BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0059.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG75.1 B3KG75_9BACI Binding-protein-dependent transport system... 490 e-137 B1DEI3.1 B1DEI3_9BACL Binding-protein-dependent transport system... 407 e-112 C0ZC56.1 C0ZC56_BREBN Oligopeptide ABC transporter permease protein 385 e-105 Q2B8Z1.1 Q2B8Z1_9BACI Oligopeptide ABC transporter (Permease) 360 1e-97 A7Z3D3.1 A7Z3D3_BACA2 OppC 352 2e-95 >B3KG75.1 B3KG75_9BACI Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust. Identities = 242/304 (79%), Positives = 275/304 (90%) Query: 12 VNLKPEDFQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGP 71 +NLKPEDFQKIG DEKQ+EVIQRESLS+WRDSW+RLR+NK+AMT LI++ LIV+ ++IGP Sbjct: 13 LNLKPEDFQKIGPDEKQSEVIQRESLSSWRDSWERLRKNKLAMTGLIIMILIVIMAIIGP 72 Query: 72 LFSKYNYYSNDLLSTNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIG 131 + SKY+Y +NDL++TN PPSS+HWFGTDDLGRD+FVRTW GARISL VGLAAAAIDL IG Sbjct: 73 MISKYDYETNDLMNTNMPPSSEHWFGTDDLGRDVFVRTWMGARISLTVGLAAAAIDLMIG 132 Query: 132 VIYGGIMGFFGGRVDNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITM 191 VIYGGIMG+FGGRVD MNK +EILYSIPY EPSLGTIILALTITGWI M Sbjct: 133 VIYGGIMGYFGGRVDEFMNKFAEILYSIPYLLVTILLLVVFEPSLGTIILALTITGWINM 192 Query: 192 SWIVRGEIMQLKNREFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAF 251 SWIVRGEIMQLK+RE+VLASRSMGAG+ RLLFRHL+PNA+GPIIVT+TLSVP+AIFAEAF Sbjct: 193 SWIVRGEIMQLKSREYVLASRSMGAGTARLLFRHLIPNAMGPIIVTLTLSVPSAIFAEAF 252 Query: 252 LSFLGLGVQAPIASLGSMINDSLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDALDP 311 LSFLGLGVQAP+AS GSMIND+L+GW+YYPWR LFPA+ ISLTML+FNIFGDGLRDALDP Sbjct: 253 LSFLGLGVQAPVASWGSMINDALSGWMYYPWRMLFPALFISLTMLAFNIFGDGLRDALDP 312 Query: 312 KLKK 315 KLKK Sbjct: 313 KLKK 316 >B1DEI3.1 B1DEI3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 312 Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/306 (62%), Positives = 245/306 (80%), Gaps = 4/306 (1%) Query: 14 LKPEDFQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGPL- 72 L+P DF+K+ DEKQ E + RES+SAW+D+W RL+ N+MAM +L +L LIVL ++ G Sbjct: 7 LQPNDFEKLSHDEKQTETVVRESISAWKDAWFRLKSNRMAMISLWILALIVLMAIFGQAI 66 Query: 73 ---FSKYNYYSNDLLSTNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLF 129 F+ ++ SNDL +TN+ PS +HWFGTD LGRD+F RTW GA ISL VG+ AA +DL Sbjct: 67 AHQFTGNDFSSNDLKATNQAPSGNHWFGTDGLGRDMFARTWMGAGISLQVGIYAAIVDLI 126 Query: 130 IGVIYGGIMGFFGGRVDNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWI 189 +GVI G IMG+FGG+VD ++N+I EILYSIP MEPS+ TII+AL+ITGWI Sbjct: 127 VGVIMGSIMGYFGGKVDEILNRICEILYSIPSLLVVILLIVVMEPSMFTIIVALSITGWI 186 Query: 190 TMSWIVRGEIMQLKNREFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAE 249 M+WIVRG+IMQLKN+E+VLA+R++GA R++F+HL+PNA+GPIIVTIT++VPNAIFAE Sbjct: 187 NMAWIVRGQIMQLKNQEYVLAARALGANPVRIMFKHLIPNAMGPIIVTITMTVPNAIFAE 246 Query: 250 AFLSFLGLGVQAPIASLGSMINDSLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDAL 309 AFLSFLGLGVQ+P ASLG++IND++ YPWR L+PAIL+SLTML FNIFGDGLRDAL Sbjct: 247 AFLSFLGLGVQSPAASLGTLINDAIKAMTVYPWRMLYPAILLSLTMLCFNIFGDGLRDAL 306 Query: 310 DPKLKK 315 DPK+KK Sbjct: 307 DPKMKK 312 >C0ZC56.1 C0ZC56_BREBN Oligopeptide ABC transporter permease protein Length = 305 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/303 (59%), Positives = 241/303 (79%) Query: 13 NLKPEDFQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGPL 72 NL E F+ I +D +QAE I+R SLS W D W+R+R NK+AM ++I + +++ +++ P Sbjct: 3 NLTKEHFEPISVDLRQAESIKRPSLSFWSDVWRRMRMNKVAMASMIFIIALIVCAIVVPW 62 Query: 73 FSKYNYYSNDLLSTNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIGV 132 + +Y++ DL NK PS++HWFG+DDLGRD+F R WYGARISL VGLAAA IDL IGV Sbjct: 63 LTPQDYFTTDLAGKNKKPSAEHWFGSDDLGRDVFERIWYGARISLQVGLAAAFIDLIIGV 122 Query: 133 IYGGIMGFFGGRVDNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITMS 192 I+GGI GF+GGRVD +M + ++IL++IPY +EP +GTII+ALTITGWI M+ Sbjct: 123 IWGGIAGFYGGRVDEMMMRFADILFAIPYLLVVILLMVVLEPGVGTIIIALTITGWIGMA 182 Query: 193 WIVRGEIMQLKNREFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAFL 252 IVRG+I+QLKN+EFVLA+RS+GA + RL+F+HL+PNA+GPIIVT++L+VP+AIFAE+FL Sbjct: 183 RIVRGQILQLKNQEFVLAARSLGADANRLIFKHLIPNALGPIIVTLSLTVPSAIFAESFL 242 Query: 253 SFLGLGVQAPIASLGSMINDSLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDALDPK 312 SF+GLGV APIAS G+M N+ L YYPWR FPAI ISLT+L+FN+FGDGLRDA+DP+ Sbjct: 243 SFIGLGVSAPIASWGTMSNEGLPAMKYYPWRLTFPAIFISLTILAFNLFGDGLRDAVDPR 302 Query: 313 LKK 315 L+K Sbjct: 303 LRK 305 >Q2B8Z1.1 Q2B8Z1_9BACI Oligopeptide ABC transporter (Permease) Length = 305 Score = 360 bits (923), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 168/303 (55%), Positives = 224/303 (73%) Query: 13 NLKPEDFQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGPL 72 L + F+ +G AE I + SLS W+D R R+NK+AM +++L ++V ++ GP Sbjct: 3 QLSKDKFRVVGTQTTDAEKISKPSLSFWKDVTLRFRKNKLAMFGIVLLAILVFMAIFGPY 62 Query: 73 FSKYNYYSNDLLSTNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIGV 132 + Y+Y SNDL + N+ PSS+HWFGTDDLGRD+F RTW GARISL +GLAAA IDLFIGV Sbjct: 63 MTPYDYASNDLGNKNQSPSSEHWFGTDDLGRDVFARTWEGARISLFIGLAAALIDLFIGV 122 Query: 133 IYGGIMGFFGGRVDNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITMS 192 ++GGI GF GGR D M + +++LY IPY + S+GT+ILA+TITGWI MS Sbjct: 123 LWGGIAGFKGGRTDEYMMRAADVLYGIPYLLLVILLMVVLGQSVGTMILAMTITGWINMS 182 Query: 193 WIVRGEIMQLKNREFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAFL 252 IVRG+++ LKN+E+VLASR++GA R++F+HL+PN +GPI+VT+TL+VP+AIF EAFL Sbjct: 183 RIVRGQVLSLKNQEYVLASRTLGANVSRIMFKHLIPNTMGPILVTMTLTVPSAIFTEAFL 242 Query: 253 SFLGLGVQAPIASLGSMINDSLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDALDPK 312 S+LGLG+ P+AS G+M ND L YYPWR FPA I LT+ +FN+ GDGLRDALDP+ Sbjct: 243 SYLGLGLTPPVASWGTMANDGLPALRYYPWRLFFPATFICLTIFAFNVIGDGLRDALDPR 302 Query: 313 LKK 315 L+K Sbjct: 303 LRK 305 >A7Z3D3.1 A7Z3D3_BACA2 OppC Length = 305 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 166/303 (54%), Positives = 224/303 (73%) Query: 13 NLKPEDFQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGPL 72 N+ F+ + AE I ++SLS W+D+ R R NK+AM +++ LI+L ++ P+ Sbjct: 3 NIPKNMFEPASANAGDAEKINKKSLSLWKDAMLRFRSNKLAMVGFVLIVLIILMAIFAPV 62 Query: 73 FSKYNYYSNDLLSTNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIGV 132 FS+Y+Y + +LL+ +K PS DHWFGTDDLGRDIFVRTW GARIS+ +G+AAA +DL IGV Sbjct: 63 FSRYDYATTNLLNADKAPSKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGV 122 Query: 133 IYGGIMGFFGGRVDNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITMS 192 I+G I GF GGR D VM +I++IL+++P + L TII+A+TITGWI M+ Sbjct: 123 IWGSISGFRGGRTDEVMMRIADILWAVPSLLMVILLMVVLPKGLLTIIVAMTITGWINMA 182 Query: 193 WIVRGEIMQLKNREFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAFL 252 IVRG+++QLKN+E+VLAS+++GA + RLLF+H++PNA+G I+VT+TL+VP AIF EAFL Sbjct: 183 RIVRGQVLQLKNQEYVLASQTLGAKTGRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFL 242 Query: 253 SFLGLGVQAPIASLGSMINDSLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDALDPK 312 S+LGLGV AP+AS G+M +D L YYPWR FPA I L M FN+ GDGLRDALDPK Sbjct: 243 SYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICLAMFGFNVVGDGLRDALDPK 302 Query: 313 LKK 315 L+K Sbjct: 303 LRK 305 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,806,121,365 Number of extensions: 72278230 Number of successful extensions: 305041 Number of sequences better than 1.0e-05: 6058 Number of HSP's gapped: 296842 Number of HSP's successfully gapped: 6100 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 131 (55.1 bits)