BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0265.0014.p (749 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFJ0.1 B3KFJ0_9BACI RelA/SpoT family protein EC=2.7.6.5 1315 0.0 B1DDM1.1 B1DDM1_9BACL (P)ppGpp synthetase I, SpoT/RelA EC=2.7.6.5 1246 0.0 C5D513.1 C5D513_9BACI (P)ppGpp synthetase I, SpoT/RelA EC=2.7.6.5 971 0.0 Q9KDH1.1 Q9KDH1_BACHD GTP pyrophosphokinase (Stringent response) 969 0.0 B7GFP1.1 B7GFP1_ANOFW GTP pyrophosphokinase (PpGpp synthetase) 964 0.0 >B3KFJ0.1 B3KFJ0_9BACI RelA/SpoT family protein EC=2.7.6.5 Length = 725 Score = 1315 bits (3404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/727 (86%), Positives = 677/727 (93%), Gaps = 3/727 (0%) Query: 24 MGIEQLTEKAGAYIKEKDLLRIREAYEFADQAHHGQVRKSGEPYILHPLAVADIVVNMQM 83 MGIE+L EKA AYIKE DLLRI+EAYEFA+QAHHGQVRKSGEPYILHPLAVADIVVNMQM Sbjct: 1 MGIERLLEKASAYIKEPDLLRIQEAYEFAEQAHHGQVRKSGEPYILHPLAVADIVVNMQM 60 Query: 84 DVISIIAALLHDVVEDTTVSLEQIREKFGDTCAMLVDGLTKLERIRFRSKEEQQNENYRK 143 D +SIIAALLHDVVEDTTVSLEQIRE+FGDTCAMLVDGLTKLERI+FRSKEEQQNENYRK Sbjct: 61 DTLSIIAALLHDVVEDTTVSLEQIRERFGDTCAMLVDGLTKLERIQFRSKEEQQNENYRK 120 Query: 144 MFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIADRLGISAIKWE 203 MFIAMA+DIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIA RLGISAIKWE Sbjct: 121 MFIAMARDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIAHRLGISAIKWE 180 Query: 204 MEDIALRYLNPQQYYRIANLVHKKRAEREQFIDSVIGRIRAKLDEMGIEGDLSGRPKHIY 263 MEDIALRYLNPQQYYRIANL+HKKRAEREQ+ID+VI IR KLDEMGI+ DLSGRPKHIY Sbjct: 181 MEDIALRYLNPQQYYRIANLMHKKRAEREQYIDNVIVCIREKLDEMGIQADLSGRPKHIY 240 Query: 264 SVYNKMNTKNKQFNEIYDLLAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKAN 323 SV+ KM KNKQFNEIYDLLAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPK N Sbjct: 241 SVFKKMTVKNKQFNEIYDLLAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKTN 300 Query: 324 MYQSLHTTVVGPGGEPTEVQIRTWEMHRTAEFGIAAHWAYKEGSSNNVNP-ENRMPFFRE 382 MYQSLHTTVVGP GEPTEVQIRTWEMHRTAEFGIAAHWAYKEGS+ N +N+M FFRE Sbjct: 301 MYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEFGIAAHWAYKEGSAGNGGSFDNKMTFFRE 360 Query: 383 ILELQHEAKDAEEFVESLKMDFFSDLVFVFTPKGEVVELPAGSVPLDFAFRIHTEVGNRT 442 ILELQHE KDA