BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0265.0005.p
         (78 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2B9M0.1 Q2B9M0_9BACI Putative uncharacterized protein                107   5e-22
Q9KB98.1 Q9KB98_BACHD BH2030 protein                                  100   5e-20
C3BPI8.1 C3BPI8_9BACI Xanthine/uracil permease                         97   5e-19
C3B7H3.1 C3B7H3_BACMY Xanthine/uracil permease                         97   5e-19
C3AQ49.1 C3AQ49_BACMY Xanthine/uracil permease                         97   5e-19

>Q2B9M0.1 Q2B9M0_9BACI Putative uncharacterized protein
          Length = 431

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 61/74 (82%)

Query: 1   MVQNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPAL 60
           M+QN+R +D+ D++E FPAF I+ MIPFTYSI DG+A GFI YP++K+A+G+ KEV  AL
Sbjct: 355 MLQNIRNLDMKDMSESFPAFFIIAMIPFTYSIADGIAVGFILYPILKIAIGRAKEVSVAL 414

Query: 61  YGIAGLFIANFVLH 74
           Y IAGLF+ANFV H
Sbjct: 415 YVIAGLFLANFVFH 428


>Q9KB98.1 Q9KB98_BACHD BH2030 protein
          Length = 432

 Score =  100 bits (248), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 58/76 (76%)

Query: 1   MVQNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPAL 60
           MVQ V+++D  D +E FPAFL++VMIPF+YSI DG+AFGFI YP+VK A+GK KEVP  L
Sbjct: 357 MVQQVKQIDFQDFSEGFPAFLVIVMIPFSYSIADGIAFGFIAYPLVKFALGKAKEVPIPL 416

Query: 61  YGIAGLFIANFVLHAF 76
           Y IA LF   FV H +
Sbjct: 417 YVIATLFFLTFVAHVY 432


>C3BPI8.1 C3BPI8_9BACI Xanthine/uracil permease
          Length = 429

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 3   QNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPALYG 62
            N++ + L+D +E FPAFLI+VMIP TYSI DG+AFGFI YP++K+A+GK KEV P++Y 
Sbjct: 355 TNIQAIPLNDFSEGFPAFLIIVMIPLTYSIADGIAFGFIAYPILKIALGKHKEVAPSMYI 414

Query: 63  IAGLFIANFVLHA 75
           I  LF+A FVLHA
Sbjct: 415 ITCLFLAMFVLHA 427


>C3B7H3.1 C3B7H3_BACMY Xanthine/uracil permease
          Length = 429

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 3   QNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPALYG 62
            N++ + L+D +E FPAFLI+VMIP TYSI DG+AFGFI YP++K+A+GK KEV P++Y 
Sbjct: 355 TNIQAIPLNDFSEGFPAFLIIVMIPLTYSIADGIAFGFIAYPILKIALGKHKEVAPSMYI 414

Query: 63  IAGLFIANFVLHA 75
           I  LF+A FVLHA
Sbjct: 415 ITCLFLAMFVLHA 427


>C3AQ49.1 C3AQ49_BACMY Xanthine/uracil permease
          Length = 429

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 3   QNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPALYG 62
            N++ + L+D +E FPAFLI+VMIP TYSI DG+AFGFI YP++K+A+GK KEV P++Y 
Sbjct: 355 TNIQAIPLNDFSEGFPAFLIIVMIPLTYSIADGIAFGFIAYPILKIALGKHKEVAPSMYI 414

Query: 63  IAGLFIANFVLHA 75
           I  LF+A FVLHA
Sbjct: 415 ITCLFLAMFVLHA 427


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.332    0.147    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 429,706,769
Number of extensions: 14106925
Number of successful extensions: 42469
Number of sequences better than 1.0e-05: 1437
Number of HSP's gapped: 42470
Number of HSP's successfully gapped: 1437
Length of query: 78
Length of database: 3,060,696,203
Length adjustment: 49
Effective length of query: 29
Effective length of database: 2,599,066,468
Effective search space: 75372927572
Effective search space used: 75372927572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 125 (52.8 bits)