BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0265.0026.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFI0.1 B3KFI0_9BACI YrzE                                             71   3e-11
B1DDN7.1 B1DDN7_9BACL Putative uncharacterized protein                 60   7e-08
C0ZAP1.1 C0ZAP1_BREBN Conserved hypothetical membrane protein          57   4e-07

>B3KFI0.1 B3KFI0_9BACI YrzE
          Length = 129

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 20  QDLTMYTYIVHGVAAAFGGLTAGRRAPGKGWYHGGITGALYGIIVLLIGFLALDSA 75
            DL+ YT++VH VAA  GG  +G+RA  KGWY+G +TG +YGI +L+IGFLALDS+
Sbjct: 46  DDLSFYTFLVHAVAAFIGGCVSGKRAGNKGWYYGCLTGLVYGITLLVIGFLALDSS 101


>B1DDN7.1 B1DDN7_9BACL Putative uncharacterized protein
          Length = 130

 Score = 60.1 bits (144), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 20  QDLTMYTYIVHGVAAAFGGLTAGRRAPGKGWYHGGITGALYGIIVLLIGFLALDSAPAG 78
            +L  Y+  VHG++A  GG  +G+R+  KGWYHG + G +YGI VL IGFLA +S  +G
Sbjct: 47  NNLPQYSLAVHGLSALAGGFVSGKRSGMKGWYHGALLGLIYGITVLTIGFLAANSGLSG 105


>C0ZAP1.1 C0ZAP1_BREBN Conserved hypothetical membrane protein
          Length = 135

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%)

Query: 21 DLTMYTYIVHGVAAAFGGLTAGRRAPGKGWYHGGITGALYGIIVLLIGFLALDS 74
           L  +TY+++ +A   GG   GRR  GKGWY+GG+TG  Y + +LLIGFL  D+
Sbjct: 39 TLPYFTYVINAIALLVGGYVTGRRCGGKGWYYGGLTGLTYFLFILLIGFLGFDA 92


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.145    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 468,244,380
Number of extensions: 16564338
Number of successful extensions: 67624
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 67624
Number of HSP's successfully gapped: 5
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)