BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0265.0008.p (559 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFJ7.1 B3KFJ7_9BACI Aspartyl-tRNA synthetase 978 0.0 B1DIY6.1 B1DIY6_9BACL Aspartyl-tRNA synthetase 913 0.0 C0ZAQ8.1 C0ZAQ8_BREBN Aspartyl-tRNA synthetase EC=6.1.1.12 817 0.0 Q2B1C6.1 Q2B1C6_9BACI Aspartyl-tRNA synthetase EC=6.1.1.12 755 0.0 B7GFR1.1 SYD_ANOFW Aspartyl-tRNA synthetase EC=6.1.1.12 747 0.0 >B3KFJ7.1 B3KFJ7_9BACI Aspartyl-tRNA synthetase Length = 592 Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/559 (83%), Positives = 519/559 (92%) Query: 1 VLFIDLRDRTGIVQVVFNPDYSGEALQIADKVRSEYVLSVTGKVVKRDEETINRNLPTGE 60 VLFIDLRDR+GI+Q+VFNPD+SGEAL +ADKVRSE+V++V+GKVVKRD ET N NLPTGE Sbjct: 34 VLFIDLRDRSGIMQIVFNPDFSGEALAVADKVRSEFVVAVSGKVVKRDPETFNPNLPTGE 93 Query: 61 IEVQITEIEVLNAAKTPPFFIEDGVEVDESLRMKYRYLDLRRPEMYKTMLLRSKAAKIFR 120 IEVQ+T IEVLNAAKTPPFFIEDGVEVDE LR+KYRYLDLRRPEM KT++LRSKA+K+FR Sbjct: 94 IEVQVTSIEVLNAAKTPPFFIEDGVEVDEQLRLKYRYLDLRRPEMQKTLMLRSKASKVFR 153 Query: 121 DFLDSEGFIEIETPILTKSSPEGARDYLVPSRVHEGEFFGLPQSPQIYKQLLMVGGIERY 180 DFLD EGF+++ETPILTKSSPEGARDYLVPSRVH GEFF LPQSPQIYKQLLMV G+ERY Sbjct: 154 DFLDDEGFVDVETPILTKSSPEGARDYLVPSRVHAGEFFALPQSPQIYKQLLMVSGLERY 213 Query: 181 YQMARCFRDEDLRADRQPEFTQFDIETSFMPQDELLSMMETLMQRLLKETVGVDVAVPFQ 240 YQ+ARCFRDEDLRADRQPEFTQ DIETSFM +++LL+MME LM +L KET+GV++A PFQ Sbjct: 214 YQIARCFRDEDLRADRQPEFTQVDIETSFMDREDLLNMMEQLMVKLFKETIGVELATPFQ 273 Query: 241 RLTYAEAMGKYGSDKPDLRFGLELVEMNDIVAASGVKVFASVIEKGGEVKCLNAKGCGTW 300 R++YA+AMGKYGSDKPDLRFG+EL+EMNDIVA+SGVKVF+SVIEKGGEVKCLNAKGCGTW Sbjct: 274 RISYADAMGKYGSDKPDLRFGMELIEMNDIVASSGVKVFSSVIEKGGEVKCLNAKGCGTW 333 Query: 301 TRKEIDDLGPYAARYGAKGLAWIQVKDGEFKGPIVKFFTEEEIAAVKERTGAEEGDLLLF 360 TRKEIDDLGPYAARYGAKGLAWIQVK+GEFKGPIVKFF+E+EI AV+ERTGAE+GDLLLF Sbjct: 334 TRKEIDDLGPYAARYGAKGLAWIQVKEGEFKGPIVKFFSEQEIEAVRERTGAEDGDLLLF 393 Query: 361 SADTKKVVADVLGALRLKIGRQLGLIDDSVFKFAWVTEFPLLGYDEDQKRYVAEHHPFTR 420 SAD