EFVESLKMDFFSDLVFVFTPKGEV+ELP+GSVPLDFA+RIHTEVGNRT Sbjct: 361 ILELQHETKDASEFVESLKMDFFSDLVFVFTPKGEVIELPSGSVPLDFAYRIHTEVGNRT 420 Query: 443 IGSKVNGRIVPLDHKLKTGDIVEILTSKNSYGPSRDWLKIAQSSHARSKIKQWFKKEKRE 502 IG+KVNGRIVPLDH+LKTGDIVEILTSK+SYGPS+DWLKIAQSSHARSKIKQWFKKEKRE Sbjct: 421 IGAKVNGRIVPLDHQLKTGDIVEILTSKHSYGPSQDWLKIAQSSHARSKIKQWFKKEKRE 480 Query: 503 ENVEKGREAIERELKRQNVEVSDWLTEDKLSDAAKKFAFNDVEDMLSAVGFGGITAAQIA 562 ENVEKGRE +ERE+KR ++VS+W T+DKL +AAKKFAFND+EDMLSAVGFGGITAAQI Sbjct: 481 ENVEKGREMLEREIKRLGLDVSEWTTDDKLMEAAKKFAFNDIEDMLSAVGFGGITAAQIC 540 Query: 563 SKLTEKLRKEQEEAAGHLELTTQMKEIKSSGEKRNQPTNGVRVKGIDNLLVRFARCCNPV 622 +K+TEKLRKEQEE A LELT++MKEIK + EKR++PTNGVRVKGIDNLLVRFARCCNPV Sbjct: 541 TKVTEKLRKEQEE-ANQLELTSEMKEIKPA-EKRSRPTNGVRVKGIDNLLVRFARCCNPV 598 Query: 623 PGDDIVGYVTRGRGVSVHREDCPNIPADGDGEESARVIEVEWEGSMEANYSVDIEITGHD 682 PGDDIVGYVTRGRGVSVHR DC N+P +GE++ARVIEVEWE ++EANYSVDIE+TGHD Sbjct: 599 PGDDIVGYVTRGRGVSVHRSDCANLPTTDEGEDAARVIEVEWETAVEANYSVDIEVTGHD 658 Query: 683 RNGLLNEVLQAVSESKTNISAVTGRSDKNKMAMIHMTILIRNTDHLQSXXXXXXXXXXXY 742 RNGLLNEVLQAVSESKTNISAVTGRSDKNKMAMIHMTILIRNTDHLQS Y Sbjct: 659 RNGLLNEVLQAVSESKTNISAVTGRSDKNKMAMIHMTILIRNTDHLQSVVERIKRVKDVY 718 Query: 743 TVNRIMQ 749 TV+RIMQ Sbjct: 719 TVHRIMQ 725 >B1DDM1.1 B1DDM1_9BACL (P)ppGpp synthetase I, SpoT/RelA EC=2.7.6.5 Length = 758 Score = 1246 bits (3224), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/726 (80%), Positives = 661/726 (91%), Gaps = 2/726 (0%) Query: 24 MGIEQLTEKAGAYIKEKDLLRIREAYEFADQAHHGQVRKSGEPYILHPLAVADIVVNMQM 83 MGIEQL EKA AYIKE+DL+RIREAYEFADQAHHGQVRKSGEPYILHP+AVA+I+V+MQM Sbjct: 32 MGIEQLIEKASAYIKEQDLVRIREAYEFADQAHHGQVRKSGEPYILHPVAVAEIIVDMQM 91 Query: 84 DVISIIAALLHDVVEDTTVSLEQIREKFGDTCAMLVDGLTKLERIRFRSKEEQQNENYRK 143 DV+SIIAALLHDVVEDTTV LE IR KFG+TCAMLVDGLTKLE+I+FRSKEEQQNENYRK Sbjct: 92 DVLSIIAALLHDVVEDTTVDLEVIRAKFGETCAMLVDGLTKLEKIKFRSKEEQQNENYRK 151 Query: 144 MFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIADRLGISAIKWE 203 MF+AMAQDIRVI+IKLADRLHNMRTLK+QSEE+QRRI+YETLEIFCPIA RLGISAIKWE Sbjct: 152 MFLAMAQDIRVILIKLADRLHNMRTLKFQSEEAQRRIAYETLEIFCPIAHRLGISAIKWE 211 Query: 204 MEDIALRYLNPQQYYRIANLVHKKRAEREQFIDSVIGRIRAKLDEMGIEGDLSGRPKHIY 