BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0265.0017.p (773 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFI7.1 B3KFI7_9BACI Single-stranded-DNA-specific exonuclease RecJ 918 0.0 B1DDM8.1 B1DDM8_9BACL Single-stranded-DNA-specific exonuclease RecJ 578 e-163 B7GFN9.1 B7GFN9_ANOFW Single-stranded DNA-specific exonuclease RecJ 566 e-159 C3BQE1.1 C3BQE1_9BACI Exonuclease RecJ 559 e-157 C5D515.1 C5D515_9BACI Single-stranded-DNA-specific exonuclease RecJ 557 e-156 >B3KFI7.1 B3KFI7_9BACI Single-stranded-DNA-specific exonuclease RecJ Length = 800 Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/771 (58%), Positives = 570/771 (73%), Gaps = 2/771 (0%) Query: 1 LSSLLVKRGMDTPDKALLFMEGGEGEGHDPFLLKGMAEAVPRIRKALQDEEHILVYGDYD 60 ++SL+ RG+ + + F+ G HDP+L++GM EAVPRIRKAL+D EHIL+YGDYD Sbjct: 31 VASLMASRGIQSAEDGREFLYGTFELTHDPYLMQGMREAVPRIRKALEDREHILIYGDYD 90 Query: 61 ADGVSSTALMIYLLRYLGASFDIYIPHRANEGYGLHNHALDWAKQQGVSLIITVDTGISA 120 ADGVSST+LMI+L+RYLGAS+DIYIPHR+NEGYGLHNHALDWA QQGVSL+ITVDTGISA Sbjct: 91 ADGVSSTSLMIHLMRYLGASYDIYIPHRSNEGYGLHNHALDWAHQQGVSLVITVDTGISA 150 Query: 121 YHQIAYANGLGMDVIVTDHHEPPELLPEAYALINPKLPDCPYPFKGLAGVGVAYKLAQAL 180 QIAYAN LG+DVIVTDHHEPPE+LPEAYALINPK+P CPYPFKGLAGVGVAYKLAQAL Sbjct: 151 VEQIAYANSLGIDVIVTDHHEPPEVLPEAYALINPKIPTCPYPFKGLAGVGVAYKLAQAL 210 Query: 181 LGDKVPVEWHEIAAIGTVADLMPLQDENRSIVRKGLSSMRNSPFPGIRALLGVSGITMET 240 +GD P EW +I +IGT+ADLMPL ENR +V+ G+ SMR + + GIR+LL VSGI +E Sbjct: 211 VGDP-PEEWLQIVSIGTIADLMPLTGENRVLVKHGIESMRRTRYEGIRSLLEVSGIHVEQ 269 Query: 241 VSAVNIAFGMAPRINASGRLDHAGRAVTLLTTENPXXXXXXXXXXXXXNKERQLVVERIV 300 V+AVN+AF MAPRINASGRLDHAGRAVTLLTTE+ NK+RQ VVE IV Sbjct: 270 VTAVNVAFSMAPRINASGRLDHAGRAVTLLTTEHREEAERLAWELDGLNKDRQQVVENIV 329 Query: 301 TEAAAMLELQIQQDKLPDIIVLAQQGWNVGVVGIVASKLLERYYRPVIILDIHPETGMCK 360 EA M++ + + ++P +IVLA +GWNVGVVGIVASK+LER+YRPV+IL I PETG CK Sbjct: 330 QEALGMVQNRWRGQEIPPVIVLAGEGWNVGVVGIVASKILERFYRPVVILGIDPETGNCK 389 Query: 361 GSARSIPGLDIYEALSSCADLMDHFGGHPAAAGMSLHQDKLEEFAAALNDYAAKVLTPEH 420 GSARSIPG DIY AL SC D+MDHFGGHP+AAGMSLH+D+L F L+ YA L EH Sbjct: 