BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0265.0015.p (434 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFI9.1 B3KFI9_9BACI Uracil-xanthine permease 615 e-174 B1DM72.1 B1DM72_9BACL Uracil-xanthine permease 544 e-153 A4J448.1 A4J448_DESRM Uracil-xanthine permease 514 e-144 B6FF47.1 B6FF47_9ENTR Putative uncharacterized protein 511 e-143 A7ML16.1 A7ML16_ENTS8 Putative uncharacterized protein 508 e-142 >B3KFI9.1 B3KFI9_9BACI Uracil-xanthine permease Length = 432 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 327/430 (76%), Positives = 377/430 (87%), Gaps = 6/430 (1%) Query: 1 LQREIQVNEKLPWGPGFLLSLQHLFAMFGSTVLVPNLFGVDPGMILLMNGIGTLLYILIC 60 +QREIQV+EKLP+GPGFLLSLQHLFAMFGSTVLVPN+FGVDPGMILLMNGIGTLLYI +C Sbjct: 1 MQREIQVDEKLPFGPGFLLSLQHLFAMFGSTVLVPNIFGVDPGMILLMNGIGTLLYIFLC 60 Query: 61 RGKIPAYLGSSFAFISPVLGVLEKHQGDHQHGYSLALGAFIVTGVIFILVALIVRYAGTG 120 +GKIPAYLGSSFAFISPVL VL GD + Y ALGAFIVTG+IF +VA IV+YAGT Sbjct: 61 KGKIPAYLGSSFAFISPVLIVL---AGDPEANYGKALGAFIVTGIIFCIVAFIVKYAGTK 117 Query: 121 WIDVVFPPAVMGAIVATIGLELVPVAARMSGLIAPEGATDWTPDGKAITLSMVTLGVTVI 180 WID VFPPAVMGAI+A IGLELVPVAA M+G + EG + D K IT+S+VTLGVTV+ Sbjct: 118 WIDFVFPPAVMGAIIAMIGLELVPVAAGMAGFLPEEGQSI---DPKIITISLVTLGVTVL 174 Query: 181 GAVLFRGFPKIIHILIGIVTGYVLAYIMQVVNTDAISSAHFFSHPTIITPSFDWQVIFTI 240 G++LFRGF KIIHILIGIV GY L++ + VV+T+ I++A F S P + TP FD I+TI Sbjct: 175 GSILFRGFAKIIHILIGIVVGYALSFALGVVDTEKIANAKFLSAPELTTPVFDSGAIWTI 234 Query: 241 IPVSLVVIVEHIGHLLVTSNIVGKDLTKEPGLDRSLMGNGISTILSGFFGSTPNTTYGEN 300 I VSLVVIVEHIGHLLVTSNIVGKDL+K+PGL RSL+GNGISTILSGF GSTPNTTYGEN Sbjct: 235 ILVSLVVIVEHIGHLLVTSNIVGKDLSKDPGLHRSLLGNGISTILSGFVGSTPNTTYGEN 294 Query: 301 IGVMALTKVYSVYVIGGAAVIAILLSFSGTFSSIIANIPQPVMGGVSLLLFGVIAASGLR 360 IGVMALTKVYSV+VIGGAA+IAI+LSFSGTFS+++ANIP PVMGGVSLLLFGVIAASGLR Sbjct: 295 IGVMALTKVYSVFVIGGAAIIAIILSFSGTFSAVVANIPTPVMGGVSLLLFGVIAASGLR 354 Query: 361 IFVEQKVDFSKATNMILATLVLVVGISGISLTIYGVQLKGMALATIVGMVLSLLFKLIEV 420 IFVEQKVDFSKA+NMILAT+VLV GISG++L I V+LKGMALATIVG+++++LFKL E+ Sbjct: 355 IFVEQKVDFSKASNMILATIVLVTGISGVTLKINTVELKGMALATIVGVIMAVLFKLFEI 414 Query: 421 LGLSNEQDSE 430 GLSNE++ E Sbjct: 415 TGLSNEKNDE 424 >B1DM72.1 B1DM72_9BACL Uracil-xanthine permease Length = 435 Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust. Identities = 279/435 (64%), Positives = 344/435 (79%), Gaps = 6/435 (1%) Query: 3 REIQVNEKLPWGPGFLLSLQHLFAMFGSTVLVPNLFGVDPGMILLMNGIGTLLYILICRG 62 +EI