KKVVADVLGALRLKIGRQLGLI+D+ +KFAWV +FPL YDE+ KRYVAEHHPFTR Sbjct: 394 SADNKKVVADVLGALRLKIGRQLGLINDNEYKFAWVLDFPLFSYDEEAKRYVAEHHPFTR 453 Query: 421 PMDEDLHLFDTDPGAIRAKAYDIVLNGYEVGGGSQRIYKREIQEKMFDALGFTTEVAYEK 480 P DEDL L DTDP A+RA+AYDIVLNGYEVGGGS RIYKREIQEKMF ALG + EVA++K Sbjct: 454 PKDEDLGLMDTDPLAVRAEAYDIVLNGYEVGGGSMRIYKREIQEKMFAALGMSPEVAHDK 513 Query: 481 FGYLLDAFEYGTPPHGGIAFGFDRLIMLLAGRTNLREAIAFPKTASATDLLMDAPAPVDA 540 FGYL+DAFEYGTPPHGGIAFG DRL+MLLAGRTNLRE IAFPKTASATDLLMDAP+ VD Sbjct: 514 FGYLMDAFEYGTPPHGGIAFGLDRLVMLLAGRTNLRETIAFPKTASATDLLMDAPSQVDG 573 Query: 541 IQLEQLHIKLAPKPDKEKK 559 QLEQLHIKLA KP EKK Sbjct: 574 GQLEQLHIKLAKKPGDEKK 592 >B1DIY6.1 B1DIY6_9BACL Aspartyl-tRNA synthetase Length = 600 Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/557 (78%), Positives = 492/557 (88%), Gaps = 2/557 (0%) Query: 1 VLFIDLRDRTGIVQVVFNPDYSGEALQIADKVRSEYVLSVTGKVVKRDEETINRNLPTGE 60 VLFIDLRDRTGIVQ VFNPD+SGEAL IAD+ R+E+VL+V G VV+RD ET+N+NL TGE Sbjct: 35 VLFIDLRDRTGIVQTVFNPDFSGEALAIADRARNEFVLAVKGTVVERDAETVNKNLATGE 94 Query: 61 IEVQITEIEVLNAAKTPPFFIEDGVEVDESLRMKYRYLDLRRPEMYKTMLLRSKAAKIFR 120 IE+++TEIEV+NAAKTPPF IEDGVEVDESLR+KYRYLDLRRPEM+KT+LLRSKAAK+FR Sbjct: 95 IEIRVTEIEVINAAKTPPFPIEDGVEVDESLRLKYRYLDLRRPEMHKTLLLRSKAAKVFR 154 Query: 121 DFLDSEGFIEIETPILTKSSPEGARDYLVPSRVHEGEFFGLPQSPQIYKQLLMVGGIERY 180 DFLD EGFI++ETPILTKS+PEGARDYLVPSRVHEGEFF LPQSPQI+KQLLMVGGIERY Sbjct: 155 DFLDGEGFIDVETPILTKSTPEGARDYLVPSRVHEGEFFALPQSPQIFKQLLMVGGIERY 214 Query: 181 YQMARCFRDEDLRADRQPEFTQFDIETSFMPQDELLSMMETLMQRLLKETVGVDVAVPFQ 240 YQ+ARCFRDEDLRADRQPEFTQ DIETSF+ QD+LL MME L+ RL +ET+GV+V +P Q Sbjct: 215 YQIARCFRDEDLRADRQPEFTQVDIETSFLTQDQLLGMMEQLIARLFRETIGVEVELPIQ 274 Query: 241 RLTYAEAMGKYGSDKPDLRFGLELVEMNDIVAASGVKVFASVIEKGGEVKCLNAKGCGTW 300 R+TYA+AM KYGSDKPDLRFG+E+ ++ DIVA S VKVFASV GG VK NAKGCG W Sbjct: 275 RITYADAMNKYGSDKPDLRFGMEIEDITDIVATSDVKVFASVAASGGVVKAFNAKGCGHW 334 Query: 301 TRKEIDDLGPYAARYGAKGLAWIQVKDGEFKGPIVKFFTEEEIAAVKERTGAEEGDLLLF 360 +RKE+DDL