BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0265.0016.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFI8.1 B3KFI8_9BACI Adenine phosphoribosyltransferase EC=2.4.2.7 285 1e-75 B1DDM7.1 B1DDM7_9BACL Adenine phosphoribosyltransferase EC=2.4.2.7 261 2e-68 C0ZAP9.1 APT_BREBN Adenine phosphoribosyltransferase EC=2.4.2.7 249 9e-65 A8VTX1.1 A8VTX1_9BACI S-adenosylmethionine--tRNA-ribosyltransfer... 231 2e-59 A1HT93.1 A1HT93_9FIRM Adenine phosphoribosyltransferase EC=2.4.2.7 226 7e-58 >B3KFI8.1 B3KFI8_9BACI Adenine phosphoribosyltransferase EC=2.4.2.7 Length = 171 Score = 285 bits (729), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 140/171 (81%), Positives = 157/171 (91%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 MDFKD IRVIPDFPQ GISFKDITTLLK+GE YR+AI+ELK LV+ L+IDVIAGPEARGF Sbjct: 1 MDFKDYIRVIPDFPQAGISFKDITTLLKNGEVYRKAIEELKVLVSDLKIDVIAGPEARGF 60 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 VVGAPLAYALGVGF PIRKSGKLPY+TIEVGYDLEYGKD LA+HTDA++ GQNVLIADDL Sbjct: 61 VVGAPLAYALGVGFAPIRKSGKLPYETIEVGYDLEYGKDRLAMHTDAIEKGQNVLIADDL 120 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTYE 171 LATGGTIATSV+L++QLGGNVVGAAF+IELT L GR+KL I+V +L+ YE Sbjct: 121 LATGGTIATSVNLIRQLGGNVVGAAFMIELTDLNGRSKLDDIDVFTLMQYE 171 >B1DDM7.1 B1DDM7_9BACL Adenine phosphoribosyltransferase EC=2.4.2.7 Length = 173 Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/170 (74%), Positives = 147/170 (86%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 ++FKD IRVIPDFPQPGI FKDITTLLKDG+ YR AI++++ V HL+ID+IAGPEARGF Sbjct: 4 INFKDYIRVIPDFPQPGIRFKDITTLLKDGDVYRAAIEDIRKAVEHLKIDIIAGPEARGF 63 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 V+GAPLA LGVGF PIRKSGKLP +TI+ YDLEYG D+LA+H DA+ PGQ VLIADDL Sbjct: 64 VIGAPLATTLGVGFAPIRKSGKLPGETIQASYDLEYGNDSLAMHKDAISPGQRVLIADDL 123 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTY 170 LATGGTIATS++LV+QLGG VVGAAFLIEL+ L GR KL G+EV SL+TY Sbjct: 124 LATGGTIATSMNLVRQLGGEVVGAAFLIELSYLTGREKLEGVEVFSLVTY 173 >C0ZAP9.1 APT_BREBN Adenine phosphoribosyltransferase EC=2.4.2.7 Length = 170 Score = 249 bits (635), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 119/170 (70%), Positives = 141/170 (82%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 MDFK IRVIPDFPQPGI FKDITTLLKDG AY+ AI +L +Q DVIAGPEARGF Sbjct: 1 MDFKQYIRVIPDFPQPGIRFKDITTLLKDGPAYKAAIQDLAVFAREVQADVIAGPEARGF 60 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 VVGAPL+Y +G+GFVPIRKSGKLPY++I+ YDLEYGKD LA+H DA++PGQ VLIADDL Sbjct: 61 VVGAPLSYEMGIGFVPIRKSGKLPYESIKANYDLEYGKDALAVHVDAIQPGQRVLIADDL 120 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTY 170 LATGGTI T+++L++QLGG VVGAAF IEL+ L GR+K+ I + SL+ Y Sbjct: 121 LATGGTIETTINLIEQLGGKVVGAAFFIELSYLDGRSKIGEIPIKSLVQY 170 >A8VTX1.1 A8VTX1_9BACI S-adenosylmethionine--tRNA-ribosyltransferase-isomerase EC=2.4.2.7 Length = 170 Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 108/170 (63%), Positives = 136/170 (80%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 MDFK++I V+ DFP GISFKDITTL+++GE YR+AIDE+ ++DV+ GPEARGF Sbjct: 1 MDFKEHITVVEDFPHEGISFKDITTLMENGEVYRKAIDEMVTFAKKREVDVVVGPEARGF 60 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 VVG P++YAL GFVP+RK+GKLP + +EV Y LEYGKD+L IH D++KPGQ VLI DDL Sbjct: 61 VVGCPVSYALEAGFVPVRKAGKLPREVLEVDYGLEYGKDSLNIHKDSIKPGQKVLITDDL 120 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTY 170 LATGGTI ++S+V++LGG VVG AFLIEL+ L GR LS +VHSL+TY Sbjct: 121 LATGGTIQATISMVEELGGIVVGIAFLIELSFLEGRKNLSKYDVHSLVTY 170 >A1HT93.1 A1HT93_9FIRM Adenine phosphoribosyltransferase EC=2.4.2.7 Length = 170 Score = 226 bits (575), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 110/170 (64%), Positives = 129/170 (75%) Query: 1 MDFKDNIRVIPDFPQPGISFKDITTLLKDGEAYRRAIDELKALVAHLQIDVIAGPEARGF 60 M+FKDNIR+IPDFP+PGI FKDITTLLKDG + +AID L A A QID++ GPEARGF Sbjct: 1 MNFKDNIRIIPDFPEPGIRFKDITTLLKDGAVFHQAIDALCAAYAEEQIDLVVGPEARGF 60 Query: 61 VVGAPLAYALGVGFVPIRKSGKLPYDTIEVGYDLEYGKDTLAIHTDAVKPGQNVLIADDL 120 VGAP+AY LG GFVP+RK GKLP +T+ Y LEYGKD L IH DA+ PGQ VLI DDL Sbjct: 61 AVGAPVAYRLGAGFVPVRKPGKLPAETLRYEYTLEYGKDALEIHRDAIIPGQRVLIVDDL 120 Query: 121 LATGGTIATSVSLVKQLGGNVVGAAFLIELTQLAGRNKLSGIEVHSLLTY 170 LATGGT ++ +V+QLGG VVG AFLIEL+ L GRN+L + SL Y Sbjct: 121 LATGGTTEATIRMVEQLGGKVVGLAFLIELSYLNGRNRLKDYRIVSLAVY 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.141 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,062,126,508 Number of extensions: 43601998 Number of successful extensions: 128357 Number of sequences better than 1.0e-05: 1614 Number of HSP's gapped: 128314 Number of HSP's successfully gapped: 1615 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)