390 GSARSIPGFDIYAALLSCKDVMDHFGGHPSAAGMSLHRDRLAAFEQGLHRYAEDALEAEH 449 Query: 421 FLPVTEADEEAAIADLSLQATLEMDRLAPFGMANPVPKFIVRGAAVKETRKMGQDGKHLK 480 + V EAD EA+++++S+ +M++L PFGMAN VPK + R +K+ RK+G++GKHLK Sbjct: 450 LIAVCEADLEASLSEVSVPILEQMEQLGPFGMANAVPKIVFRDVVIKDVRKIGKEGKHLK 509 Query: 481 LVLQQDSHTIEVVAFGKGGLAELLPGGTLIDILAELSVNEWNGSRKPQLMLQDLAVPKPQ 540 L LQQ I+ ++FG G LA++LP G+++D+L ELSVNEWNGSRK QLM+QD+ P Q Sbjct: 510 LRLQQKREVIDAISFGWGHLADILPVGSVVDVLGELSVNEWNGSRKVQLMIQDICAPYQQ 569 Query: 541 LFDLRGAADAVKQAAQLHELLKPYSGVKPLRTAAVF-QNSRLSPMGALQGMSLWVYDEDA 599 +FD RG + +++ + L+P+ +R+A V+ ++S L M LWVYD +A Sbjct: 570 VFDYRGIKEPIREIQRWRAELEPHLRCPAVRSAVVYAKDSHPEIKSQLYDMCLWVYDRNA 629 Query: 600 GISPVRHHPADSEDAQISLLCLLDMPETPEQLDALLAAFPQADNIALLHSIRDGRDRLQM 659 GI P A IS+L +LD+PET EQL A ++AF NI +LH R+ R+RLQ+ Sbjct: 630 GIVPDNEIAASGSQEDISVLFVLDVPETAEQLAAFMSAFHSVPNIFMLHPTRNLRERLQI 689 Query: 660 PTRDHFKVLYKSIAALATAPVPEHELLLRLTRQSSMGMRMLAKMLDVFEELEFIDRSRGT 719 P R+ FK LY S+A L +AP+PE E++ RL +Q+S+ RML K+LDVFEEL FI R +G Sbjct: 690 PDREQFKKLYVSLAGLTSAPMPEKEVVARLQKQTSLSSRMLVKVLDVFEELAFIQRDQGQ 749 Query: 720 ITFVTQPSAKSLTASQQFVRLGKTAEMEQYFMESSRSELQEWMLSRRLEVS 770 ITFV +P K L AS+ F L A+MEQ+ + + +L +WM SR VS Sbjct: 750 ITFVPKPEKKPLDASRHFRELSDLADMEQHLLHAGTEQLTQWMTSRTKGVS 800 >B1DDM8.1 B1DDM8_9BACL Single-stranded-DNA-specific exonuclease RecJ Length = 654 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 284/541 (52%), Positives = 380/541 (70%), Gaps = 10/541 (1%) Query: 1 LSSLLVKRGMDTPDKALLFMEGGEGEGHDPFLLKGMAEAVPRIRKALQDEEHILVYGDYD 60 ++ LLV+RG + A F+ GGE HDP+LL GM EAV RIR+A + E I +YGDYD Sbjct: 11 VAKLLVQRGYKDKEAAETFLRGGEDRLHDPYLLIGMTEAVARIRQAADNGEFIRIYGDYD 70 Query: 61 ADGVSSTALMIYLLRYLGASFDIYIPHRANEGYGLHNHALDWAKQQGVSLIITVDTGISA 120 ADGVSST+L+I++ R LG +FD YIPHRA+EGYGL+ A+D A GV LI+TVDTGISA Sbjct: 71 ADGVSSTSLLIHVFRELGYTFDYYIPHRASEGYGLNTGAIDIAAADGVRLIVTVDTGISA 130 Query: 121 YHQIAYANGLGMDVIVTDHHEPPELLPEAYALINPKLPDCPYPFKGLAGVGVAYKLAQAL 180 Y Q+ YA LG+D++VTDHHEPPE +P+A A++NPK DCPYPFKGLAGVGVA+KLA AL Sbjct: 131 