263 MEDIALRYLNPQQYYRIANL+ KKRAERE FI VIGRI+ KL+EMGI+GD+SGRPKHIY Sbjct: 212 MEDIALRYLNPQQYYRIANLMKKKRAERELFISDVIGRIKEKLEEMGIDGDISGRPKHIY 271 Query: 264 SVYNKMNTKNKQFNEIYDLLAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKAN 323 S+Y KM KNKQFNEIYDL+AIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKAN Sbjct: 272 SIYKKMTVKNKQFNEIYDLMAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKAN 331 Query: 324 MYQSLHTTVVGPGGEPTEVQIRTWEMHRTAEFGIAAHWAYKEGS-SNNVNPENRMPFFRE 382 MYQSLHTTV+GP GEPTEVQIRTW+MHRT+E+GIAAHWAYKEG+ N N E++M + RE Sbjct: 332 MYQSLHTTVIGPNGEPTEVQIRTWDMHRTSEYGIAAHWAYKEGTVVPNNNFEDKMSWLRE 391 Query: 383 ILELQHEAKDAEEFVESLKMDFFSDLVFVFTPKGEVVELPAGSVPLDFAFRIHTEVGNRT 442 I+ELQ+EA+DA EF+ESLKMDFF+DLVFVFTP GEV+ELPAGSVPLDFA+RIHTEVGNRT Sbjct: 392 IMELQNEARDASEFMESLKMDFFADLVFVFTPSGEVIELPAGSVPLDFAYRIHTEVGNRT 451 Query: 443 IGSKVNGRIVPLDHKLKTGDIVEILTSKNSYGPSRDWLKIAQSSHARSKIKQWFKKEKRE 502 IG+KVNGRIVPLDHKLKTGDI+EILTSK+SYGPS+DW+KIAQSSHARSKI+QWFK+EKRE Sbjct: 452 IGAKVNGRIVPLDHKLKTGDIIEILTSKHSYGPSQDWVKIAQSSHARSKIRQWFKREKRE 511 Query: 503 ENVEKGREAIERELKRQNVEVSDWLTEDKLSDAAKKFAFNDVEDMLSAVGFGGITAAQIA 562 ENV KGR+ +ERELKR VE S W+++DKL + A KF FND+EDM+SA+GFGGITAAQI Sbjct: 512 ENVAKGRDLLERELKRLGVEPSAWMSDDKLQEVANKFNFNDIEDMMSAIGFGGITAAQIC 571 Query: 563 SKLTEKLRKEQEEAAGHLELTTQMKEIKSSGEKRNQPTNGVRVKGIDNLLVRFARCCNPV 622 ++LTEKLRKE E+ + +ELT++ KE+KS G ++N+PTNGV VKGIDNLLVRFARCCNPV Sbjct: 572 TRLTEKLRKEAEK-SNLIELTSEPKEMKSPGHRKNRPTNGVTVKGIDNLLVRFARCCNPV 630 Query: 623 PGDDIVGYVTRGRGVSVHREDCPNIPADGDGEESARVIEVEWEGSMEANYSVDIEITGHD 682 PGD I+GY+TRGRGVSVHR DC NIP + +GEE+ RVIEVEWE S+E+NYSVDIEITGHD Sbjct: 631 PGDTIIGYITRGRGVSVHRMDCQNIPFNSEGEEADRVIEVEWEDSIESNYSVDIEITGHD 690 Query: 683 RNGLLNEVLQAVSESKTNISAVTGRSDKNKMAMIHMTILIRNTDHLQSXXXXXXXXXXXY 742 R+GLLNEVLQAVSESKTNISAVTGRS KNKMAMIHMT+LIRN DHL S Y Sbjct: 691 RSGLLNEVLQAVSESKTNISAVTGRSVKNKMAMIHMTVLIRNIDHLSSVVEKIKRVQDVY 750 Query: 743 TVNRIM 748 +V RIM Sbjct: 751 SVQRIM 756 >C5D513.1 C5D513_9BACI (P)ppGpp synthetase I, SpoT/RelA EC=2.7.6.5 Length = 732 Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/727 (63%), Positives = 591/727 (81%), Gaps = 11/727 (1%) Query: 27 