BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0063.p (216 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG69.1 B3KG69_9BACI Transcription factor, RsfA family 303 8e-81 B1DBW4.1 B1DBW4_9BACL Transcription factor, RsfA family 258 2e-67 C0ZGC9.1 C0ZGC9_BREBN Putative uncharacterized protein 171 4e-41 A4ITP2.1 A4ITP2_GEOTN Probable transcriptional regulatory protein 155 2e-36 B4BPC2.1 B4BPC2_9BACI Transcription factor, RsfA family 155 2e-36 >B3KG69.1 B3KG69_9BACI Transcription factor, RsfA family Length = 216 Score = 303 bits (775), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 151/216 (69%), Positives = 165/216 (76%) Query: 1 MTAVRQDAWSAEDDLILAEITLRHIREGSTQLAAFEEVGEKIGRTSAACGFRWNSCVRKS 60 M+AVRQDAWSAEDDLILAE+TLRHIREGSTQLAAFEEVGE+IGRTSAACGFRWNSCVRK Sbjct: 1 MSAVRQDAWSAEDDLILAEVTLRHIREGSTQLAAFEEVGERIGRTSAACGFRWNSCVRKK 60 Query: 61 YEDAIGIAKSQRQKRSYLKKQPSARGAQVAGLILGDIXXXXXXXXXXXXNSLSIDAVIRF 120 YEDAI +AKSQRQKRSY KKQPSA G QVAGL ++ +LSIDAVIRF Sbjct: 61 YEDAISLAKSQRQKRSYYKKQPSASGPQVAGLAAPEMEHDVYRNDGASEETLSIDAVIRF 120 Query: 121 LRQWKGSFQEAGRQLKMXXXXXXXXXXXXXXXXXXXXXXSKEVNLAQSDYRVVNDDYKAL 180 LRQWKG QE+ RQ K+ KEV+ ++DY VVNDDYKAL Sbjct: 121 LRQWKGGLQESSRQYKLLEKNLREKEDELARLRSENQRLLKEVSEVKTDYHVVNDDYKAL 180 Query: 181 IQIMDRARRLAFLNEEEEEMKTRFKMDANGNLERIE 216 IQIMDRARRLAFLNEE+EE+KTRFKMDANGNLERIE Sbjct: 181 IQIMDRARRLAFLNEEDEELKTRFKMDANGNLERIE 216 >B1DBW4.1 B1DBW4_9BACL Transcription factor, RsfA family Length = 216 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 133/217 (61%), Positives = 151/217 (69%), Gaps = 2/217 (0%) Query: 1 MTAVRQDAWSAEDDLILAEITLRHIREGSTQLAAFEEVGEKIGRTSAACGFRWNSCVRKS 60 MTAVRQDAWS +DDLILAE+TLRHIREGSTQLAAFEEVGE+IGRTSAACGFRWNSCVRK Sbjct: 1 MTAVRQDAWSPDDDLILAEVTLRHIREGSTQLAAFEEVGERIGRTSAACGFRWNSCVRKR 60 Query: 61 YEDAIGIAKSQRQKRSYLKKQPSARGAQVAGLILGDIXXXX-XXXXXXXXNSLSIDAVIR 119 YE+AI IAK QRQKR+YLKKQ V+ + + D LS+D++IR Sbjct: 61 YEEAIQIAKQQRQKRNYLKKQAIVATPHVSSIAVYDAEERAFSANAVTTEEGLSVDSIIR 120 Query: 120 FLRQWKGSFQEAGRQLKMXXXXXXXXXXXXXXXXXXXXXXSKEVNLAQSDYRVVNDDYKA 179 FLRQ+K ++Q+ RQ+K S+EVN Q+DYR VNDDYK Sbjct: 121 FLRQFKTTYQDVSRQIKSFEKELKEKDDEIDRLRDENERLSREVNNVQTDYRAVNDDYKT 180 Query: 180 LIQIMDRARRLAFLNEEEEEMKTRFKMDANGNLERIE 216 LIQIMDRARRLA L EEE K RFKMDANGNLERIE Sbjct: 181 LIQIMDRARRLAVLT-HEEEAKPRFKMDANGNLERIE 216 >C0ZGC9.1 C0ZGC9_BREBN Putative uncharacterized protein Length = 213 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 130/237 (54%), Gaps = 46/237 (19%) Query: 1 MTAVRQDAWSAEDDLILAEITLRHIREGSTQLAAFEEVGEKIGRTSAACGFRWNSCVRKS 60 M A RQDAW+ +DDL+LAE+TLRHIREG TQLAAFEEVG+++GRT+AACGFRWNSCVRK Sbjct: 1 MVASRQDAWTEDDDLVLAEVTLRHIREGGTQLAAFEEVGQRLGRTAAACGFRWNSCVRKR 60 Query: 61 YEDAIGIAKSQRQKRSYLKKQPSARGAQVAGLILGDIXXXXXXXXXXXXNSLS------- 