BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0056.p (543 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG78.1 B3KG78_9BACI Putative uncharacterized protein 622 e-176 B1DBW7.1 B1DBW7_9BACL Putative uncharacterized protein 506 e-141 C0ZGB9.1 C0ZGB9_BREBN Putative uncharacterized protein yllA 327 2e-87 C2MPP9.1 C2MPP9_BACCE Putative uncharacterized protein 318 1e-84 B5V8I6.1 B5V8I6_BACCE Putative uncharacterized protein 317 2e-84 >B3KG78.1 B3KG78_9BACI Putative uncharacterized protein Length = 543 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 303/543 (55%), Positives = 390/543 (71%) Query: 1 MNVIPEPLPGGSALARDYIHHYEKVGHLYGGDFXXXXXXXXXXXWLDSTEGLRADRAGIA 60 MN++PEPL S LA DYIHH+++V YG D WLD +E R R +A Sbjct: 1 MNIVPEPLSLASRLAHDYIHHFDRVSGFYGEDHRGEHGYAERVQWLDLSEDKRIQRKSLA 60 Query: 61 ECLRQYNLKWNPHPAVMDSLALLEQQGTLVITAGQQSGLFTGPLFVIYKAITTIQAAKEA 120 CLR YN K N HPAV SL LLEQ GT+ + GQQSGLFTGPL VIYKAIT IQAA+EA Sbjct: 61 ACLRTYNQKHNDHPAVHKSLQLLEQPGTVTMVGGQQSGLFTGPLLVIYKAITVIQAAREA 120 Query: 121 AAQLGRPVVPLFWIAGEDHDWDEVNHTFILNRTGEVTKLKLDKAGDLRSSVSNIKVEEES 180 +L RPVVP+FWIAGEDHDWDEVNHT+ L +++K+KLD LR+SVS V EE Sbjct: 121 EERLNRPVVPVFWIAGEDHDWDEVNHTYFLTPDQQLSKIKLDAKDGLRTSVSYTDVPEED 180 Query: 181 WQQIIEQLDGLLQDSEFKPQVMEVIREXXXXXXXXXXXXXKLMGSLFGRFGLILLDSADP 240 W ++ +L L DSE+K ++++ + KL+GS+FG++GLILLDSADP Sbjct: 181 WSMMLAELQTQLADSEYKADLLKLASQSFDGSAGLSEAFAKLIGSMFGKYGLILLDSADP 240 Query: 241 GLRRLEAPMFQTLIKHNDELEAAYQAAAGEITDSGYELQAAVAAGSANLFYIHEGTRLLL 300 GLR LE P+F++LI N+ L +YQ AA +I GYE+QA V+ ANLFY+HEG RLLL Sbjct: 241 GLRALEVPIFESLITRNETLGLSYQQAARDIDGLGYEVQADVSENGANLFYLHEGRRLLL 300 Query: 301 HKEEGRFTDRKGTVSFSREELLEQLEARPEQFSNNVLTRPLMQDYVLPVLATVLGQGELA 360 ++ G F+DRKG VS + EELL+ L PE+FSNNVLTRP+MQD +LPVL T+LG GE++ Sbjct: 301 YRGGGVFSDRKGIVSLTEEELLQDLHQFPERFSNNVLTRPIMQDSLLPVLGTILGPGEIS 360 Query: 361 YWAIPRLAFKVAGEQMPLILPRMSFTVVEGTLHKHMDKYQLVFGDVLLGLDSKRKEWLAA 420 YWAI R AF G QMPLI+PRMSF++V+G +HK M+KY L F DV L L KR+ WLA+ Sbjct: 361 YWAITRYAFADMGLQMPLIIPRMSFSIVDGAVHKLMEKYGLSFEDVQLRLSEKREAWLAS 420 Query: 421 QDELGLERRFEDTKAAFLAMYEPLIEQLGSIQAGLLKLGANNKDKILDQITFLQAKAQDA 480 +DEL LE RF +T+ F A+Y+PLIE LG +Q+GLLKLG NKDKIL+Q+ +L +K+++A Sbjct: 421 KDELNLEERFSETRKQFEALYQPLIEDLGKMQSGLLKLGLTNKDKILEQMDYLLSKSRNA 480 Query: 481 MEKQNEAALRQWERIELSLMPLGKLQERVYNVMFYLNRYGPAWLDELMKIPADYSGTHRI 540 +E+Q+EAAL QW+RIE +L+P GK QERVYN++ Y+NRYG +D LM+IP D SG HR+ Sbjct: 481 