V+++ P G +LS+QHLFAMFGSTVLVPNL GVDP + LLMNGIGTLLY+ I +G Sbjct: 4 QEIGVHDRPPMGQSLMLSIQHLFAMFGSTVLVPNLLGVDPAICLLMNGIGTLLYLFIVKG 63 Query: 63 KIPAYLGSSFAFISPVLGVLEKHQGDHQHGYSLALGAFIVTGVIFILVALIVRYAGTGWI 122 KIPAYLGSSFAFI+P V+ H H GY+ ALG FI GV+F +VALI++ AGTGWI Sbjct: 64 KIPAYLGSSFAFIAPAGAVIGNHA-SHSDGYAAALGGFIAAGVVFTVVALIIQVAGTGWI 122 Query: 123 DVVFPPAVMGAIVATIGLELVPVAARMSGLI-APEGATD--WTPDGKAITLSMVTLGVTV 179 +V+FPPA MGAIVA IGLEL+PVAA M+G I AP D WTPDG AIT+S+VTL +TV Sbjct: 123 NVIFPPAAMGAIVAVIGLELIPVAAGMAGWIKAPSAPADQVWTPDGTAITISIVTLLITV 182 Query: 180 IGAVLFRGFPKIIHILIGIVTGYVLAYIMQVVNTDAISSAHFFSHPTIITPSFDWQVIFT 239 +G+VLFRGF +II IL+GIV GY+L+Y + N D ++++++ + PT P+F+W I T Sbjct: 183 LGSVLFRGFMRIIPILVGIVCGYLLSYFLGYTNFDNVTTSNWLAAPTFTAPTFEWAAILT 242 Query: 240 IIPVSLVVIVEHIGHLLVTSNIVGKDLTKEPGLDRSLMGNGISTILSGFFGSTPNTTYGE 299 I+P SLVV+ EHIGHL+VT NIV KDL+K+PGL RSL+GNGIST+LSGF GSTPNTTYGE Sbjct: 243 IVPASLVVLAEHIGHLIVTGNIVKKDLSKDPGLHRSLLGNGISTLLSGFLGSTPNTTYGE 302 Query: 300 NIGVMALTKVYSVYVIGGAAVIAILLSFSGTFSSIIANIPQPVMGGVSLLLFGVIAASGL 359 NIGV+A+T+VYS +VIGGAAV AI+LSF G FS++IA IP PVMGGVSLLLFGVIAASGL Sbjct: 303 NIGVLAITRVYSTFVIGGAAVFAIVLSFFGKFSALIAGIPAPVMGGVSLLLFGVIAASGL 362 Query: 360 RIFVEQKVDFSKATNMILATLVLVVGISGISLTIYGVQLKGMALATIVGMVLSLLFKLIE 419 R+ VE K+D+SK TN+ L T+VLV G+SG +TI L GMALAT+ ++LSLLFK+ E Sbjct: 363 RMLVESKIDYSKPTNLYLTTVVLVTGLSGAKITIGDFSLSGMALATVTAIILSLLFKIFE 422 Query: 420 VLGLSNEQDSEKSAH 434 + LSN DSE S H Sbjct: 423 ITRLSN--DSEASGH 435 >A4J448.1 A4J448_DESRM Uracil-xanthine permease Length = 422 Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust. Identities = 275/427 (64%), Positives = 337/427 (78%), Gaps = 7/427 (1%) Query: 2 QREIQVNEKLPWGPGFLLSLQHLFAMFGSTVLVPNLFGVDPGMILLMNGIGTLLYILICR 61 +REIQV E+LP LSLQHLFAMFG+TVLVP LF VDP ILL NGIGTLLYI IC+ Sbjct: 3 KREIQVEERLPLLQTLPLSLQHLFAMFGATVLVPILFKVDPATILLFNGIGTLLYIFICK 62 Query: 62 GKIPAYLGSSFAFISPVLGVLEKHQGDHQHGYSLALGAFIVTGVIFILVALIVRYAGTGW 121 G+IPAYLGSSFAFISPV+ VL K+ YS ALG FIV G+IF VAL++ GT W Sbjct: 63 GRIPAYLGSSFAFISPVIAVLSKYD------YSAALGGFIVVGLIFSAVALLIGAVGTKW 116 Query: 122 IDVVFPPAVMGAIVATIGLELVPVAARMSGLIAPEGATDWTPDGKAITLSMVTLGVTVIG 181 IDVVFPPA MGAIVA IGLEL PVAA+M+GL A + T + D K IT+SM TLGVT++G Sbjct: 117 IDVVFPPAAMGAIVAVIGLELAPVAAQMAGLAAAD-PTKYVADPKVITVSMFTLGVTILG 175 Query: 182 AVLFRGFPKIIHILIGIVTGYVLAYIMQVVNTDAISSAHFFSHPTIITPSFDWQVIFTII 241 ++FRGF II IL+G+++GYVL+ M +V+T+AI+ A +F+ PT P+FD I II