIGTVSSSAATLLQDR 120 RG R + LT+ G +L +R + ++ + +ST E++DF G+ G L IG VS+ + + Sbjct: 50 RGSRKVTLTDVGNLLYKRGKDMVNVFESTLNEVEDFKSGIEGVLKIGAVSTCNQFIPNEL 109 Query: 121 LVEFHHNYSGVKFEIHEGNTYRIIDLLNKGIVEIGIVRTPFSSAGLECVYTVSEPMIAVM 180 + + Y VKFE++EGNTY ++D++ +GIV+IG+VRTPF+S L C+ +EPM+ V+ Sbjct: 110 ISPYAKQYPKVKFELYEGNTYEVVDMIERGIVDIGVVRTPFNSENLCCLNLRTEPMVVVV 169 Query: 181 APEYDWTG--GKPEIEIGELRNQPLIVYRRFEQLIRETCLENGFDPQFFCMNDDARTTLL 238 + G + +IE +L +P+++YRR+E+LI + N +C+NDD+RTT+ Sbjct: 170 NKNGEKFGFEYREKIESKDLDGKPIVIYRRYEKLIMDVLQLNKVKANIYCLNDDSRTTIA 229 Query: 239 WANAGLGIGIIPRSAFTLASNSNVAAKEIRSDSLNTRVAAVWMKDKYLSSLAAKFIENFS 298 WA AGL IGI+P+S SN + E+ + L T+++ WM++KYL A ++ Sbjct: 230 WAQAGLAIGIVPKSIID-NSNKEIEVYELDEEELKTQISVAWMENKYLPRSARNLLDMIR 288 Query: 299 RA 300 ++ Sbjct: 289 KS 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,644,664,379 Number of extensions: 63769167 Number of successful extensions: 163320 Number of sequences better than 1.0e-05: 2346 Number of HSP's gapped: 163920 Number of HSP's successfully gapped: 2346 Length of query: 300 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 165 Effective length of database: 1,788,859,178 Effective search space: 295161764370 Effective search space used: 295161764370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)