BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0057.p (306 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG77.1 B3KG77_9BACI ABC transporter related 549 e-154 B1DEI1.1 B1DEI1_9BACL Oligopeptide/dipeptide ABC transporter, AT... 462 e-128 B3K9D6.1 B3K9D6_9BACI ABC transporter related 436 e-120 C0ZC58.1 C0ZC58_BREBN Oligopeptide ABC transporter ATP binding p... 409 e-112 B0KBM7.1 B0KBM7_THEP3 Oligopeptide/dipeptide ABC transporter, AT... 405 e-111 >B3KG77.1 B3KG77_9BACI ABC transporter related Length = 312 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 267/308 (86%), Positives = 288/308 (93%), Gaps = 5/308 (1%) Query: 4 NLIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYEPT 63 +LIEV+GLKKYFNVGKG+VLKAVD++NF IREGETLGMVGESGCGK+TAGRT+LRLYEPT Sbjct: 5 HLIEVKGLKKYFNVGKGQVLKAVDDLNFFIREGETLGMVGESGCGKSTAGRTILRLYEPT 64 Query: 64 AGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAGSR 123 AGSV +NGTDIYKLS GKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAGSR Sbjct: 65 AGSVNFNGTDIYKLSPGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAGSR 124 Query: 124 AERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISALDV 183 AERKKRIEELLDMVGLN DHATRYPHEFSGGQRQRIGIAR+LAVNPKFI+CDEPISALDV Sbjct: 125 AERKKRIEELLDMVGLNSDHATRYPHEFSGGQRQRIGIARALAVNPKFIICDEPISALDV 184 Query: 184 SIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYANPI 243 SIQAQVVNLLK+LQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELA+SEELYANPI Sbjct: 185 SIQAQVVNLLKDLQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELADSEELYANPI 244 Query: 244 HPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPIYAA-GE----KTNDSDYQLVEVSKG 298 HPYTK+LLSAIP+PDPE+EANKKR+ L D+ PI AA GE + + D +LVEVSKG Sbjct: 245 HPYTKTLLSAIPIPDPEIEANKKRLKLEDDSQGPISAAKGEDGTVQLDVKDSELVEVSKG 304 Query: 299 HFVAKQYA 306 H+VAK YA Sbjct: 305 HWVAKAYA 312 >B1DEI1.1 B1DEI1_9BACL Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 320 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/318 (68%), Positives = 268/318 (84%), Gaps = 12/318 (3%) Query: 1 LSKNLIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLY 60 +S+ L++V L+K+FN+G G +LKAV+ I+F+I +GET+G+VGESGCGK+TAGRT+LRLY Sbjct: 1 MSEPLVKVSNLRKFFNLGGGNILKAVNEIDFSIAKGETVGVVGESGCGKSTAGRTILRLY 60 Query: 61 EPTAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMA 120 EPT+G+V +NG DIYK+ K+K MRRDMQMIFQDPYASLNPR T++D+IGEALDIHG+ Sbjct: 61 EPTSGNVTFNGEDIYKMKGAKLKQMRRDMQMIFQDPYASLNPRMTITDVIGEALDIHGLV 120 Query: 121 GSRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISA 180 GSRAERK+R+E+LLD+VGLN DHATRYPHEFSGGQRQRIGIAR+LAV+PKFI+ DEPISA Sbjct: 121 GSRAERKRRVEDLLDLVGLNPDHATRYPHEFSGGQRQRIGIARALAVDPKFIIADEPISA 180 Query: 181 LDVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYA 240 LDVSIQAQVVNL+++LQ ++GLTYLFIAHDLSMVKHISDRVAVMYLGK+VELAES ELY+ Sbjct: 181 