EQLTEKAGAYIKEKDLLRIREAYEFADQAHHGQVRKSGEPYILHPLAVADIVVNMQMDVI 86 EQ+ E+A Y+ E+D+ I++AYEFA+ AH Q RKSGEPYI+HP+ VA I+V+++MD Sbjct: 10 EQVFEQASCYLSERDVEFIKKAYEFANHAHRDQYRKSGEPYIIHPIQVAGILVDLKMDPA 69 Query: 87 SIIAALLHDVVEDTTVSLEQIREKFGDTCAMLVDGLTKLERIRFRSKEEQQNENYRKMFI 146 +I A LHDVVEDT + E + +FG AMLVDG+TKL +I+++S+EEQQ EN+RKMF+ Sbjct: 70 TIAAGFLHDVVEDTEATKEDLEREFGSEVAMLVDGVTKLGKIKYKSQEEQQAENHRKMFL 129 Query: 147 AMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIADRLGISAIKWEMED 206 AMAQDIRVI+IKLADRLHNMRTLK+ E QRRI+ ETLEIF P+A RLGIS IKWE+ED Sbjct: 130 AMAQDIRVILIKLADRLHNMRTLKHLPIEKQRRIANETLEIFAPLAHRLGISKIKWELED 189 Query: 207 IALRYLNPQQYYRIANLVHKKRAEREQFIDSVIGRIRAKLDEMGIEGDLSGRPKHIYSVY 266 ALRYLNPQQYYRI NL+ KKRAEREQ+++ VI +R +L+E+ I ++SGRPKHIYS+Y Sbjct: 190 TALRYLNPQQYYRIVNLMKKKRAEREQYLEEVIQEVRERLNEVSIPCEISGRPKHIYSIY 249 Query: 267 NKMNTKNKQFNEIYDLLAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKANMYQ 326 KM +NKQFNEIYDLLA+RIIV++IKDCYA LGIIHT WKPMPGRFKDYIAMPK NMYQ Sbjct: 250 RKMVMQNKQFNEIYDLLAVRIIVNSIKDCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMYQ 309 Query: 327 SLHTTVVGPGGEPTEVQIRTWEMHRTAEFGIAAHWAYKEGSSNNVNP-ENRMPFFREILE 385 SLHTTV+GP GEP EVQIRT+EMH+ AEFGIAAHWAYKEG + N E ++ +FREILE Sbjct: 310 SLHTTVIGPKGEPLEVQIRTFEMHQIAEFGIAAHWAYKEGKTIKPNSFEEKLSWFREILE 369 Query: 386 LQHEAKDAEEFVESLKMDFFSDLVFVFTPKGEVVELPAGSVPLDFAFRIHTEVGNRTIGS 445 Q++A +AEEF+ESLKMD FSD+VFVFTPKG+V+ELPAGSVP+DFA+RIH+E+GN+TIG+ Sbjct: 370 WQNDASNAEEFMESLKMDLFSDMVFVFTPKGDVIELPAGSVPIDFAYRIHSEIGNKTIGA 429 Query: 446 KVNGRIVPLDHKLKTGDIVEILTSKNSYGPSRDWLKIAQSSHARSKIKQWFKKEKREENV 505 KVNG++VPLD+KL+TGDIVEILTSK+SYGPS+DWLK+AQ+SHA++KI+Q+FKK++REEN+ Sbjct: 430 KVNGKMVPLDYKLQTGDIVEILTSKHSYGPSQDWLKLAQTSHAKNKIRQFFKKQRREENI 489 Query: 506 EKGREAIERELKRQNVEVSDWLTEDKLSDAAKKFAFNDVEDMLSAVGFGGITAAQIASKL 565 EKGRE +E+E++ +V + LT + + A+KF F++ EDM +AVG+ GITAAQIA +L Sbjct: 490 EKGRELVEKEVRSLGFDVKEILTAENVKRVAEKFNFSNEEDMYAAVGYHGITAAQIAHRL 549 Query: 566 TEKLRKEQEEAAGHLELTTQMKEIK-SSGEKRNQPTNGVRVKGIDNLLVRFARCCNPVPG 624 T+K RK+++ +LT + E K + +KR+ G+RV+G+DNLL+R +RCCNPVPG Sbjct: 550 TDKWRKQRDLEEQQKKLTETIPETKIPTAKKRDY---GIRVQGMDNLLIRLSRCCNPVPG 606 Query: 625 DDIVGYVTRGRGVSVHREDCPNIPADGDGEESARVIEVEWEGSMEAN--YSVDIEITGHD 