113 Y+ AI IAKSQRQ+ LKK LG I +L Sbjct: 61 YDAAISIAKSQRQQ---LKK-------------LGRIQAPPPVVAEVEVVTLHTKRAETP 104 Query: 114 --------------IDAVIRFLRQWKGSFQEAGRQLKMXXXXXXXXXXXXXXXXXXXXXX 159 I+AVIR L K E R+L+ Sbjct: 105 VAEVQMYTDVEEQQIEAVIRMLVNQK----ELTRRLRQLEQELEGKELELKELKEAHERA 160 Query: 160 SKEVNLAQSDYRVVNDDYKALIQIMDRARRLAFLNEEEEEMKTRFKMDANGNLERIE 216 KE++ Q VNDDY+AL+QIM+RAR+LAFL EE+ K FKMD NGNLER+E Sbjct: 161 RKELDQVQG----VNDDYRALVQIMERARKLAFLQEEDSN-KAIFKMDENGNLERVE 212 >A4ITP2.1 A4ITP2_GEOTN Probable transcriptional regulatory protein Length = 218 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 13/222 (5%) Query: 1 MTAVRQDAWSAEDDLILAEITLRHIREGSTQLAAFEEVGEKIGRTSAACGFRWNSCVRKS 60 M RQDAW+ EDDL+LAE LRH+REGSTQL AFEEVG+K+ RTSAACGFRWN+ VR Sbjct: 1 MMKQRQDAWTEEDDLLLAETVLRHVREGSTQLNAFEEVGDKLNRTSAACGFRWNAVVRHR 60 Query: 61 YEDAIGIAKSQRQKRS-YLKKQPSARGAQVAGLI------LGDIXXXXXXXXXXXXNSLS 113 YE+A+ +AK QR++R L KQ AR ++ LGDI S++ Sbjct: 61 YEEALQLAKKQRKERQRLLAKQGGARKRRLYEPPMPSLEELGDIMQLPAVIPAPQPQSVT 120 Query: 114 IDAVIRFLRQWKGSFQEAGRQLKMXXXXXXXXXXXXXXXXXXXXXXSKEVNLAQSDYRVV 173 +D VI FL+ +FQ ++ + ++V + + V Sbjct: 121 LDQVIAFLK----TFQSHEQKRETLIKENERLRREIEELKQKNKELEEQVAKLEENSSTV 176 Query: 174 NDDYKALIQIMDRARRLAFLNEEEEEMKTRFKMDANGNLERI 215 +D++ L++I++RAR++ +EEEE F+MD NGNLE+I Sbjct: 177 QEDFETLVKIINRARKMVL--KEEEERGLTFRMDPNGNLEKI 216 >B4BPC2.1 B4BPC2_9BACI Transcription factor, RsfA family Length = 218 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 13/222 (5%) Query: 1 MTAVRQDAWSAEDDLILAEITLRHIREGSTQLAAFEEVGEKIGRTSAACGFRWNSCVRKS 60 M RQDAW+ EDDL+LAE LRH+REGSTQL AFEEVG+K+ RTSAACGFRWN+ VR Sbjct: 1 MMKQRQDAWTEEDDLLLAETVLRHVREGSTQLNAFEEVGDKLNRTSAACGFRWNAVVRHR 60 Query: 61 YEDAIGIAKSQRQKRS-YLKKQPSARGAQVAGLI------LGDIXXXXXXXXXXXXNSLS 113 YE+A+ +AK QR++R L KQ AR ++ LGDI S++ Sbjct: 61 YEEALQLAKKQRKERQRLLAKQGGARKRRLYEPPMPSLEELGDIMQLPAVIPAPQPQSVT 120 Query: 114 IDAVIRFLRQWKGSFQEAGRQLKMXXXXXXXXXXXXXXXXXXXXXXSKEVNLAQSDYRVV 173 +D VI FL+ +FQ ++ + ++V + + V Sbjct: 121 LDQVIAFLK----TFQSHEQKRETLIKENERLRREIEELKQKNKELEEQVAKLEENSSTV 176 Query: 174 NDDYKALIQIMDRARRLAFLNEEEEEMKTRFKMDANGNLERI 215 +D++ L++I++RAR++ +EEEE F+MD NGNLE+I Sbjct: 177 QEDFETLVKIINRARKMVL--KEEEERGLTFRMDPNGNLEKI 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 944,799,927 Number of extensions: 28682451 Number of successful extensions: 69483 Number of sequences better than 1.0e-05: 305 Number of HSP's gapped: 69441 Number of HSP's successfully gapped: 310 Length of query: 216 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 86 Effective length of database: 1,835,964,253 Effective search space: 157892925758 Effective search space used: 157892925758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)