YEQVEYAKSLGIDIVVTDHHEPPERIPDAVAVVNPKREDCPYPFKGLAGVGVAFKLATAL 190 Query: 181 LGDKVPVEWHEIAAIGTVADLMPLQDENRSIVRKGLSSMRNSPFPGIRALLGVSGITMET 240 +G + P+EW +I ++GT+AD+MPL DENR +VR GL+ ++N+ G RAL GI ++ Sbjct: 191 MG-RAPMEWTDIVSLGTIADIMPLTDENRVLVRAGLARLQNTDNTGFRALSEACGIELDQ 249 Query: 241 VSAVNIAFGMAPRINASGRLDHAGRAVTLLTTENPXXXXXXXXXXXXXNKERQLVVERIV 300 V++ +AFGMAPRINA+GRLDHA RAV LLTT + NKERQ +V+ IV Sbjct: 250 VTSTTVAFGMAPRINAAGRLDHAKRAVELLTTGDYDEAIRAASSLDVLNKERQRIVDGIV 309 Query: 301 TEAAAMLELQIQQDKL-------PDIIVLAQQGWNVGVVGIVASKLLERYYRPVIILDIH 353 EA L+ Q ++D P +IVLA +GWNVGV+GIVASK+LERYY+PVI+L I Sbjct: 310 KEAE--LQWQGKRDAARAAGRPEPAVIVLAGEGWNVGVIGIVASKILERYYKPVIVLGID 367 Query: 354 PETGMCKGSARSIPGLDIYEALSSCADLMDHFGGHPAAAGMSLHQDKLEEFAAALNDYAA 413 P++GMCKGSARSI G D++ AL+ C +L+DH+GGH AAAGMSL +D+L F L + A Sbjct: 368 PDSGMCKGSARSIEGYDLHAALTECDELLDHYGGHQAAAGMSLRRDQLPAFEEKLGELAM 427 Query: 414 KVLTPEHFLPVTEADEEAAIADLSLQATLEMDRLAPFGMANPVPKFIVRGAAVKETRKMG 473 + LT + ++P T D ++ D S+ ++ L PFG NP P+ +++ A + + R MG Sbjct: 428 EWLTEQDWIPKTAIDLVCSVGDASVHTIGQLALLEPFGAGNPSPRLLLQSAELSDYRTMG 487 Query: 474 QDGKHLKLVLQQDSHTIEVVAFGKGGLAELLPGGTLIDILAELSVNEWNGSRKPQLMLQD 533 +D +HLKL L+ +++ V FG G L+ L G +D++ ELS+NEWNG RK QL + D Sbjct: 488 KDARHLKLSLRSGRTSLDAVGFGLGELSNQLQSGLPVDLVGELSINEWNGQRKAQLHIHD 547 Query: 534 L 534 L Sbjct: 548 L 548 >B7GFN9.1 B7GFN9_ANOFW Single-stranded DNA-specific exonuclease RecJ Length = 789 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 325/766 (42%), Positives = 448/766 (58%), Gaps = 30/766 (3%) Query: 1 LSSLLVKRGMDTPDKALLFMEGGEGEGHDPFLLKGMAEAVPRIRKALQDEEHILVYGDYD 60 ++SLLV RG T + A F E + H PFLL M +AV RI KA+ ++EHILV+GDYD Sbjct: 34 VASLLVSRGYHTVEAARSFFERKQS-FHSPFLLNDMEKAVERIEKAITNDEHILVFGDYD 92 Query: 61 ADGVSSTALMIYLLRYLGASFDIYIPHRANEGYGLHNHALDWAKQQGVSLIITVDTGISA 120 ADGVSST +M+ LR GA+ YIP+R EGYG + A AKQQGVSLIITVDTGISA Sbjct: 93 ADGVSSTVVMVSALREKGANVSFYIPNRFTEGYGPNEQAFRLAKQQGVSLIITVDTGISA 152 Query: 121 YHQIAYANGLGMDVIVTDHHEPPELLPEAYALINPKL-PDCPYPFKGLAGVGVAYKLAQA 179 H+ A LG+D+I+TDHHEP +LPEAYA I+PK+ P+ YPFK LAGVGVA+KLA A Sbjct: 153 