682 D+I+G++TRGRG+SVHR DCPN+ + E R+I VEWE +++N Y+V+IEITG D Sbjct: 607 DEIIGFITRGRGISVHRADCPNVQTE---EALDRLISVEWESDVQSNREYNVEIEITGFD 663 Query: 683 RNGLLNEVLQAVSESKTNISAVTGRSD-KNKMAMIHMTILIRNTDHLQSXXXXXXXXXXX 741 R GLLNEVLQAV+E+KT+ISAV+GRSD +NK+A IHMTI IRN HLQ Sbjct: 664 RRGLLNEVLQAVNETKTDISAVSGRSDHRNKIATIHMTIAIRNISHLQKVVDRIKQIPDI 723 Query: 742 YTVNRIM 748 Y+V RIM Sbjct: 724 YSVQRIM 730 >Q9KDH1.1 Q9KDH1_BACHD GTP pyrophosphokinase (Stringent response) Length = 728 Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/728 (63%), Positives = 591/728 (81%), Gaps = 8/728 (1%) Query: 24 MGIEQLTEKAGAYIKEKDLLRIREAYEFADQAHHGQVRKSGEPYILHPLAVADIVVNMQM 83 M I+Q+ EKA Y+ E + ++ AYEFA++AH GQ RKSGEPYILHP+ VA I+V++++ Sbjct: 5 MTIDQVLEKASRYLDEHHIEFLQRAYEFAEKAHAGQYRKSGEPYILHPVQVAGIIVDLEL 64 Query: 84 DVISIIAALLHDVVEDTTVSLEQIREKFGDTCAMLVDGLTKLERIRFRSKEEQQNENYRK 143 D ++ AA LHDVVEDT V++E + ++F + AMLVDG+TKL++I+++SKEEQQ EN+RK Sbjct: 65 DPNTVAAAFLHDVVEDTDVTVEALEKEFNEQVAMLVDGVTKLKKIKYKSKEEQQAENHRK 124 Query: 144 MFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIADRLGISAIKWE 203 M +AMA+DIRVI+IKLADRLHNMRTL+Y E QR S ETLEIF P+A RLGIS IKWE Sbjct: 125 MLVAMAKDIRVILIKLADRLHNMRTLRYMPPEKQRITSNETLEIFAPLAHRLGISTIKWE 184 Query: 204 MEDIALRYLNPQQYYRIANLVHKKRAEREQFIDSVIGRIRAKLDEMGIEGDLSGRPKHIY 263 +EDIALRYL+PQQYYRI NL+ KKRAERE++I+ VI +IR +L ++ +E ++SGRPKHIY Sbjct: 185 LEDIALRYLDPQQYYRIVNLMKKKRAEREEYIEDVIDKIRKQLQDIKVEAEISGRPKHIY 244 Query: 264 SVYNKMNTKNKQFNEIYDLLAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKAN 323 S+Y KM +NKQFNEIYDLLA+RIIV NIKDCYA LG+IHT WKPMPGRFKDYIAMPKAN Sbjct: 245 SIYRKMVLQNKQFNEIYDLLAVRIIVKNIKDCYAGLGVIHTCWKPMPGRFKDYIAMPKAN 304 Query: 324 MYQSLHTTVVGPGGEPTEVQIRTWEMHRTAEFGIAAHWAYKEGSSNNVNPENRMPFFREI 383 MYQSLHTTVVGP G+P EVQIRT EMHR AE+G+AAHWAYKEG++ E+++ +FREI Sbjct: 305 MYQSLHTTVVGPNGDPLEVQIRTEEMHRVAEYGVAAHWAYKEGTTLANPMEDKLTWFREI 364 Query: 384 LELQHEAKDAEEFVESLKMDFFSDLVFVFTPKGEVVELPAGSVPLDFAFRIHTEVGNRTI 443 LE Q++ DA+EF+ESLKMD FSD+VFVFTPKG+V+ELP GSVPLDFA+RIHTE+GNR I Sbjct: 365 LEWQNDTNDAQEFMESLKMDLFSDMVFVFTPKGDVIELPRGSVPLDFAYRIHTEIGNRCI 424 Query: 444 GSKVNGRIVPLDHKLKTGDIVEILTSKNSYGPSRDWLKIAQSSHARSKIKQWFKKEKREE 