LEQQHEAALAQWKRIEQTLLPEGKPQERVYNILEYMNRYGLNLVDRLMEIPYDASGMHRV 540 Query: 541 IYM 543 +Y+ Sbjct: 541 VYV 543 >B1DBW7.1 B1DBW7_9BACL Putative uncharacterized protein Length = 545 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 259/547 (47%), Positives = 364/547 (66%), Gaps = 6/547 (1%) Query: 1 MNVIPEPLPGGSALARDYIHHYE-KVGHLYGGDFXXXXXXXXXXXWLDSTEGLRADRAGI 59 MN LP L YIH + + LYG L+ G RA+ A + Sbjct: 1 MNTEHYDLPSAQPLTEAYIHRTDANIDSLYGYHAGREQDWAERLKKLEELSGSRANSAEL 60 Query: 60 AECLRQYNLKWNPHPAVMDSLALLEQQGTLVITAGQQSGLFTGPLFVIYKAITTIQAAKE 119 AE LRQYN + P V S+ + +G VI GQQ+GL++G L VI+KA++ + AK Sbjct: 61 AEVLRQYNSPYTT-PEVDASIRAI-AEGAPVIIGGQQAGLWSGALLVIHKAVSIVSGAKW 118 Query: 120 AAAQLGRPVVPLFWIAGEDHDWDEVNHTFILNRTGEVTKLKLDKAGDLRSSVSNIKVEEE 179 A+ +LGR VVP+FWIAGEDHDWDE NHT++LN E+ KL + + R+SVS V+ + Sbjct: 119 ASEKLGRTVVPVFWIAGEDHDWDEANHTYVLNAEQELRKLIVQRPEGPRTSVSRTSVDTD 178 Query: 180 SWQQIIEQLDGLLQDSEFKPQVMEVIREXXXXXXXXXXXXXKLMGSLFGRFGLILLDSAD 239 SW ++E+L+ L S+FKP ++E +R+ ++ LFG+ GL+LLD+ D Sbjct: 179 SWNALLEELEQTLPHSDFKPGLLEQLRQIAGQSRSLSDMFAGILAFLFGKEGLVLLDADD 238 Query: 240 PGLRRLEAPMFQTLIKHNDELEAAYQAAAGEITDSGYELQAAVAAGSANLFYIHEGT--- 296 P LR++EAPMF+ +I+ NDELEAAY++AA ++ GY+LQA V GSANLF + + Sbjct: 239 PKLRKIEAPMFRRIIEENDELEAAYKSAAEKVKSLGYQLQADVVEGSANLFVFNSASGDE 298 Query: 297 RLLLHKEEGRFTDRKGTVSFSREELLEQLEARPEQFSNNVLTRPLMQDYVLPVLATVLGQ 356 R LLHK +G+F DRK T +++E+LL+ E +P Q SNNVLTRP+MQDY+ PVL TVLG Sbjct: 299 RTLLHKRDGQFQDRKATAFWTKEQLLQLAEEQPSQLSNNVLTRPIMQDYLFPVLGTVLGP 358 Query: 357 GELAYWAIPRLAFKVAGEQMPLILPRMSFTVVEGTLHKHMDKYQLVFGDVLLGLDSKRKE 416 GE+AYWA+ AF+ G +MP+I+PRMSFT+VEGT+ KHM KY+L F DV +++++ Sbjct: 359 GEIAYWALTGEAFRKLGMEMPIIVPRMSFTLVEGTIAKHMMKYELSFEDVAKRFEARKQA 418 Query: 417 WLAAQDELGLERRFEDTKAAFLAMYEPLIEQLGSIQAGLLKLGANNKDKILDQITFLQAK 476 WL+ QD+L +E RF++ K +F AMY PL+E GSIQ GLLKLG N+ KI++QI +L+AK Sbjct: 419 WLSEQDQLSIEDRFQEVKQSFTAMYGPLLELAGSIQPGLLKLGETNRQKIVEQIEYLEAK 478 Query: 477 AQDAMEKQNEAALRQWERIELSLMPLGKLQERVYNVMFYLNRYGPAWLDELMKIPADYSG 536 +DA KQ +A++RQ +RI LSL P GK QERV N+ Y NRYG AWL++L+++P +G Sbjct: 479 TKDAFNKQYDASIRQLDRIALSLWPSGKPQERVINMSGYWNRYGSAWLEKLLELPFSPTG 538 Query: 537 THRIIYM 543 H+++Y+ Sbjct: 539 GHQLVYL 545 >C0ZGB9.1 C0ZGB9_BREBN Putative uncharacterized protein yllA Length = 540 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 187/547 (34%), Positives = 308/547 (56%), Gaps = 11/547 (2%) Query: 1 MNVIPEPLPGGSALARDYIHHYEKVGHLYGGDFXXXXXXXXXXXWLDSTEGLRADRAGIA 