LHEANVAKQLGIDLIITDHHEPGPVLPEAYATIHPKISPN--YPFKHLAGVGVAFKLAHA 210 Query: 180 LLGDKVPVEWHEIAAIGTVADLMPLQDENRSIVRKGLSSMRNSPFPGIRALLGVSGITME 239 L+G +VP EW ++ AIGT+ADL+PLQDEN + R G+ R + G++AL G++ Sbjct: 211 LIG-RVPYEWLDVVAIGTIADLVPLQDENHLLARLGIEQFRQTNRLGLQALCKQCGVSHT 269 Query: 240 TVSAVNIAFGMAPRINASGRLDHAGRAVTLLTTENPXXXXXXXXXXXXXNKERQLVVERI 299 V+ IAF + PR+NA+GRLD A AV LL T + N+ERQ +V I Sbjct: 270 AVTEDTIAFMIGPRVNAAGRLDCADPAVQLLLTTDAHEADMLAEQIDAMNRERQQLVNEI 329 Query: 300 VTEAAAMLELQIQQDKLPDIIVLAQQGWNVGVVGIVASKLLERYYRPVIILDIHPETGMC 359 EA ++E + D+ ++V+A++GWNVGV+GIVAS+L+E++YRP I+L I E G+ Sbjct: 330 TEEAIQLVEQHYRDDR---VLVVAKEGWNVGVIGIVASRLVEKFYRPTIVLSIDQEKGIA 386 Query: 360 KGSARSIPGLDIYEALSSCADLMDHFGGHPAAAGMSLHQDKLEEFAAALNDYAAKVLTPE 419 KGSARSI G D++ LS+C D++ HFGGHP AAGM+L ++E LN+ A + LT E Sbjct: 387 KGSARSIEGFDLFANLSNCRDILPHFGGHPMAAGMTLSFHDVDELRRRLNEAAEQQLTDE 446 Query: 420 HFLPVTEADEEAAIADLSLQATLEMDRLAPFGMANPVPKFIVRGAAVKETRKMGQDGKHL 479 HF+P+T D +I+D+SL+ +M+RLAPFGM NP P+ + + + RK+G D HL Sbjct: 447 HFIPITHIDLCCSISDVSLELIEQMNRLAPFGMGNPKPRVLFQHVQLDTLRKIGTDQNHL 506 Query: 480 KLVLQQDSHTIEVVAFGKGGLAELLPGGTLIDILAELSVNEWNGSRKPQLMLQDLAVPKP 539 KL+L ++ T+E + FG G + + + + I+ EL++NEWN RKPQLM+QD+AV + Sbjct: 507 KLLLAEEGKTLEAIGFGFGNIGDEIAPNVRLSIVGELAINEWNNFRKPQLMIQDIAVNEW 566 Query: 540 QLFDLRGAADAVKQAAQLHELLKPYSGVKPLRTAAVFQNSRLSPMGALQGMSLWVY-DED 598 QLFD+R K A L K R F + + L Y DE Sbjct: 567 QLFDMRHIRHPSKFMASL---------PKEKRLLIAFHRD------TVDALQLSAYADEI 611 Query: 599 AGISPVRHHPADSEDAQISLLCLLDMPETPEQLDALLAAFPQADNIALLHSIRDGRDRLQ 658 +S R D I LD+P + + + LL+ + I L R+ Sbjct: 612 VYVSNERDAIMDVGGKYI---VFLDLPPSQQIVKVLLSC-SLPERIYALFYQRENHFFSI 667 Query: 659 MPTRDHFKVLYKSIAALATAPVPEHELLLRLTRQSSMGMRMLAKMLDVFEELEFIDRSRG 718 +PTR+HFK LY + +P L R + M+ VF+EL FI G Sbjct: 668 LPTREHFKWLYSFLH--KRSPFDVRRYADDLARSRGWTKETILFMIQVFKELGFIIVENG 725 Query: 719 TITFVTQPSAKSLTASQQFVRLGKTAEMEQYFMESSRSELQEWMLS 764 ++ + LT S + AE+E F+ SS S+L+ W S Sbjct: 726 IVSLGRDVQKRDLTESPSYRLKQAQAELEHMFLYSSYSQLKRWFDS 771 >C3BQE1.1 C3BQE1_9BACI Exonuclease RecJ Length = 779 