P+AARYG KGLAWI +KDGE+KGPIVKF EEIAA+ ER E+GDLL F Sbjct: 335 SRKELDDLQPFAARYGGKGLAWITIKDGEWKGPIVKFLKPEEIAALTERLNVEDGDLLTF 394 Query: 361 SADTKKVVADVLGALRLKIGRQLGLIDDSVFKFAWVTEFPLLGYDEDQKRYVAEHHPFTR 420 SAD KVVADVLG LRLK+GR+LGLIDDS FKF WV +FP+L +DE+ KRYVA HHPFTR Sbjct: 395 SADKAKVVADVLGNLRLKVGRELGLIDDSKFKFVWVVDFPMLEWDEEAKRYVAVHHPFTR 454 Query: 421 PMDEDLHLFDTDPGAIRAKAYDIVLNGYEVGGGSQRIYKREIQEKMFDALGFTTEVAYEK 480 P DEDLHLFDTDPG IRA+AYDIVLNGYEVGGGS RIYKR+IQEKMF ALGF E A+EK Sbjct: 455 PKDEDLHLFDTDPGQIRAQAYDIVLNGYEVGGGSMRIYKRDIQEKMFGALGFNMEEAHEK 514 Query: 481 FGYLLDAFEYGTPPHGGIAFGFDRLIMLLAGRTNLREAIAFPKTASATDLLMDAPAPVDA 540 FG+LLDAF+YGTPPHGGIAFGFDRL+MLL GRTNLRE IAFPKTASATDLL DAP+PV+ Sbjct: 515 FGFLLDAFDYGTPPHGGIAFGFDRLVMLLTGRTNLRETIAFPKTASATDLLCDAPSPVEL 574 Query: 541 IQLEQLHIK--LAPKPD 555 QLEQLHI+ L PKP+ Sbjct: 575 SQLEQLHIRTVLKPKPE 591 >C0ZAQ8.1 C0ZAQ8_BREBN Aspartyl-tRNA synthetase EC=6.1.1.12 Length = 596 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/548 (70%), Positives = 457/548 (83%) Query: 1 VLFIDLRDRTGIVQVVFNPDYSGEALQIADKVRSEYVLSVTGKVVKRDEETINRNLPTGE 60 V+FID RDRTGIVQ+VFNP+Y+ EA + ADKVRSEYVL V GKVV R E +N L TGE Sbjct: 37 VIFIDFRDRTGIVQIVFNPEYNKEAWEAADKVRSEYVLVVKGKVVNRAPEAVNPKLKTGE 96 Query: 61 IEVQITEIEVLNAAKTPPFFIEDGVEVDESLRMKYRYLDLRRPEMYKTMLLRSKAAKIFR 120 +EV I+EIE+LN AKTPPF IED ++VDE +R+KYRYLDLRRPEM +++LLRSKAAK FR Sbjct: 97 VEVHISEIEILNDAKTPPFLIEDEIDVDEQVRLKYRYLDLRRPEMQRSLLLRSKAAKAFR 156 Query: 121 DFLDSEGFIEIETPILTKSSPEGARDYLVPSRVHEGEFFGLPQSPQIYKQLLMVGGIERY 180 D+LD F+EIETPIL KS+PEGARDYLVPSRVH GEF+ LPQSPQ++KQLLMV G+ERY Sbjct: 157 DYLDENNFMEIETPILQKSTPEGARDYLVPSRVHPGEFYALPQSPQLFKQLLMVSGLERY 216 Query: 181 YQMARCFRDEDLRADRQPEFTQFDIETSFMPQDELLSMMETLMQRLLKETVGVDVAVPFQ 240 YQ+ARCFRDEDLRADRQPEFTQ DIETSF+ +E+L MME ++ + K+TVGVDV PF Sbjct: 217 YQIARCFRDEDLRADRQPEFTQVDIETSFLSMEEILPMMEKMVAHVFKQTVGVDVPTPFP 276 Query: 241 RLTYAEAMGKYGSDKPDLRFGLELVEMNDIVAASGVKVFASVIEKGGEVKCLNAKGCGTW 300 RLTYA+AM +YGSDKPD+RFG+EL +++D+VA S KVFA+ + GG+VK +NAKGCG + Sbjct: 277 RLTYADAMARYGSDKPDVRFGMELTDVSDLVATSDFKVFAAAVAGGGQVKAINAKGCGHY 336 Query: 301 TRKEIDDLGPYAARYGAKGLAWIQVKDGEFKGPIVKFFTEEEIAAVKERTGAEEGDLLLF 360 +RKE DDLG +A+RYGAKGLAWI KDGE KGPI KFF EEE+ +K R EEGDLLLF Sbjct: 337 SRKEADDLGKFASRYGAKGLAWIGFKDGEVKGPIAKFFKEEELNEMKARLAVEEGDLLLF 396 Query: 361 SADTKKVVADVLGALRLKIGRQLGLIDDSVFKFAWVTEFPLLGYDEDQKRYVAEHHPFTR 420 AD KVVAD LGALR K+G +LGLID S F F WV +FPL+ +DED KRYVA HHPFTR Sbjct: 397 VADKPKVVADALGALRSKLGAELGLIDQSQFAFLWVVDFPLVEWDEDAKRYVALHHPFTR 456 Query: 421 PMDEDLHLFDTDPGAIRAKAYDIVLNGYEVGGGSQRIYKREIQEKMFDALGFTTEVAYEK 480 P DEDLHLFDTDPG +RA+AYD+VLNGYE+GGGS RI+KRE+QEKMF LGFT E A ++ Sbjct: 457 PKDEDLHLFDTDPGQMRAQAYDMVLNGYELGGGSMRIFKREVQEKMFTTLGFTPEEARKQ 516 Query: 481 FGYLLDAFEYGTPPHGGIAFGFDRLIMLLAGRTNLREAIAFPKTASATDLLMDAPAPVDA 540 FG+L+DAFEYGTPPHGGIA G DRLIMLLAGRTNLRE IAFPKTASA+DL+++AP VD Sbjct: 517 FGFLMDAFEYGTPPHGGIALGLDRLIMLLAGRTNLREVIAFPKTASASDLMVNAPDVVDG 576 Query: 541 IQLEQLHI 548 QL++L I Sbjct: 577 KQLKELSI 584 >Q2B1C6.1 Q2B1C6_9BACI Aspartyl-tRNA synthetase EC=6.1.1.12 Length = 591 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/554 (64%), Positives = 440/554 (79%), Gaps = 1/554 (0%) Query: 1 VLFIDLRDRTGIVQVVFNPDYSGEALQIADKVRSEYVLSVTGKVVKRDEETINRNLPTGE 60 ++FIDLRDRTG+VQVVFNP+ S EAL A+K+R+EYVLSV GKVV R+ TIN NLPTG+ Sbjct: 35 LIFIDLRDRTGLVQVVFNPETSPEALAAAEKIRNEYVLSVEGKVVAREPGTINENLPTGK 94 Query: 61 IEVQITEIEVLNAAKTPPFFIEDGVEVDESLRMKYRYLDLRRPEMYKTMLLRSKAAKIFR 120 IEV + ++N AKTPPF I D +V E +R+KYRYLD RRP M++T +R + K R Sbjct: 95 IEVSAEAVTIINEAKTPPFVIADQTDVSEDVRLKYRYLDFRRPVMFETFKMRHQVTKSIR 154 Query: 121 DFLDSEGFIEIETPILTKSSPEGARDYLVPSRVHEGEFFGLPQSPQIYKQLLMVGGIERY 180 D+LDSEGF++IETPILTKS+PEGARDYLVPSRVH GEF+ LPQSPQI+KQLLMVGGIERY Sbjct: 155 DYLDSEGFLDIETPILTKSTPEGARDYLVPSRVHPGEFYALPQSPQIFKQLLMVGGIERY 214 Query: 181 YQMARCFRDEDLRADRQPEFTQFDIETSFMPQDELLSMMETLMQRLLKETVGVDVAVPFQ 240 YQ+ARCFRDEDLRADRQPEFTQ DIETSFM Q++++SM E +M +++KE G+D+ +P