60 MNV LP + LA++Y + + WL S R + Sbjct: 1 MNVECLALPLANPLAQEYQQQNASALQFFAHNPYREQSYRERVEWLQSQS--YPHRNQLV 58 Query: 61 ECLRQYNLKWNPHPAVMDSLALLEQQGTLVITAGQQSGLFTGPLFVIYKAITTIQAAKEA 120 E L ++N + HP + ++ LL++ T V+ GQQ+G+ GPL+ + KA+ IQAAK Sbjct: 59 EGLYRFNKEMGSHPEALKNIELLKRPDTYVVIGGQQAGVLGGPLYTVNKAVHLIQAAKRL 118 Query: 121 AAQLGRPVVPLFWIAGEDHDWDEVNHTFILNRTGE---VTKLKLDKAGDLRSSVSNIKVE 177 +A+L V+P+FWIAGEDHD DE++H + G+ +L L+K G R SVS + ++ Sbjct: 119 SAELQANVIPVFWIAGEDHDIDEIDHVYWGADDGKRLHKERLALNKKG--RQSVSTLPLD 176 Query: 178 EESWQQIIEQL-DGLLQDSEFKPQVMEVIREXXXXXXXXXXXXXKLMGSLFGRFGLILLD 236 E Q +E+ G + +E K Q+ E++ + +LM +FG+ GL+L++ Sbjct: 177 PELCTQFLEKFFQGQTETAETK-QIRELLTQTAADSRTVAEWFARLMAKMFGKHGLVLVE 235 Query: 237 SADPGLRRLEAPMFQTLIKHNDELEAAYQAAAGEITDSGYELQAAVAAGSANLFYIHEGT 296 S+ P +R L+ P+F +I++N++L AA I+ +GY LQ V ANLF Sbjct: 236 SSLPFVRELQQPIFSQIIENNEQLTKVLLRAADRISTAGYPLQLQVEEHQANLFVYEGDD 295 Query: 297 RLLLHKEEGRFTDRKGTVSFSREELLEQLEARPEQFSNNVLTRPLMQDYVLPVLATVLGQ 356 RLLL + RF +R+ ++SR+ELL+Q+ PE+FS NV+TR LMQ+++ P LA + G Sbjct: 296 RLLLERHGERFINRRR--AYSRDELLKQVADSPERFSTNVVTRGLMQEHLFPTLAFIGGP 353 Query: 357 GELAYWAIPRLAFKVAGEQMPLILPRMSFTVVEGTLHKHMDKYQLVFGDVLLGLDSKRKE 416 GE++YWA R F++ G QMP++LPRMS T+VEG + +D L VL + + E Sbjct: 354 GEISYWAFYREVFELFGMQMPIVLPRMSITLVEGAQLRLLDSLGLSVERVLTDFAAWKTE 413 Query: 417 WLAAQDELGLERRFEDTKAAFLAMYEPLIEQLGSIQAGLLKLGANNKDKILDQITFLQAK 476 W Q LE++F + + +++Y PL+E++ S+ GL L N +L+Q++FL+ + Sbjct: 414 WSKNQAPHPLEQQFASARESMMSIYRPLVEEVVSLDGGLRGLAEKNSKLLLEQVSFLEER 473 Query: 477 AQDAMEKQNEAALRQWERIELSLMPLGKLQERVYNVMFYLNRYGPAWLDELMKIPADYSG 536 +++++++ + +RIE +L+P G LQER ++ + N+YG +D L+ P + G Sbjct: 474 LIRSLQQKDDVEHVRVQRIETALLPEGGLQERKHSFFPFANKYGLGLIDRLVDAPFAHDG 533 Query: 537 THRIIYM 543 TH++ Y+ Sbjct: 534 THQLYYL 540 >C2MPP9.1 C2MPP9_BACCE Putative uncharacterized protein Length = 552 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 173/487 (35%), Positives = 273/487 (56%), Gaps = 2/487 (0%) Query: 56 RAGIAECLRQYNLKWNPHPAVMDSLALLEQQGTLVITAGQQSGLFTGPLFVIYKAITTIQ 115 R + L +YN K A + ++ LE + T V+ AGQQ+GL TGPL+ I+K I+ +Q Sbjct: 65 RQDLVAHLLEYNTKLQAGEATIQNVKALEDEDTYVVIAGQQAGLLTGPLYTIHKIISVLQ 124 Query: 116 AAKEAAAQLGRPVVPLFWIAGEDHDWDEVNHTFILNRTGEVTKLKLDKAGDLRSSVSNIK 175 AKE LG VVP+FWIAGEDHD DE+NHTF+ + D+ ++S S + Sbjct: 125 LAKEKEESLGVKVVPVFWIAGEDHDMDEINHTFVTKNKKIKKTIFHDRNPK-KASASESE 183 Query: 176 