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 317/779 (40%), Positives = 448/779 (57%), Gaps = 36/779 (4%) Query: 1 LSSLLVKRGMDTPDKALLFMEGGEGEGHDPFLLKGMAEAVPRIRKALQDEEHILVYGDYD 60 ++SL + RG+DT DK + F+ G+ E HDPFLL+GM V RI +A+Q+ E IL++GDYD Sbjct: 31 VTSLFLSRGLDTEDKIVDFLNTGQQEFHDPFLLEGMDLTVERIGQAIQNGEQILIFGDYD 90 Query: 61 ADGVSSTALMIYLLRYLGASFDIYIPHRANEGYGLHNHALDWAKQQGVSLIITVDTGISA 120 ADGVSST ++ L+ LGA + YIP+R EGYG + A WA + G SLIITVDTGI+A Sbjct: 91 ADGVSSTTVLFLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHRAGFSLIITVDTGIAA 150 Query: 121 YHQIAYANGLGMDVIVTDHHEPPELLPEAYALINPKLPDCPYPFKGLAGVGVAYKLAQAL 180 H+ A LG+D+I+TDHHEPP LPEA A+I+PKL YPF LAGVGVA+K+A AL Sbjct: 151 VHEAQVAKELGIDLIITDHHEPPPELPEALAIIHPKLKGGVYPFHYLAGVGVAFKVAHAL 210 Query: 181 LGDKVPVEWHEIAAIGTVADLMPLQDENRSIVRKGLSSMRNSPFPGIRALLGVSGITMET 240 LG +VP EIA IGTVADL+ L ENR +V++GL MR + G++AL V+ ++ Sbjct: 211 LG-RVPEHLLEIAVIGTVADLVSLHGENRLLVQRGLKQMRMTKNIGLKALFKVANVSQSE 269 Query: 241 VSAVNIAFGMAPRINASGRLDHAGRAVTLLTTENPXXXXXXXXXXXXXNKERQLVVERIV 300 ++ +I F +APRINA GRL+ A AV LL +E+P NK R+ +V++I Sbjct: 270 ITEESIGFSIAPRINAIGRLEDAAPAVHLLLSEDPEEAKELAEEIDELNKLRKDIVKQIT 329 Query: 301 TEAAAMLELQIQQDKLPD---IIVLAQQGWNVGVVGIVASKLLERYYRPVIILDIHPETG 357 EA A +++ + LP+ ++VLA++GWN GV+GIVASKL+ER+YRP I+L I PE Sbjct: 330 EEAIA----EVENNYLPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQ 385 Query: 358 MCKGSARSIPGLDIYEALSSCADLMDHFGGHPAAAGMSLHQDKLEEFAAALNDYAAKVLT 417 KGSARSI G D++ LS C +L+ HFGGHP AAGM+LH + ++E LN+ A +LT Sbjct: 386 TAKGSARSIAGFDLFANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILT 445 Query: 418 PEHFLPVTEADEEAAIADLSLQATLEMDRLAPFGMANPVPKFIVRGAAVKETRKMGQDGK 477 E F P+T D + D++L A EM +LAPFG+ NP P+ +R A ++ R +G DG Sbjct: 446 SEDFTPITTVDAICKVEDVTLSAIEEMQKLAPFGVGNPKPRIAIRDAELESIRAIGSDGS 505 Query: 478 HLKLVLQQDSHTIEVVAFGKGGLAELLPGGTLIDILAELSVNEWNGSRKPQLMLQDLAVP 537 HLK+ L+ T++ + FG G A+ + + ++ E S+NEWN +KPQLM+QD+AV Sbjct: 506 HLKMALRDGQATLDTIGFGFGAYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQDIAVD 565 Query: 538 KPQLFDLRGAADAVKQAAQLHELLKPYSGVKPLRTAAVFQNSRLSPMGALQGMSLWVYDE 