Q Sbjct: 215 YQIARCFRDEDLRADRQPEFTQIDIETSFMSQEDIISMTEQMMTKVMKEVKGIDITLPIQ 274 Query: 241 RLTYAEAMGKYGSDKPDLRFGLELVEMNDIVAASGVKVFASVIEKGGEVKCLNAKGCGT- 299 R+TY EAM +YGSDKPD RF +ELV +++ ++ SG KVFA I GGEVK +N K + Sbjct: 275 RMTYQEAMDRYGSDKPDTRFAMELVNLSETLSNSGFKVFAGAISSGGEVKAINVKDAASK 334 Query: 300 WTRKEIDDLGPYAARYGAKGLAWIQVKDGEFKGPIVKFFTEEEIAAVKERTGAEEGDLLL 359 ++RK+ID L +A+RYGAKGLAW++ ++ KGPI KF EEE AA+KE G E GDLLL Sbjct: 335 YSRKDIDALTEFASRYGAKGLAWLKAEEEGLKGPIAKFVAEEEQAAIKELLGVETGDLLL 394 Query: 360 FSADTKKVVADVLGALRLKIGRQLGLIDDSVFKFAWVTEFPLLGYDEDQKRYVAEHHPFT 419 F AD K VVAD LGALRLK+G++LGLID S+F F WVTE+PLL +DE++ RY A HHPFT Sbjct: 395 FVADKKSVVADALGALRLKLGKELGLIDQSLFNFLWVTEWPLLEFDEEEGRYYAAHHPFT 454 Query: 420 RPMDEDLHLFDTDPGAIRAKAYDIVLNGYEVGGGSQRIYKREIQEKMFDALGFTTEVAYE 479 P EDL DTDP ++A+AYD+VLNGYE+GGGS RI++REIQEKMF LGF+ E A E Sbjct: 455 MPNREDLEYLDTDPSKVKAQAYDLVLNGYELGGGSLRIFEREIQEKMFSVLGFSKEEARE 514 Query: 480 KFGYLLDAFEYGTPPHGGIAFGFDRLIMLLAGRTNLREAIAFPKTASATDLLMDAPAPVD 539 +FG+LL+AFEYGTPPHGGIA G DRL+MLLAG +NLR+ IAFPKTASA+ LL +AP V Sbjct: 515 QFGFLLEAFEYGTPPHGGIALGLDRLVMLLAGSSNLRDTIAFPKTASASCLLTNAPGEVS 574 Query: 540 AIQLEQLHIKLAPK 553 QL LH++L K Sbjct: 575 EAQLNDLHLQLNLK 588 >B7GFR1.1 SYD_ANOFW Aspartyl-tRNA synthetase EC=6.1.1.12 Length = 592 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/551 (63%), Positives = 441/551 (80%), Gaps = 1/551 (0%) Query: 1 VLFIDLRDRTGIVQVVFNPDYSGEALQIADKVRSEYVLSVTGKVVKRDEETINRNLPTGE 60 ++FIDLRDRTGIVQ+VF+PD S EALQ+A+ +RSEYVL V G VV+R+E +N NLPTG Sbjct: 35 LIFIDLRDRTGIVQIVFSPDVSKEALQVAETIRSEYVLDVEGTVVQREEGQVNPNLPTGT 94 Query: 61 IEVQITEIEVLNAAKTPPFFIEDGVEVDESLRMKYRYLDLRRPEMYKTMLLRSKAAKIFR 120 IEV + +L+ AKTPPF I D +V E +R+KYRYLDLRRP M++T +R + K R Sbjct: 95 IEVHAMHVTILSEAKTPPFLISDKTDVSEDVRLKYRYLDLRRPVMFQTFKMRHQVTKAIR 154 Query: 121 DFLDSEGFIEIETPILTKSSPEGARDYLVPSRVHEGEFFGLPQSPQIYKQLLMVGGIERY 180 DFLD EGF+E+ETPILTKS+PEGARDYLVPSRVH GEF+ LPQSPQI+KQLLMV G ERY Sbjct: 155 