LDVSIQAQVVNLMQDLQRKMGLTYLFIAHDLSMVKHISDRVAVMYLGKIVELAESSELYS 240 Query: 241 NPIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPIYA------------AGEKTNDS 288 +P HPYT++LLSA P+PDPE+EA ++RI L +L SPI A +K Sbjct: 241 SPAHPYTRALLSANPIPDPEIEATRERIVLAGDLPSPINPPAGCQFHTRCPMATDKCKTV 300 Query: 289 DYQLVEVSKGHFVAKQYA 306 + +LVEV KGHF + YA Sbjct: 301 EPKLVEVKKGHFASCHYA 318 >B3K9D6.1 B3K9D6_9BACI ABC transporter related Length = 580 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/298 (70%), Positives = 251/298 (84%), Gaps = 6/298 (2%) Query: 5 LIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYEPTA 64 L+EV+ LK+YF++GKG VLKAV++I+F I+ GETLG+VGESG GK+T GR +LRL++PT Sbjct: 284 LLEVKSLKQYFDMGKGNVLKAVNDISFHIQAGETLGVVGESGSGKSTTGRAILRLHQPTG 343 Query: 65 GSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAGSRA 124 G V Y G + +LS +MKAMRR MQMIFQDPYASLNPR V DIIGEALD+H + GS+ Sbjct: 344 GEVLYQGMSVNRLSPSEMKAMRRHMQMIFQDPYASLNPRLKVVDIIGEALDVHKLTGSKQ 403 Query: 125 ERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISALDVS 184 ERKKR+EELLDMVGL+ +ATRYPHEFSGGQRQRIGIAR+LAV PKFIVCDEP+SALDVS Sbjct: 404 ERKKRVEELLDMVGLDPAYATRYPHEFSGGQRQRIGIARALAVEPKFIVCDEPLSALDVS 463 Query: 185 IQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYANPIH 244 IQ+Q+V LL+ELQ RLGLTYLFIAHDLSMVKHISDRVAVMY+GK+VELAESEELY+NP H Sbjct: 464 IQSQIVKLLEELQHRLGLTYLFIAHDLSMVKHISDRVAVMYMGKIVELAESEELYSNPQH 523 Query: 245 PYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPIYAAGEKTNDSDYQLVEVSKGHFVA 302 YTKSLL+AIPVPDP++E+ KKR+ L + G +K N +LVEVS+GH+VA Sbjct: 524 DYTKSLLAAIPVPDPKIESKKKRVLLEERTGE------DKYNLEHSELVEVSEGHWVA 575 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 111/272 (40%), Positives = 173/272 (63%), Gaps = 10/272 (3%) Query: 5 LIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLY-EPT 63 +++V+ L F + AV ++F +++GETLG+VGESG GK+ R+++RL P Sbjct: 4 ILQVKNLSVAFQ-SRDSEFHAVRGVSFEVKKGETLGIVGESGSGKSVTARSIMRLLPSPP 62 Query: 64 A----GSVKYNGTDIYKLSAGKMKAMR-RDMQMIFQDPYASLNPRFTVSDIIGEALDIHG 118 + G + + G ++ + + +M+++R RD+ MIFQDP SLNP + + I E+L H Sbjct: 63 SYMKDGEILFLGQNLAEKTEKEMESIRGRDIGMIFQDPMTSLNPTIRIGEQISESLVKHQ 122 Query: 119 MAGSRAERKKRIEELLDMVGLNHDHA--TRYPHEFSGGQRQRIGIARSLAVNPKFIVCDE 176 S+ E K++ ++L +VG+ + A +YPHEFSGG RQR+ IA +LA P ++ DE Sbjct: 123 KL-SKQEAKQQAIDMLKLVGIPNSEARYNQYPHEFSGGMRQRVMIAIALACRPALLIADE 181 Query: 177 PISALDVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESE 236 P +ALDV+IQAQ++NL+K +Q+R G + + I HDL +V + DRVAVM G +VE +E Sbjct: 182 PTTALDVTIQAQILNLMKNMQERFGSSIILITHDLGVVAGMCDRVAVMKDGVIVETGTTE 241 Query: 237 ELYANPIHPYTKSLLSAIPVPDPEVEANKKRI 268 E++ NP HPYT LL+A+P D + +A I Sbjct: 242 EIFENPQHPYTLKLLNALPRLDEKKKAKPAPI 273 >C0ZC58.1 C0ZC58_BREBN Oligopeptide ABC transporter ATP binding protein Length = 319 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/276 (70%), Positives = 238/276 (86%), Gaps = 2/276 (0%) Query: 3 KNLIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYEP 62 +NLIEV LKK+F++G LKAV++I+F I+ GETLG+VGESGCGK+TAGRT+LRLY+ Sbjct: 5 ENLIEVRNLKKFFSIGDN-TLKAVNDISFEIKRGETLGIVGESGCGKSTAGRTILRLYDA 63 Query: 63 TAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAGS 122 T G V + G I L+ +MKAMRR+MQMIFQDPYASLNPR TV DIIGEALDIHG+A S Sbjct: 64 TEGDVLFEGKSIMNLNQQEMKAMRRNMQMIFQDPYASLNPRMTVGDIIGEALDIHGLA-S 122 Query: 123 RAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISALD 182 +RK+RI+ELL +V LN +H R+PHEFSGGQRQRIGIAR+LAV PKFIVCDEPISALD Sbjct: 123 GQKRKERIQELLSLVSLNPEHMNRFPHEFSGGQRQRIGIARALAVEPKFIVCDEPISALD 182 Query: 183 VSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYANP 242 VS+QAQVVNLL++LQ+++GLTY+FIAHDLSMVK+ISDRVAVMYLGKMVELAES+ LY P Sbjct: 183 VSVQAQVVNLLEQLQEKMGLTYMFIAHDLSMVKYISDRVAVMYLGKMVELAESDALYEKP 242 Query: 243 IHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPI 278 +HPYT++LLSAIP+PDPE+E N++RI L ++ SP+ Sbjct: 243 LHPYTQALLSAIPIPDPEIERNRERIVLQGDVPSPM 278 >B0KBM7.1 B0KBM7_THEP3 Oligopeptide/dipeptide ABC transporter, ATPase subunit Length = 320 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/310 (64%), Positives = 240/310 (77%), Gaps = 13/310 (4%) Query: 5 LIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYEPTA 64 L+E++ LKKYFNVG+G VLKAVDN+N I EGETLG+VGESGCGKTT GRT++RLYEPTA Sbjct: 8 LVEIKNLKKYFNVGRGAVLKAVDNVNLQIIEGETLGLVGESGCGKTTLGRTIVRLYEPTA 67 Query: 65 GSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAGSRA 124 G V + G +++KL+ ++K R +QMIFQDPYASLNPR TV DIIGE +DIHG+ ++ Sbjct: 68 GQVLFEGKNVHKLTGQQLKEFNRKVQMIFQDPYASLNPRMTVGDIIGEGIDIHGLYKNK- 126 Query: 125 ERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISALDVS 184 ER RI ELL +VGLN +HA R+PHEFSGGQRQRIGIAR+LAV PKFIV DEPISALDVS Sbjct: 127 ERTDRIYELLSLVGLNKEHANRFPHEFSGGQRQRIGIARALAVEPKFIVADEPISALDVS 186 Query: 185 IQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYANPIH 244 IQAQV+NLL ELQ +L LTY+FIAHDLSMVK++SDR+AVMYLG +VEL SE+L+ P+H Sbjct: 187 IQAQVINLLMELQQKLKLTYIFIAHDLSMVKYVSDRIAVMYLGHVVELTTSEDLHNRPLH 246 Query: 245 PYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPIYA------------AGEKTNDSDYQL 292 PYT++LLSAIPVPDPE E K+RI L ++ SPI A + +L Sbjct: 247 PYTQALLSAIPVPDPETERKKERILLEGDVPSPINPPKGCRFAKRCRYAKPICTEQQPEL 306 Query: 293 VEVSKGHFVA 302 EV K HFVA Sbjct: 307 KEVEKNHFVA 316 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,776,562,558 Number of extensions: 73825948 Number of successful extensions: 513939 Number of sequences better than 1.0e-05: 90846 Number of HSP's gapped: 400468 Number of HSP's successfully gapped: 98185 Length of query: 306 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 171 Effective length of database: 1,788,859,178 Effective search space: 305894919438 Effective search space used: 305894919438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)