597 QLFD R + A+L + T F L SL Y E Sbjct: 566 AWQLFDWRSMRNVESNLAELS---------REKITMVYFSEE------VLNKFSLEEYKE 610 Query: 598 DAGISPVRHHPADSEDAQISLLCLLDMPETPEQLDALL-AAFPQADNIALLHSIRDGRDR 656 H ++ D + LLD+P++ ++L L A FP I L + Sbjct: 611 QLI------HASEVTDLDGRYIVLLDLPKSTDELRGLFEAGFPA--RIYTLFYQENNHLF 662 Query: 657 LQMPTRDHFKVLYKSIAALATAPVPEHELLLRLTRQSSMGMRMLAKMLDVFEELEFIDRS 716 +PTR+HFK Y + A + +H +L R + M VF ELEF+ Sbjct: 663 STVPTREHFKWYYSFLHQKAPFSLRQHG--EQLCRHKGWSKDTVNFMTQVFFELEFVTIK 720 Query: 717 RGTITFVTQPSAKSLTASQQFVRLGKTAEMEQYFMESSRSELQEWMLSRR--LEVSRVG 773 G I + + L S + ++E+ + S+ +L W + R EV ++G Sbjct: 721 DGVIFMAEEMKKRDLIESNTYREKMNHLQLEKELIYSTYQQLYTWFETIRNHKEVEQLG 779 >C5D515.1 C5D515_9BACI Single-stranded-DNA-specific exonuclease RecJ Length = 785 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 322/781 (41%), Positives = 459/781 (58%), Gaps = 51/781 (6%) Query: 1 LSSLLVKRGMDTPDKALLFMEGGEGEGHDPFLLKGMAEAVPRIRKALQDEEHILVYGDYD 60 ++ LLV RG+ T ++A F+ + HDPFLL GM A+ RI++A+Q EHILVYGDYD Sbjct: 31 IAKLLVHRGVRTVEEANAFLYPLKQPFHDPFLLDGMERAIERIQRAIQHGEHILVYGDYD 90 Query: 61 ADGVSSTALMIYLLRYLGASFDIYIPHRANEGYGLHNHALDWAKQQGVSLIITVDTGISA 120 ADGVSST +M+ L+ GA D YIP+R EGYG + +A WAK+QG SLIITVD GI+A Sbjct: 91 ADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGYGPNENAFRWAKEQGFSLIITVDNGIAA 150 Query: 121 YHQIAYANGLGMDVIVTDHHEPPELLPEAYALINPKLPDCPYPFKGLAGVGVAYKLAQAL 180 ++A AN LGMDVI+TDHHE LPEAY +I+PK P YPF+ LAGVGVA+K+A AL Sbjct: 151 VKEVALANELGMDVIITDHHEVGPALPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHAL 210 Query: 181 LGDKVPVEWHEIAAIGTVADLMPLQDENRSIVRKGLSSMRNSPFPGIRALLGVSGITMET 240 LGD VP + ++ AIGT+ADL+ L ENR +V +GL +RN+ G+RAL GI + Sbjct: 211 LGD-VPRHFLDVVAIGTIADLVSLTGENRLLVAQGLEQLRNTKRIGLRALCKQCGIEAKE 269 Query: 241 VSAVNIAFGMAPRINASGRLDHAGRAVTLLTTENPXXXXXXXXXXXXXNKERQLVVERIV 300 ++ + F +APR+NA GRL A AV LL TE N+ERQ +V +I Sbjct: 270 INEQTVGFVIAPRMNAVGRLGEATPAVRLLMTEKEEEAQRLAKEMDDLNRERQQLVAKIA 329 Query: 301 TEAAAMLELQIQQDKLP----DIIVLAQQGWNVGVVGIVASKLLERYYRPVIILDIHPET 356 EAA QI ++ P ++V+A++GWN