DFLDEEGFLEVETPILTKSTPEGARDYLVPSRVHPGEFYALPQSPQIFKQLLMVAGFERY 214 Query: 181 YQMARCFRDEDLRADRQPEFTQFDIETSFMPQDELLSMMETLMQRLLKETVGVDVAVPFQ 240 YQ+ARCFRDEDLRADRQPEFTQ DIETSFM QD++L+M+E +M R++K GVD+++PF Sbjct: 215 YQIARCFRDEDLRADRQPEFTQVDIETSFMSQDDILAMIERMMARVMKVAKGVDISIPFP 274 Query: 241 RLTYAEAMGKYGSDKPDLRFGLELVEMNDIVAASGVKVFASVIEKGGEVKCLNAKGCG-T 299 R++Y EA+ +YGSDKPD RFGLELV++++ V G KVFAS ++ GG+VK +N KG Sbjct: 275 RMSYDEAIARYGSDKPDTRFGLELVDLSEQVKDCGFKVFASAVQNGGQVKAINVKGAADK 334 Query: 300 WTRKEIDDLGPYAARYGAKGLAWIQVKDGEFKGPIVKFFTEEEIAAVKERTGAEEGDLLL 359 ++RK+ID L Y ARYGAKGLAW++V+ KGPI KFFTE+E + + AE GDLLL Sbjct: 335 YSRKDIDALTEYVARYGAKGLAWLKVEADGLKGPIAKFFTEDEQKQMMQTLEAETGDLLL 394 Query: 360 FSADTKKVVADVLGALRLKIGRQLGLIDDSVFKFAWVTEFPLLGYDEDQKRYVAEHHPFT 419 F AD K VVAD LGALRLK+G+ L LID+S F F W+T++PL YDE++ RY A HHPFT Sbjct: 395 FVADKKSVVADALGALRLKLGKDLQLIDESAFHFLWITDWPLFEYDEEEGRYYAAHHPFT 454 Query: 420 RPMDEDLHLFDTDPGAIRAKAYDIVLNGYEVGGGSQRIYKREIQEKMFDALGFTTEVAYE 479 P+ ED+ F+TDP ++RA+AYD+VLNGYE+GGGS RI++R+IQEKMF LGFT E A E Sbjct: 455 MPVREDVPKFETDPASVRAQAYDLVLNGYELGGGSLRIFERDIQEKMFKTLGFTEEQARE 514 Query: 480 KFGYLLDAFEYGTPPHGGIAFGFDRLIMLLAGRTNLREAIAFPKTASATDLLMDAPAPVD 539 +FG+LL+AFEYGTPPHGGIA G DRL+MLLAGR+NLR+ IAFPKTASA+ LL +AP+ V Sbjct: 515 QFGFLLEAFEYGTPPHGGIALGLDRLVMLLAGRSNLRDTIAFPKTASASCLLTEAPSAVS 574 Query: 540 AIQLEQLHIKL 550 QLE+LH+++ Sbjct: 575 EEQLEELHLRI 585 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.140 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,423,947,662 Number of extensions: 151919358 Number of successful extensions: 347398 Number of sequences better than 1.0e-05: 4445 Number of HSP's gapped: 336989 Number of HSP's successfully gapped: 4808 Length of query: 559 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 418 Effective length of database: 1,732,333,088 Effective search space: 724115230784 Effective search space used: 724115230784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)