Sbjct: 176 NIVFRGFLAIIPILVGVISGYVLSIFMGLVSTEAIAQASWFAVPTFYRPTFDLNAIIIII 235 Query: 242 PVSLVVIVEHIGHLLVTSNIVGKDLTKEPGLDRSLMGNGISTILSGFFGSTPNTTYGENI 301 P +LVVIVEH+GHL VTSNIV +DL+K+PGL RSL+GNGIST+LSGFFGSTPNTTYGENI Sbjct: 236 PAALVVIVEHVGHLFVTSNIVSRDLSKDPGLHRSLLGNGISTMLSGFFGSTPNTTYGENI 295 Query: 302 GVMALTKVYSVYVIGGAAVIAILLSFSGTFSSIIANIPQPVMGGVSLLLFGVIAASGLRI 361 GVMALTKVYS +VIGGAA++AI+LSF G S+ I +IP PVMGGVSLLLFGVIAASG+R+ Sbjct: 296 GVMALTKVYSTWVIGGAAILAIILSFVGKLSAAIQSIPTPVMGGVSLLLFGVIAASGIRM 355 Query: 362 FVEQKVDFSKATNMILATLVLVVGISGISLTIYGVQLKGMALATIVGMVLSLLFKLIEVL 421 VE KVD+SKA+N+IL ++V+++G+SG + + V LKGM LAT+V M+LSL F+L+E Sbjct: 356 LVEAKVDYSKASNLILTSIVMIIGVSGAQIQLGAVSLKGMGLATVVAMILSLFFRLLEQA 415 Query: 422 GLSNEQD 428 +SNE Sbjct: 416 NISNENK 422 >B6FF47.1 B6FF47_9ENTR Putative uncharacterized protein Length = 429 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 262/437 (59%), Positives = 340/437 (77%), Gaps = 14/437 (3%) Query: 2 QREIQVNEKLPWGPGFLLSLQHLFAMFGSTVLVPNLFGVDPGMILLMNGIGTLLYILICR 61 +R I V+E+ P LSLQHLFAMFG+TVLVP +F ++P +LL NG+GTLLY+ IC+ Sbjct: 3 RRTIGVSERPPLLQTIPLSLQHLFAMFGATVLVPMIFHINPATVLLFNGVGTLLYLFICK 62 Query: 62 GKIPAYLGSSFAFISPVLGVLEKHQGDHQHGYSLALGAFIVTGVIFILVALIVRYAGTGW 121 GKIPAYLGSSFAFISPVL +L GY +ALG FI+ GV+F LV+ IV+ AGTGW Sbjct: 63 GKIPAYLGSSFAFISPVLLLLPL-------GYEVALGGFIMCGVLFCLVSFIVKKAGTGW 115 Query: 122 IDVVFPPAVMGAIVATIGLELVPVAARMSGLIAPEGATDWTPDGKAITLSMVTLGVTVIG 181 +DV+FPPA MGAIVA IGLEL VAA M+GL+ +G + P+ KAI +S+VTLGVTV G Sbjct: 116 LDVMFPPAAMGAIVAVIGLELARVAANMAGLLPADGQS---PNSKAIIISLVTLGVTVFG 172 Query: 182 AVLFRGFPKIIHILIGIVTGYVLAYIMQVVNTDAISSAHFFSHPTIITPSFDWQVIFTII 241 +VLFRGF II ILIG++ GY L++ M +VNTD I++AH+F+ PT TP F+W I TI+ Sbjct: 173 SVLFRGFLAIIPILIGVLAGYALSFAMGIVNTDLIANAHWFALPTFYTPRFEWFAILTIL 232 Query: 242 PVSLVVIVEHIGHLLVTSNIVGKDLTKEPGLDRSLMGNGISTILSGFFGSTPNTTYGENI 301 P +LVVI EH+GHL+VT+NIV +DL ++PGL RS+ NG+STI+SGFFGSTPNTTYGENI Sbjct: 233 PAALVVIAEHVGHLVVTANIVKRDLIRDPGLHRSMFANGLSTIISGFFGSTPNTTYGENI 292 Query: 302 GVMALTKVYSVYVIGGAAVIAILLSFSGTFSSIIANIPQPVMGGVSLLLFGVIAASGLRI 361 GVMA+T+VYS +VIGGAA+IAILLS G ++ I IP+PVMGGVSLLL+GVI ASG+R+ Sbjct: 293 GVMAITRVYSTWVIGGAAIIAILLSCVGKLAASIQAIPEPVMGGVSLLLYGVIGASGIRV 352 Query: 362 FVEQKVDFSKATNMILATLVLVVGISGISLTIYGVQLKGMALATIVGMVLSLLFKLIEVL 421 +E KVD++KA N+IL +++L++G+SG ++ I +LKGMALATIVG+ LSL+FKLI ++ Sbjct: 353 LIESKVDYNKAQNLILTSVILIIGVSGATVHIGAAELKGMALATIVGIALSLIFKLISIV 412 