BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0265.0021.p
         (84 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFI3.1 B3KFI3_9BACI Putative uncharacterized protein                107   3e-22
B1DDN2.1 B1DDN2_9BACL Putative uncharacterized protein                104   2e-21
C0ZAP5.1 C0ZAP5_BREBN Putative uncharacterized protein                 78   3e-13
A7GT94.1 A7GT94_BACCN Putative uncharacterized protein                 61   3e-08
C2RTK6.1 C2RTK6_BACCE Putative uncharacterized protein                 58   2e-07

>B3KFI3.1 B3KFI3_9BACI Putative uncharacterized protein
          Length = 85

 Score =  107 bits (267), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 61/81 (75%)

Query: 1  VESEEWSYEQLSDEIEAMCRSKAEEFRLLGYEYVTGKDIWDCASRNYDKEGRPALHKLVN 60
          +E E+ S E+L   IE +C SK EE  L+GYEYVT  DIW+C S  Y+KEG P+LH+LVN
Sbjct: 1  MELEQMSEEELMSTIEMVCLSKVEEMHLIGYEYVTSNDIWNCVSSKYEKEGVPSLHQLVN 60

Query: 61 DIYSLKANSYMNYLTIAAYRG 81
          DI SLKA + MNY+TI+AY+G
Sbjct: 61 DILSLKATALMNYMTISAYKG 81


>B1DDN2.1 B1DDN2_9BACL Putative uncharacterized protein
          Length = 93

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 58/73 (79%)

Query: 9  EQLSDEIEAMCRSKAEEFRLLGYEYVTGKDIWDCASRNYDKEGRPALHKLVNDIYSLKAN 68
          E L+  IE +C SKAEEF L+GYE+VTGK+IW+C S  Y+K G+P LH++VNDI SLK  
Sbjct: 18 EDLNSAIEQLCNSKAEEFHLIGYEHVTGKEIWECVSEKYNKTGQPELHQIVNDILSLKVT 77

Query: 69 SYMNYLTIAAYRG 81
           +MN++T++A+RG
Sbjct: 78 KFMNFMTLSAFRG 90


>C0ZAP5.1 C0ZAP5_BREBN Putative uncharacterized protein
          Length = 78

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 2/67 (2%)

Query: 14 EIEAMCRSKAEEFRLLGYEYVTGKDIWDCASRNYDKEGRPALHKLVNDIYSLKANSYMNY 73
          ++ ++C SKAEEF LLGY+ V  +D+W+C +  Y +   P +H+LVNDI SLK N YMNY
Sbjct: 12 QVVSLCVSKAEEFALLGYDNVAPEDVWECVTNGYKE--MPPIHQLVNDILSLKTNKYMNY 69

Query: 74 LTIAAYR 80
          L I  Y+
Sbjct: 70 LMIQMYK 76


>A7GT94.1 A7GT94_BACCN Putative uncharacterized protein
          Length = 93

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 14 EIEAMCRSKAEEFRLLGYEYVTGKDIWDCASRNYDK--EGRPALHKLVNDIYSLKANSYM 71
          +++ + +SK EEFR++GY+ VT +DIW        K  +    L++LVNDI +L AN YM
Sbjct: 13 QLQVVLQSKIEEFRMIGYDQVTIEDIWKYLKFKKWKKVDSNVRLYELVNDILTLTANEYM 72

Query: 72 NYLTIAAYRG 81
           YLT+ AY+ 
Sbjct: 73 TYLTVEAYQA 82


>C2RTK6.1 C2RTK6_BACCE Putative uncharacterized protein
          Length = 94

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 14 EIEAMCRSKAEEFRLLGYEYVTGKDIWDCASRNYDK--EGRPALHKLVNDIYSLKANSYM 71
          +++ +  SK EEF++ GY+ VT  DIW        K  +G   L++LVND+ ++ AN YM
Sbjct: 14 QLQVVLESKVEEFQMFGYDRVTDDDIWKFLKVKKWKKIDGDVRLYELVNDVLTVSANEYM 73

Query: 72 NYLTIAAYRG 81
           YLT+ AY+ 
Sbjct: 74 TYLTVEAYQA 83


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 505,074,594
Number of extensions: 17261732
Number of successful extensions: 40682
Number of sequences better than 1.0e-05: 87
Number of HSP's gapped: 40635
Number of HSP's successfully gapped: 87
Length of query: 84
Length of database: 3,060,696,203
Length adjustment: 54
Effective length of query: 30
Effective length of database: 2,551,961,393
Effective search space: 76558841790
Effective search space used: 76558841790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)