GV+GIVAS+L+E++YRP I+L I E Sbjct: 330 EEAA-----QIVNEQFPPSENKVLVIAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDSEK 384 Query: 357 GMCKGSARSIPGLDIYEALSSCADLMDHFGGHPAAAGMSLHQDKLEEFAAALNDYAAKVL 416 G+ KGSARSI G D++ +LS+C D++ HFGGHP AAGM+L D ++E LN A +L Sbjct: 385 GIAKGSARSIHGFDMFSSLSTCRDILPHFGGHPMAAGMTLSVDHIDELRQRLNALADDML 444 Query: 417 TPEHFLPVTEADEEAAIADLSLQATLEMDRLAPFGMANPVPKFIVRGAAVKETRKMGQDG 476 T + F P+T D +++DL+L ++++ APFG+ N P F++ +V+ R++G D Sbjct: 445 TADDFTPITPIDAVCSVSDLTLSVAEQLEKFAPFGVDNAKPLFLMENVSVETIRRIGADQ 504 Query: 477 KHLKLVLQQDSHTIEVVAFGKGGLAELLPGGTLIDILAELSVNEWNGSRKPQLMLQDLAV 536 HLK V Q+ I+ V FG G L + + + ++ EL VNEWN RKPQLM+ D+AV Sbjct: 505 SHLKAVFAQNGAAIDSVGFGFGYLCDEIAPDAKVSVVGELMVNEWNNLRKPQLMICDVAV 564 Query: 537 PKPQLFDLRGAADAVKQAAQLHELLKPYSGVKPLRTAAVFQNSRLSPM---GALQGMSLW 593 + QL+D+RG D V+PL A++ ++ R+ M G + L Sbjct: 565 HECQLYDIRGMRD-----------------VRPL-IASLPKDKRMLIMFREGTADALGLE 606 Query: 594 VYDEDAGISPVRHHPADSEDAQISLLC-------LLDMPETPEQLDALLAAFPQADNIAL 646 Y E+ ++ A E+A S LC LLDMP + E + LL + A AL Sbjct: 607 AYKEEI------YYTASVEEA--SRLCLDNRYVVLLDMPTSLEIIKMLLRSSLPARIYAL 658 Query: 647 LHSIRDGRDRLQMPTRDHFKVLYKSIAALATAPVPEH-ELLLRLTRQSSMGMRMLAKMLD 705 + R+ +PTRDHFK Y + + ++ L R + +R +AK Sbjct: 659 FYQ-RETHFFRTLPTRDHFKWFYAFLRKKGVFNLAKYGGELARARGWTEETVRFMAK--- 714 Query: 706 VFEELEFIDRSRGTITFVTQPSAKSLTASQQFVRLGKTAEMEQYFMESSRSELQEWMLSR 765 VF ELEFI + G ++ V QP+ + L+ S + E+E F+ S+ +L+ + Sbjct: 715 VFLELEFITQQDGVVSLVPQPAKRDLSESPTYRFKQAQFELENLFLYSTYEQLKRCLFEM 774 Query: 766 R 766 + Sbjct: 775 K 775 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,440,866,718 Number of extensions: 189640742 Number of successful extensions: 452696 Number of sequences better than 1.0e-05: 1449 Number of HSP's gapped: 444869 Number of HSP's successfully gapped: 1494 Length of query: 773 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 629 Effective length of database: 1,704,070,043 Effective search space: 1071860057047 Effective search space used: 1071860057047 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)