BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0265.0013.p
         (67 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFJ1.1 B3KFJ1_9BACI D-tyrosyl-tRNA(Tyr) deacylase EC=3.1.-.-         85   2e-15
C2YWZ0.1 C2YWZ0_BACCE D-tyrosyl-tRNA(Tyr) deacylase                    82   1e-14
Q4MS10.1 Q4MS10_BACCE D-tyrosyl-tRNA(Tyr) deacylase EC=3.1.-.-         82   2e-14
C2PKL4.1 C2PKL4_BACCE D-tyrosyl-tRNA(Tyr) deacylase                    82   2e-14
C2ZUS6.1 C2ZUS6_BACCE D-tyrosyl-tRNA(Tyr) deacylase                    81   3e-14

>B3KFJ1.1 B3KFJ1_9BACI D-tyrosyl-tRNA(Tyr) deacylase EC=3.1.-.-
          Length = 147

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query: 6   KAGGRTXXXXAAGPAEAERLYDYFNQELRNGGLQVETGVFGAMMDVSLTNWGPVTLLLDS 65
           + G R     AA P +A  LY+ FN+EL   GLQVETGVFGAMMDVSLTNWGPVTL++DS
Sbjct: 86  RKGKRPNFMAAAKPDQANALYESFNRELSAKGLQVETGVFGAMMDVSLTNWGPVTLIIDS 145

Query: 66  R 66
           R
Sbjct: 146 R 146


>C2YWZ0.1 C2YWZ0_BACCE D-tyrosyl-tRNA(Tyr) deacylase
          Length = 146

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%)

Query: 5   AKAGGRTXXXXAAGPAEAERLYDYFNQELRNGGLQVETGVFGAMMDVSLTNWGPVTLLLD 64
            + G R     AA P  AERLYD+FN+E+R  GL VETG FGAMMDVSL N GPVTL++D
Sbjct: 85  CRKGRRPNFMDAAKPDYAERLYDFFNEEVRKQGLHVETGTFGAMMDVSLINDGPVTLIVD 144

Query: 65  SR 66
           S+
Sbjct: 145 SK 146


>Q4MS10.1 Q4MS10_BACCE D-tyrosyl-tRNA(Tyr) deacylase EC=3.1.-.-
          Length = 146

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%)

Query: 5   AKAGGRTXXXXAAGPAEAERLYDYFNQELRNGGLQVETGVFGAMMDVSLTNWGPVTLLLD 64
            + G R     AA P  AERLYD+FN+E+R  GL VETG FGAMMDVSL N GPVTL++D
Sbjct: 85  CRKGRRPNFMDAAKPDYAERLYDFFNEEVRKQGLHVETGKFGAMMDVSLINDGPVTLIVD 144

Query: 65  SR 66
           S+
Sbjct: 145 SK 146


>C2PKL4.1 C2PKL4_BACCE D-tyrosyl-tRNA(Tyr) deacylase
          Length = 146

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%)

Query: 5   AKAGGRTXXXXAAGPAEAERLYDYFNQELRNGGLQVETGVFGAMMDVSLTNWGPVTLLLD 64
            + G R     AA P  AERLYD+FN+E+R  GL VETG FGAMMDVSL N GPVTL++D
Sbjct: 85  CRKGRRPNFMDAAKPDYAERLYDFFNEEVRKQGLHVETGKFGAMMDVSLINDGPVTLIVD 144

Query: 65  SR 66
           S+
Sbjct: 145 SK 146


>C2ZUS6.1 C2ZUS6_BACCE D-tyrosyl-tRNA(Tyr) deacylase
          Length = 146

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%)

Query: 5   AKAGGRTXXXXAAGPAEAERLYDYFNQELRNGGLQVETGVFGAMMDVSLTNWGPVTLLLD 64
            + G R     AA P  AERLYD+FN+E+R  GL VETG FGAMMDVSL N GPVTL++D
Sbjct: 85  CRKGRRPNFMGAAKPDYAERLYDFFNEEVRKQGLHVETGKFGAMMDVSLINDGPVTLIVD 144

Query: 65  SR 66
           S+
Sbjct: 145 SK 146


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 365,174,884
Number of extensions: 10448627
Number of successful extensions: 18529
Number of sequences better than 1.0e-05: 389
Number of HSP's gapped: 18646
Number of HSP's successfully gapped: 389
Length of query: 67
Length of database: 3,060,696,203
Length adjustment: 39
Effective length of query: 28
Effective length of database: 2,693,276,618
Effective search space: 75411745304
Effective search space used: 75411745304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)