Query: 422 GLSNE----QDSEKSAH 434 E + EK++H Sbjct: 413 RPEEEVLDADEGEKTSH 429 >A7ML16.1 A7ML16_ENTS8 Putative uncharacterized protein Length = 429 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 268/437 (61%), Positives = 334/437 (76%), Gaps = 14/437 (3%) Query: 2 QREIQVNEKLPWGPGFLLSLQHLFAMFGSTVLVPNLFGVDPGMILLMNGIGTLLYILICR 61 +R I V+E+ P LSLQHLFAMFG+TVLVP LF ++P +LL NGIGTLLY+ IC+ Sbjct: 3 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILFHINPATVLLFNGIGTLLYLFICK 62 Query: 62 GKIPAYLGSSFAFISPVLGVLEKHQGDHQHGYSLALGAFIVTGVIFILVALIVRYAGTGW 121 GKIPAYLGSSFAFISPVL +L GY +ALG FIV G +F +VALIV+ AGTGW Sbjct: 63 GKIPAYLGSSFAFISPVLLLLPL-------GYEMALGGFIVCGALFCIVALIVKKAGTGW 115 Query: 122 IDVVFPPAVMGAIVATIGLELVPVAARMSGLIAPEGATDWTPDGKAITLSMVTLGVTVIG 181 +DV+FPPA MGAIVA IGLEL VAA M+GL+ EG T D IT+S+VTL VTV G Sbjct: 116 LDVMFPPAAMGAIVAVIGLELAGVAANMAGLLPAEGQTA---DSTTITISLVTLAVTVFG 172 Query: 182 AVLFRGFPKIIHILIGIVTGYVLAYIMQVVNTDAISSAHFFSHPTIITPSFDWQVIFTII 241 +VLFRGF II ILIG++ GY L++ M VV+T I++AH+F+ PT TP F+W IFTI+ Sbjct: 173 SVLFRGFLAIIPILIGVLAGYALSFAMGVVDTTPIANAHWFALPTFYTPRFEWFAIFTIL 232 Query: 242 PVSLVVIVEHIGHLLVTSNIVGKDLTKEPGLDRSLMGNGISTILSGFFGSTPNTTYGENI 301 P +LVVI EH+GHL+VT+NIV KDL ++PGL RS+ NG ST++SGFFGSTPNTTYGENI Sbjct: 233 PAALVVIAEHVGHLVVTANIVKKDLIRDPGLHRSMFANGFSTMISGFFGSTPNTTYGENI 292 Query: 302 GVMALTKVYSVYVIGGAAVIAILLSFSGTFSSIIANIPQPVMGGVSLLLFGVIAASGLRI 361 GVMA+T+VYS +VIGGAA+IAILLS G ++ I IP PVMGGVSLLL+GVI ASG+R+ Sbjct: 293 GVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQIIPVPVMGGVSLLLYGVIGASGIRV 352 Query: 362 FVEQKVDFSKATNMILATLVLVVGISGISLTIYGVQLKGMALATIVGMVLSLLFKLIEVL 421 +E KVD+SKA N+IL +++L++G+SG + I +LKGMALATIVG+ LSL+FKLI VL Sbjct: 353 LIESKVDYSKAQNLILTSVILIIGVSGAKVHIGAAELKGMALATIVGVALSLIFKLINVL 412 Query: 422 G----LSNEQDSEKSAH 434 + + + EKS H Sbjct: 413 RPEETVLDADEHEKSPH 429 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.143 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,548,027,040 Number of extensions: 113567458 Number of successful extensions: 481535 Number of sequences better than 1.0e-05: 2699 Number of HSP's gapped: 474491 Number of HSP's successfully gapped: 2705 Length of query: 434 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 295 Effective length of database: 1,751,175,118 Effective search space: 516596659810 Effective search space used: 516596659810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)