BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0265.0007.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFJ8.1 B3KFJ8_9BACI UBA/THIF-type NAD/FAD binding protein 454 e-126 B1DIY5.1 B1DIY5_9BACL UBA/THIF-type NAD/FAD binding protein 412 e-113 Q2B1C5.1 Q2B1C5_9BACI Putative uncharacterized protein 360 6e-98 Q5KWT0.1 Q5KWT0_GEOKA Hypothetical conserved protein 342 2e-92 A4IR93.1 A4IR93_GEOTN Molybdopterin biosynthesis MoeB-like protein 341 3e-92 >B3KFJ8.1 B3KFJ8_9BACI UBA/THIF-type NAD/FAD binding protein Length = 251 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/250 (86%), Positives = 238/250 (95%) Query: 1 MLHQFSRTELAIGPEGLEIMKNSTVAVLGIGGVGAMAVEALARTGIGRIILIDKDSVDIT 60 MLHQFSRTELAIGPEGLE+MKNSTVAVLGIGGVG++AVEALARTG+GRIILIDKD VDIT Sbjct: 1 MLHQFSRTELAIGPEGLEVMKNSTVAVLGIGGVGSIAVEALARTGVGRIILIDKDVVDIT 60 Query: 61 NINRQIHALTTTIGQNKTDLMVERIKLINPECEAIALNMFYTEETYEELFKYKLDYVIDA 120 NINRQIHALTTT+GQ K DLMV+R+KLINPECEAIALNMFYTEETYEELFKY+LDYVIDA Sbjct: 61 NINRQIHALTTTVGQKKADLMVDRVKLINPECEAIALNMFYTEETYEELFKYELDYVIDA 120 Query: 121 SDTIIYKVHIIKECLARGIPMISSMGAANKMDPTRFQVADISKTSMDPIARVIRQKLRKE 180 SDTIIYKVH+IKECL RGIP+ISSMGAANKMDPT+FQVADISKTSMDPIAR++R KLRK+ Sbjct: 121 SDTIIYKVHLIKECLRRGIPIISSMGAANKMDPTKFQVADISKTSMDPIARIVRTKLRKD 180 Query: 181 GIKKGVKVVFSTEEPVKPREDVTEQIVPANAPDRRKAKQPPASNSFVPPVVGLIMVSVAV 240 GIKKGVKVVFS EEP+KPR+DVTE+IVP NAP+ RKAKQPPASN+FVPPV GLIMVSV V Sbjct: 181 GIKKGVKVVFSLEEPMKPRQDVTEKIVPENAPEIRKAKQPPASNAFVPPVAGLIMVSVTV 240 Query: 241 RDLLEAGRIS 250 ++LLE G +S Sbjct: 241 KELLEKGGVS 250 >B1DIY5.1 B1DIY5_9BACL UBA/THIF-type NAD/FAD binding protein Length = 251 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/244 (81%), Positives = 220/244 (90%) Query: 1 MLHQFSRTELAIGPEGLEIMKNSTVAVLGIGGVGAMAVEALARTGIGRIILIDKDSVDIT 60 MLHQFSRTELAIGPEGL +MK STVAVLGIGGVG++A EALARTG+GRIILIDKD VDIT Sbjct: 1 MLHQFSRTELAIGPEGLGVMKGSTVAVLGIGGVGSIAAEALARTGVGRIILIDKDVVDIT 60 Query: 61 NINRQIHALTTTIGQNKTDLMVERIKLINPECEAIALNMFYTEETYEELFKYKLDYVIDA 120 N+NRQIHALTTT+GQ K DLM +RIKLINPEC+ I+L MFYTEETYE+LF Y LDYV+DA Sbjct: 61 NVNRQIHALTTTVGQPKADLMRDRIKLINPECDVISLRMFYTEETYEQLFAYDLDYVVDA 120 Query: 121 SDTIIYKVHIIKECLARGIPMISSMGAANKMDPTRFQVADISKTSMDPIARVIRQKLRKE 180 SDTI YKVH+IKECL R IP+ISSMGAANKMDPTRF+VADISKT DPIARV+R KLRK+ Sbjct: 121 SDTISYKVHLIKECLERKIPIISSMGAANKMDPTRFKVADISKTHTDPIARVVRTKLRKD 180 Query: 181 GIKKGVKVVFSTEEPVKPREDVTEQIVPANAPDRRKAKQPPASNSFVPPVVGLIMVSVAV 240 GIKKGVKVVFS E P KPREDVT++IVP NAP+ RKAKQPPASN+FVPPV GLIMVSV V Sbjct: 181 GIKKGVKVVFSDELPKKPREDVTQRIVPENAPEIRKAKQPPASNAFVPPVAGLIMVSVVV 240 Query: 241 RDLL 244 +DLL Sbjct: 241 QDLL 244 >Q2B1C5.1 Q2B1C5_9BACI Putative uncharacterized protein Length = 254 Score = 360 bits (924), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 175/245 (71%), Positives = 204/245 (83%), Gaps = 1/245 (0%) Query: 1 MLHQFSRTELAIGPEGLEIMKNSTVAVLGIGGVGAMAVEALARTGIGRIILIDKDSVDIT 60 MLHQFSR ELAIG EGLE MKNSTVAVLGIGGVG+ A EALAR+G+G++ILIDKD VDIT Sbjct: 1 MLHQFSRNELAIGQEGLETMKNSTVAVLGIGGVGSFAAEALARSGVGKLILIDKDDVDIT 60 Query: 61 NINRQIHALTTTIGQNKTDLMVERIKLINPECEAIALNMFYTEETYEELFKYKLDYVIDA 