503 G+KVNG++VPLDH+LKTGDIVE+LTSK+SYGPS+DWLKI QSSHA++KIKQWFKKE+REE Sbjct: 425 GAKVNGKMVPLDHQLKTGDIVEVLTSKHSYGPSQDWLKITQSSHAKNKIKQWFKKERREE 484 Query: 504 NVEKGREAIERELKRQNVEVSDWLTEDKLSDAAKKFAFNDVEDMLSAVGFGGITAAQIAS 563 N+ KGRE++E+E++ + + + LT++ + A KF+F EDM +A G+GGI+ QIA+ Sbjct: 485 NIAKGRESVEKEIRILDFDPKEVLTQENIQAVANKFSFAGEEDMFAAAGYGGISPKQIAN 544 Query: 564 KLTEKLRKEQEEAAGHLELTTQMKEIKSSGEKRNQPTNGVRVKGIDNLLVRFARCCNPVP 623 +LTEKLRK+Q++ L + E++S K+ + T GVRVKG+DNLL+R +RCCNPVP Sbjct: 545 RLTEKLRKQQDQEEEQ-SLAEALSEVQSVAPKK-KTTIGVRVKGVDNLLIRLSRCCNPVP 602 Query: 624 GDDIVGYVTRGRGVSVHREDCPNIPADGDGEESARVIEVEWEGSMEA--NYSVDIEITGH 681 GD+IVGY+T+GRGVS+HR+DCPNI + E R++ VEWEG E+ NY+VDIEITG Sbjct: 603 GDEIVGYITKGRGVSIHRQDCPNINTE---EAKTRLLPVEWEGDKESNKNYNVDIEITGF 659 Query: 682 DRNGLLNEVLQAVSESKTNISAVTGRSD-KNKMAMIHMTILIRNTDHLQSXXXXXXXXXX 740 DRNGLLNEVLQAV+ESKT I+AV+GRSD +N++A IHMTI I N DHL Sbjct: 660 DRNGLLNEVLQAVTESKTLINAVSGRSDHRNRVATIHMTISIHNIDHLHKVVEKIKQLKD 719 Query: 741 XYTVNRIM 748 Y+V R+M Sbjct: 720 IYSVRRVM 727 >B7GFP1.1 B7GFP1_ANOFW GTP pyrophosphokinase (PpGpp synthetase) Length = 732 Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/728 (63%), Positives = 581/728 (79%), Gaps = 12/728 (1%) Query: 27 EQLTEKAGAYIKEKDLLRIREAYEFADQAHHGQVRKSGEPYILHPLAVADIVVNMQMDVI 86 EQ+ EKA Y+ + D+ I AYEFA +AH Q RKSGEPYI+HP+ VA I+V+++MD Sbjct: 10 EQVIEKASRYLSKDDVQFIERAYEFAKEAHREQYRKSGEPYIIHPIQVAGILVDLEMDPA 69 Query: 87 SIIAALLHDVVEDTTVSLEQIREKFGDTCAMLVDGLTKLERIRFRSKEEQQNENYRKMFI 146 +I A LHDVVEDT V+ E + +FG AMLVDG+TKL +I+++S EEQQ EN+RKMF+ Sbjct: 70 TIAAGFLHDVVEDTHVTKEDLEREFGKEVAMLVDGVTKLGKIKYKSHEEQQAENHRKMFL 129 Query: 147 AMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIADRLGISAIKWEMED 206 AMAQDIRVI+IKLADRLHNMRTLK+ E QRRI+ ETLEIF P+A RLGIS IKWE+ED Sbjct: 130 AMAQDIRVILIKLADRLHNMRTLKHLPIEKQRRIANETLEIFAPLAHRLGISKIKWELED 189 Query: 207 IALRYLNPQQYYRIANLVHKKRAEREQFIDSVIGRIRAKLDEMGIEGDLSGRPKHIYSVY 266 ALRYLNPQQYYRI NL+ KKRAEREQ+++ VI +RA+L E+GI+ ++SGRPKHIYS+Y Sbjct: 190 TALRYLNPQQYYRIVNLMKKKRAEREQYLEEVIQEMRARLLEVGIQAEISGRPKHIYSIY 249 Query: 267 NKMNTKNKQFNEIYDLLAIRIIVDNIKDCYATLGIIHTLWKPMPGRFKDYIAMPKANMYQ 326 KM +NKQFNEIYDLLA+RIIV++IKDCYA