BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0064.p
         (71 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG68.1 B3KG68_9BACI Putative uncharacterized protein                119   1e-25
C0ZGD3.1 C0ZGD3_BREBN Conserved hypothetical membrane protein          73   7e-12
A6CRD5.1 A6CRD5_9BACI Putative uncharacterized protein                 68   3e-10
Q4MNS9.1 Q4MNS9_BACCE Putative uncharacterized protein                 60   5e-08
B7IXN8.1 B7IXN8_BACC2 Putative uncharacterized protein                 60   5e-08

>B3KG68.1 B3KG68_9BACI Putative uncharacterized protein
          Length = 78

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 65/71 (91%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGFFTL IGLMAFAGD  EMALLFFLQTAFFVILGY+KFTE+TYILLFW YMI+TFTGFS
Sbjct: 8  LGFFTLTIGLMAFAGDHIEMALLFFLQTAFFVILGYLKFTERTYILLFWAYMIVTFTGFS 67

Query: 61 YWTIFEMGLPL 71
          YWT+F MG PL
Sbjct: 68 YWTVFIMGKPL 78


>C0ZGD3.1 C0ZGD3_BREBN Conserved hypothetical membrane protein
          Length = 88

 Score = 73.2 bits (178), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 52/69 (75%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGF+T+VI LMAF G+L  MAL+FF  TAFFV L YM  TE+ Y+ +F+G+M L+F GF+
Sbjct: 8  LGFWTIVIALMAFWGELYPMALIFFSLTAFFVALSYMNLTERVYLNIFFGFMFLSFVGFT 67

Query: 61 YWTIFEMGL 69
          Y+T F M +
Sbjct: 68 YYTFFVMPV 76


>A6CRD5.1 A6CRD5_9BACI Putative uncharacterized protein
          Length = 80

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 50/67 (74%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGF+T +  +M F GD+K  +L+F  QT FF++LGY+K +E+ YI +F+GY+ + F GF+
Sbjct: 8  LGFWTGIFAVMFFLGDMKTTSLIFLGQTGFFILLGYLKLSERMYIYIFFGYLTVFFAGFT 67

Query: 61 YWTIFEM 67
          YWT+F M
Sbjct: 68 YWTVFMM 74


>Q4MNS9.1 Q4MNS9_BACCE Putative uncharacterized protein
          Length = 80

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 46/65 (70%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGF+T +  +M + GD+++ ALLF  QT FFV+L Y+K TE+ YI +F  Y+ + F GF+
Sbjct: 8  LGFWTGIFSVMFYVGDMQQAALLFLGQTGFFVLLSYLKLTERMYIYVFGAYLTVFFIGFT 67

Query: 61 YWTIF 65
          Y+T F
Sbjct: 68 YYTTF 72


>B7IXN8.1 B7IXN8_BACC2 Putative uncharacterized protein
          Length = 80

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 46/65 (70%)

Query: 1  LGFFTLVIGLMAFAGDLKEMALLFFLQTAFFVILGYMKFTEKTYILLFWGYMILTFTGFS 60
          LGF+T +  +M + GD+++ ALLF  QT FFV+L Y+K TE+ YI +F  Y+ + F GF+
Sbjct: 8  LGFWTGIFSVMFYVGDMQQAALLFLGQTGFFVLLSYLKLTERMYIYVFGAYLTVFFIGFT 67

Query: 61 YWTIF 65
          Y+T F
Sbjct: 68 YYTTF 72


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.340    0.153    0.498 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 398,277,383
Number of extensions: 12640582
Number of successful extensions: 98232
Number of sequences better than 1.0e-05: 97
Number of HSP's gapped: 98230
Number of HSP's successfully gapped: 97
Length of query: 71
Length of database: 3,060,696,203
Length adjustment: 42
Effective length of query: 29
Effective length of database: 2,665,013,573
Effective search space: 77285393617
Effective search space used: 77285393617
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 126 (53.1 bits)