BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0265.0025.p (270 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFI1.1 B3KFI1_9BACI Putative uncharacterized protein 298 2e-79 A9U7M6.1 A9U7M6_PHYPA Predicted protein 291 5e-77 B1DDN5.1 B1DDN5_9BACL Putative uncharacterized protein 268 4e-70 Q9KDI1.1 Q9KDI1_BACHD BH1232 protein 211 6e-53 C0ZAP3.1 C0ZAP3_BREBN Conserved hypothetical membrane protein 196 2e-48 >B3KFI1.1 B3KFI1_9BACI Putative uncharacterized protein Length = 261 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 154/260 (59%), Positives = 186/260 (71%), Gaps = 9/260 (3%) Query: 17 FQHISAHIFLTVLMYIFIFLCMRIMGKREIGKLSVFDLTISIMIAEIAIFSIEDIERPIY 76 H++ I TVLMY+ IF+ MRIMGKREIGKLS+FDL IS+MIAEIA+F +ED+ +PI+ Sbjct: 1 MSHMTILILRTVLMYVVIFVTMRIMGKREIGKLSIFDLVISVMIAEIAVFVLEDVHKPIW 60 Query: 77 DGLVPMATLVLIQVLVAQFSLKSRKLRLLIDGKPSILISNGKLHRGEMRKQRYNIDDLLL 136 DGL P+A LV IQV +A LK+R +RL DGKPSIL+S GKLHR EM K RYN+DDL+ Sbjct: 61 DGLAPIAVLVAIQVGLAYIGLKNRSIRLFADGKPSILVSRGKLHRKEMSKLRYNLDDLMQ 120 Query: 137 QLRGQNIDSPADVEFAILETSGQLTVIEKNKGIXXXXXXXXXXXTAE--------ARDKA 188 QLRG++IDS ADVEFAILETSGQLTVI K+ + A KA Sbjct: 121 QLRGKDIDSLADVEFAILETSGQLTVIPKDADNGSNRSNSSSSSSNASSSTHSSGALSKA 180 Query: 189 KPSGGDGEGRVKLPSHKIRYEGLPIPLIMDGKVQDHNLEMIGKTRFWLRTQIRQKGVSDF 248 K G+ V +P KI YEGLPIPLI+DGKVQD NLE+I KTRFWL+ +I+ G DF Sbjct: 181 KSETGN-PTVVDIPYDKITYEGLPIPLILDGKVQDENLELIEKTRFWLKNEIQNHGAKDF 239 Query: 249 KDVFLCSINHKGEIYVDRLD 268 KD+FLCSI+HKG IY+DR D Sbjct: 240 KDIFLCSIDHKGRIYIDRKD 259 >A9U7M6.1 A9U7M6_PHYPA Predicted protein Length = 310 Score = 291 bits (744), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 157/295 (53%), Positives = 189/295 (64%), Gaps = 35/295 (11%) Query: 7 DHWKESEE-NMFQHISAHIFLTVLMYIFIFLCMRIMGKREIGKLSVFDLTISIMIAEIAI 65 D W E + I IF TVLMY I+L +RIMGKREIGKLS+FDL ISIMIAEI + Sbjct: 15 DEWHRKERVAVISDILIPIFRTVLMYFVIYLTLRIMGKREIGKLSIFDLVISIMIAEIGV 74 Query: 66 FSIEDIERPIYDGLVPMATLVLIQVLVAQFSLKSRKLRLLIDGKPSILISNGKLHRGEMR 125 F +ED RPI DGL PMATLVLIQ+ +A SLKSRK+RLL +GKP+IL+S GKL+R EMR Sbjct: 75 FVLEDTARPITDGLFPMATLVLIQITIAFISLKSRKIRLLFEGKPAILVSGGKLNREEMR 134 Query: 126 KQRYNIDDLLLQLRGQNIDSPADVEFAILETSGQLTVIEKNKGIXXXXXXXXXXXTAEAR 185 K RYN+DDLLLQLRG++I++ ADVEFAILE SGQLTVI K+K ++ Sbjct: 135 KHRYNLDDLLLQLRGRSIENVADVEFAILENSGQLTVIPKSKRNEKKEKYDMPVPQEKSN 194 Query: 186 DKAKPSGGDGEG----------------------------------RVKLPSHKIRYEGL 211 K G G ++ +PS K Y L Sbjct: 195 RNGKLQGHAGNALAISRSEETAGKPKQIYRTPYADPSRVPARNRSKKILVPSGKFTYGIL 254 Query: 212 PIPLIMDGKVQDHNLEMIGKTRFWLRTQIRQKGVSDFKDVFLCSINHKGEIYVDR 266 PIPLIMDGKVQD NLE + K RFWL+ QIRQ+G+ +FKDVFLCSI+HKG +Y+DR Sbjct: 255 PIPLIMDGKVQDDNLERLNKNRFWLKNQIRQQGIKEFKDVFLCSIDHKGRLYIDR 309 >B1DDN5.1 B1DDN5_9BACL Putative uncharacterized protein Length = 255 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 135/241 (56%), Positives = 179/241 (74%), Gaps = 4/241 (1%) Query: 27 TVLMYIFIFLCMRIMGKREIGKLSVFDLTISIMIAEIAIFSIEDIERPIYDGLVPMATLV 86 TVL+Y +FL MR MGKREIGKLSVFDL IS+MIAEIA+ IED++R +++G++PM L+ Sbjct: 10 TVLIYFVVFLIMRFMGKREIGKLSVFDLVISVMIAEIAVIVIEDVDRSMWEGILPMVVLL 69 Query: 87 LIQVLVAQFSLKSRKLRLLIDGKPSILISNGKLHRGEMRKQRYNIDDLLLQLRGQNIDSP 146 ++QV +A +LK+RKLRL DGKPS +I+ GKL+R MRKQRYN+DDLLLQLR I + Sbjct: 70 IVQVGIAFIALKNRKLRLWFDGKPSFIIAKGKLNRDVMRKQRYNLDDLLLQLRENKISNV 129 Query: 147 ADVEFAILETSGQLTVIEKNKGIXXXXXXXXXXXTAEARDKAKPSGGDG--EGRVKLPSH 204 ADVEFAILET+G+L+VIEK K A KA + D + + K+P+H Sbjct: 130 ADVEFAILETTGKLSVIEK-KDAENKDTENKEQEELMAERKANAATDDPILKPQSKMPAH 188 Query: 205 KIRYEGLPIPLIMDGKVQDHNLEMIGKTRFWLRTQIRQKGVSDFKDVFLCSINHKGEIYV 264 R+E LPIPLIMDGKVQD NL + KTRFWL+ ++++GV DFK+VFLC+I+HKG++++ Sbjct: 189 -FRFEMLPIPLIMDGKVQDENLAKMDKTRFWLKNVLQEQGVHDFKEVFLCTIDHKGKLFI 247 Query: 265 D 265 D Sbjct: 248 D 248 >Q9KDI1.1 Q9KDI1_BACHD BH1232 protein Length = 218 Score = 211 bits (536), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 111/242 (45%), Positives = 149/242 (61%), Gaps = 35/242 (14%) Query: 24 IFLTVLMYIFIFLCMRIMGKREIGKLSVFDLTISIMIAEIAIFSIEDIERPIYDGLVPMA 83 I T+L+Y I L +RIMGKREIG+LSV D +SIMIAE+A+ SIE+I+ + + ++P+ Sbjct: 7 ILRTILIYFIILLVLRIMGKREIGQLSVLDFVVSIMIAELAVISIENIQVSMMNTIIPIV 66 Query: 84 TLVLIQVLVAQFSLKSRKLRLLIDGKPSILISNGKLHRGEMRKQRYNIDDLLLQLRGQNI 143 L LIQ++ A SLKS+ +R L+DGKP++LIS GK+ EMRKQRYN DDLL+QLR N+ Sbjct: 67 VLSLIQIVFAYVSLKSKTMRRLVDGKPTVLISQGKIDEREMRKQRYNFDDLLIQLRQSNV 126 Query: 144 DSPADVEFAILETSGQLTVIEKNKGIXXXXXXXXXXXTAEARDKAKPSGGDGEGRVKLPS 203 +DVEFAILE SG+L+VIEK +P G Sbjct: 127 RDISDVEFAILEPSGKLSVIEK-----------------------RPFSGKSSSY----- 158 Query: 204 HKIRYEGLPIPLIMDGKVQDHNLEMIGKTRFWLRTQIRQKGVSDFKDVFLCSINHKGEIY 263 LP+PLI+DGKVQ+ +LE I KT WLR Q+R+ G D K + C+I G + Sbjct: 159 -------LPLPLILDGKVQEKHLEKINKTSLWLRQQLRKLGYRDIKKISYCAIKEDGTFF 211 Query: 264 VD 265 +D Sbjct: 212 ID 213 >C0ZAP3.1 C0ZAP3_BREBN Conserved hypothetical membrane protein Length = 235 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 152/244 (62%), Gaps = 19/244 (7%) Query: 27 TVLMYIFIFLCMRIMGKREIGKLSVFDLTISIMIAEIAIFSIEDIERPIYDGLVPMATLV 86 T+ Y F+ + +R+MGKRE+GKLSVFD+ ISIM+AE+A +IED+++P +PM + Sbjct: 11 TLFSYFFLLILVRLMGKRELGKLSVFDVVISIMLAEMAALAIEDVDKPALRFYLPMLLIA 70 Query: 87 LIQVLVAQFSLKSRKLRLLIDGKPSILISNGKLHRGEMRKQRYNIDDLLLQLRGQNIDSP 146 L++V A SLKS+K R +DG ++I NG++ MR+ R N+DDL++ LR +++ + Sbjct: 71 LLEVAFAYLSLKSKKFRDTVDGSADLIIENGQIREQAMRRNRLNMDDLMVHLRQKDVKNI 130 Query: 147 ADVEFAILETSGQLTVIEKNKGIXXXXXXXXXXXTAEARDKAKPSGGDGEGRVKLPSHKI 206 ADVEFA+LE +GQ++V K + K K + D KL + Sbjct: 131 ADVEFALLEPTGQMSVFLKEQ-------------------KEKVTREDLALMKKLQVGPV 171 Query: 207 RYEGLPIPLIMDGKVQDHNLEMIGKTRFWLRTQIRQKGVSDFKDVFLCSINHKGEIYVDR 266 Y+GLPIPLI+DGKV+ L IG+ WL+ +IR+ G+ D ++V CSI+ +G +Y+D+ Sbjct: 172 SYKGLPIPLILDGKVRTEALSKIGQNELWLKREIRKYGIKDIREVSFCSIDERGIMYLDK 231 Query: 267 LDMP 270 D P Sbjct: 232 KDKP 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.142 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,477,676,563 Number of extensions: 56736247 Number of successful extensions: 111353 Number of sequences better than 1.0e-05: 885 Number of HSP's gapped: 110927 Number of HSP's successfully gapped: 889 Length of query: 270 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 137 Effective length of database: 1,807,701,208 Effective search space: 247655065496 Effective search space used: 247655065496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)