LGIIHT WKPMPGRFKDYIAMPK NMYQ Sbjct: 250 RKMVLQNKQFNEIYDLLAVRIIVESIKDCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMYQ 309 Query: 327 SLHTTVVGPGGEPTEVQIRTWEMHRTAEFGIAAHWAYKEGSSNNVNP-ENRMPFFREILE 385 SLHTTVVGP GEP EVQIRT+EMH AEFGIAAHWAYKEG + N E ++ +FREI+E Sbjct: 310 SLHTTVVGPKGEPLEVQIRTFEMHHIAEFGIAAHWAYKEGKTIRPNTFEEKLSWFREIVE 369 Query: 386 LQHEAKDAEEFVESLKMDFFSDLVFVFTPKGEVVELPAGSVPLDFAFRIHTEVGNRTIGS 445 Q+E +AEEFVE+LKMD FSD+VFVFTPKG+V+ELPAGSVP+DFA+RIH+E+GN+TIG+ Sbjct: 370 WQNETNNAEEFVETLKMDLFSDMVFVFTPKGDVIELPAGSVPIDFAYRIHSEIGNKTIGA 429 Query: 446 KVNGRIVPLDHKLKTGDIVEILTSKNSYGPSRDWLKIAQSSHARSKIKQWFKKEKREENV 505 KVNG++VPLDH L+TGDIVEILTS +SYGPS+DWLKIAQ+SHA++KI+Q+FKK++REENV Sbjct: 430 KVNGKMVPLDHPLQTGDIVEILTSNHSYGPSQDWLKIAQTSHAKNKIRQFFKKQRREENV 489 Query: 506 EKGREAIERELKRQNVEVSDWLTEDKLSDAAKKFAFNDVEDMLSAVGFGGITAAQIASKL 565 EKG+E +E+E++ +V + LT + + A+KF F + EDM +AVG+ GITAAQ+A +L Sbjct: 490 EKGKELVEKEIRSMGFDVKEVLTAENMKRVAEKFNFANEEDMYAAVGYNGITAAQVAHRL 549 Query: 566 TEKLRKEQ--EEAAGHLELTTQMKEIKSSGEKRNQPTNGVRVKGIDNLLVRFARCCNPVP 623 TEK RK++ EE A L Q + + +KR+ GV V+G+DNLL+R +RCCNPVP Sbjct: 550 TEKWRKQRDLEEQAKRLSDMLQEAKTITPMKKRD---FGVCVEGVDNLLIRLSRCCNPVP 606 Query: 624 GDDIVGYVTRGRGVSVHREDCPNIPADGDGEESARVIEVEWE--GSMEANYSVDIEITGH 681 GD+I+G++T+GRGVSVHR DCPN+ + E R+I V+WE + + Y+VDIEITG+ Sbjct: 607 GDEIIGFITKGRGVSVHRADCPNVLVE---EAKERLIPVQWESGANCQREYTVDIEITGY 663 Query: 682 DRNGLLNEVLQAVSESKTNISAVTGRSD-KNKMAMIHMTILIRNTDHLQSXXXXXXXXXX 740 DR GLLNEVLQAV+E+KTNISAV+GR+D +NKMA IHMTI I N HLQ Sbjct: 664 DRRGLLNEVLQAVNETKTNISAVSGRTDHRNKMATIHMTIFIHNVSHLQKVVERIKQIPD 723 Query: 741 XYTVNRIM 748 Y+V RIM Sbjct: 724 IYSVRRIM 731 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,260,027,073 Number of extensions: 182955900 Number of successful extensions: 543802 Number of sequences better than 1.0e-05: 2438 Number of HSP's gapped: 534054 Number of HSP's successfully gapped: 2473 Length of query: 749 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 605 Effective length of database: 1,704,070,043 Effective search space: 1030962376015 Effective search space used: 1030962376015 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)