120 N+NRQI AL +T+G+ K DLM ERIK INP+CE IAL MFYTEETYEE+F Y LDYV+DA Sbjct: 61 NVNRQIIALVSTVGKPKADLMKERIKDINPDCEVIALKMFYTEETYEEIFAYGLDYVVDA 120 Query: 121 SDTIIYKVHIIKECLARGIPMISSMGAANKMDPTRFQVADISKTSMDPIARVIRQKLRKE 180 SDTI YK+H+IKECL R IPMISSMGAANKMDPTRFQ+ADI KT DPIA+VIR +LRKE Sbjct: 121 SDTISYKIHLIKECLKRDIPMISSMGAANKMDPTRFQIADIFKTHTDPIAKVIRTRLRKE 180 Query: 181 GIKKGVKVVFSTEEPVKPREDVTEQIVPANAPDRRKAKQPPASNSFVPPVVGLIMVSVAV 240 GI+KG+ VVFS E P+ RE+V +++ +A RKAK PP+SN+FVP V GL+M S V Sbjct: 181 GIRKGIPVVFSDESPIVIREEVRKEVGKDDAK-IRKAKMPPSSNAFVPSVAGLVMASYVV 239 Query: 241 RDLLE 245 RDLL+ Sbjct: 240 RDLLK 244 >Q5KWT0.1 Q5KWT0_GEOKA Hypothetical conserved protein Length = 254 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 176/246 (71%), Positives = 207/246 (84%), Gaps = 1/246 (0%) Query: 1 MLHQFSRTELAIGPEGLEIMKNSTVAVLGIGGVGAMAVEALARTGIGRIILIDKDSVDIT 60 MLHQFSR ELAIGPEGLE +KN+TVAVLG+GGVG+ AVEALAR+GIGR++L+D+D+VDIT Sbjct: 1 MLHQFSRNELAIGPEGLERLKNATVAVLGVGGVGSFAVEALARSGIGRLVLVDRDNVDIT 60 Query: 61 NINRQIHALTTTIGQNKTDLMVERIKLINPECEAIALNMFYTEETYEELFKYKLDYVIDA 120 NINRQIHAL +TIG+ K +LM ERI INP CE IAL MFYTEETYE+ F Y LD+VIDA Sbjct: 61 NINRQIHALLSTIGRPKVELMKERIADINPACEVIALQMFYTEETYEQFFAYDLDFVIDA 120 Query: 121 SDTIIYKVHIIKECLARGIPMISSMGAANKMDPTRFQVADISKTSMDPIARVIRQKLRKE 180 SDTI+YKVH++K+CL RGIP+ISSMGAANKMDPTRF++ADISKT DPIA+VIR KLRKE Sbjct: 121 SDTIVYKVHLMKQCLKRGIPIISSMGAANKMDPTRFRIADISKTHTDPIAKVIRAKLRKE 180 Query: 181 GIKKGVKVVFSTEEPVKPREDVTEQIVPANAPDRRKAKQPPASNSFVPPVVGLIMVSVAV 240 GI +G+ VVFS E+PVK REDV Q+V +A RKAK PP+SN+FVP V GLIM S + Sbjct: 181 GIHRGIPVVFSDEKPVKIREDV-RQVVGNDASPIRKAKMPPSSNAFVPSVAGLIMASYVI 239 Query: 241 RDLLEA 246 LLE Sbjct: 240 HRLLEG 245 >A4IR93.1 A4IR93_GEOTN Molybdopterin biosynthesis MoeB-like protein Length = 258 Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 174/245 (71%), Positives = 209/245 (85%), Gaps = 1/245 (0%) Query: 1 MLHQFSRTELAIGPEGLEIMKNSTVAVLGIGGVGAMAVEALARTGIGRIILIDKDSVDIT 60 MLHQFSR ELAIGPEGLE +KN+TVAVLG+GGVG+ AVEALAR+G+GR++L+D+D+VDIT Sbjct: 6 MLHQFSRNELAIGPEGLEKLKNATVAVLGVGGVGSFAVEALARSGVGRLVLVDRDNVDIT 65 Query: 61 NINRQIHALTTTIGQNKTDLMVERIKLINPECEAIALNMFYTEETYEELFKYKLDYVIDA 120 NINRQIHAL +TIG+ K +LM ERI INP CE IAL MFYTEETYE+ F Y LD+VIDA Sbjct: 66 NINRQIHALLSTIGRPKVELMKERIADINPACEMIALQMFYTEETYEQFFAYNLDFVIDA 125 Query: 121 SDTIIYKVHIIKECLARGIPMISSMGAANKMDPTRFQVADISKTSMDPIARVIRQKLRKE 180 SDTI+YKVH++K+CL RGIP+ISSMGAANKMDPTRF++ADISKT DPIA+VIR KLRKE Sbjct: 126 SDTIMYKVHLMKQCLERGIPIISSMGAANKMDPTRFRIADISKTHTDPIAKVIRAKLRKE 185 Query: 181 GIKKGVKVVFSTEEPVKPREDVTEQIVPANAPDRRKAKQPPASNSFVPPVVGLIMVSVAV 240 GI++G+ VVFS E+PVK REDV Q+V +A RKAK PP+SN+FVP V GLIM S + Sbjct: 186 GIRRGIPVVFSDEKPVKIREDV-RQVVGNDASPIRKAKMPPSSNAFVPSVAGLIMASYVI 244 Query: 241 RDLLE 245 +LL+ Sbjct: 245 NELLK 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,310,443,810 Number of extensions: 50132959 Number of successful extensions: 210879 Number of sequences better than 1.0e-05: 3142 Number of HSP's gapped: 209651 Number of HSP's successfully gapped: 3144 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)