VEEESWQQIIEQLDGLLQDSEFKPQVMEVIREXXXXXXXXXXXXXKLMGSLFGRFGLILL 235 + E ++ IE++ ++ F V+ I + L+ +F GLIL+ Sbjct: 184 LSLEDCRKWIEEIFKTYPETNFTKDVLRFIDDSLRKSNTYVDFFGHLIMKMFMNSGLILV 243 Query: 236 DSADPGLRRLEAPMFQTLIKHNDELEAAYQAAAGEITDSGYELQAAVAAGSANLFYIHEG 295 DS P LR+LE P F+ ++ E++ I + GY+ + + ++F + Sbjct: 244 DSHHPELRKLEVPFFKQIVSKYKEVQEGLHNQQEVIKELGYKPIIETKSNAVHIFMEIDN 303 Query: 296 TRLLLHKEEGRFTDRKGTVSFSREELLEQLEARPEQFSNNVLTRPLMQDYVLPVLATVLG 355 R+LL +G+F + GT SFS EEL+E++E PE+FSNNV+TRPLMQ+YV P LA + G Sbjct: 304 ERVLLEDNQGKFVGKDGTYSFSYEELIEEMERSPERFSNNVVTRPLMQEYVFPTLAFIGG 363 Query: 356 QGELAYWAIPRLAFKVAGEQMPLILPRMSFTVVEGTLHKHMDKYQLVFGDVLL-GLDSKR 414 GELAYW+ + F G +MP ++PR++ T +E + + QL D L +D R Sbjct: 364 PGELAYWSELQQVFHTIGFRMPPVVPRITITYIERDIATDLHDLQLQESDPFLNNVDKLR 423 Query: 415 KEWLAAQDELGLERRFEDTKAAFLAMYEPLIEQLGSIQAGLLKLGANNKDKILDQITFLQ 474 + WL+ Q E ++ RF + K + +++ L + + I GL N+ KI +QI L+ Sbjct: 424 ENWLSNQIEEPIDERFVEAKKEIIDIHKSLQQFVKKIDPGLSSFAGKNEFKINEQIELLE 483 Query: 475 AKAQDAMEKQNEAALRQWERIELSLMPLGKLQERVYNVMFYLNRYGPAWLDELMKIPADY 534 + +EK++E L ++ RI+ +L PLG QERV+NV +YLN++G ++D +M+ P + Sbjct: 484 RMLKRNVEKKHEVELNKFRRIQFALRPLGAPQERVWNVCYYLNQFGLDFVDRVMEKPFSW 543 Query: 535 SGTHRII 541 +G H +I Sbjct: 544 NGKHHVI 550 >B5V8I6.1 B5V8I6_BACCE Putative uncharacterized protein Length = 538 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 172/487 (35%), Positives = 272/487 (55%), Gaps = 2/487 (0%) Query: 56 RAGIAECLRQYNLKWNPHPAVMDSLALLEQQGTLVITAGQQSGLFTGPLFVIYKAITTIQ 115 R + L +YN K A + ++ LE + T V+ AGQQ+GL TGPL+ I+K I+ +Q Sbjct: 51 RQDLVAHLLEYNTKLQAGEATIQNVKALEDEDTYVVIAGQQAGLLTGPLYTIHKIISVLQ 110 Query: 116 AAKEAAAQLGRPVVPLFWIAGEDHDWDEVNHTFILNRTGEVTKLKLDKAGDLRSSVSNIK 175 AKE LG VVP+FWIAGEDHD DE+NHTF+ + D+ ++S S + Sbjct: 111 LAKEKEESLGVKVVPVFWIAGEDHDMDEINHTFVTKNKKIKKTIFHDRNPK-KASASESE 169 Query: 176 VEEESWQQIIEQLDGLLQDSEFKPQVMEVIREXXXXXXXXXXXXXKLMGSLFGRFGLILL 235 + E ++ IE++ ++ F V+ I + L+ +F GLIL+ Sbjct: 170 LSLEDCRKWIEEIFKTYPETNFTKDVLRFIDDSLRKSNTYVDFFGHLIMKMFMNSGLILV 229 Query: 236 DSADPGLRRLEAPMFQTLIKHNDELEAAYQAAAGEITDSGYELQAAVAAGSANLFYIHEG 295 DS P LR+LE P F+ ++ E++ I + GY+ + + ++F + Sbjct: 230 DSHHPELRKLEVPFFKQIVSKYKEVQEGLHNQQEVIKELGYKPIIETKSNAVHIFMEIDN 289 Query: 296 TRLLLHKEEGRFTDRKGTVSFSREELLEQLEARPEQFSNNVLTRPLMQDYVLPVLATVLG 355 R+LL + +F + GT SFS EEL+E++E PE+FSNNV+TRPLMQ+YV P LA + G Sbjct: 290 ERVLLEDNQRKFVGKDGTYSFSYEELIEEMERSPERFSNNVVTRPLMQEYVFPTLAFIGG 349 Query: 356 QGELAYWAIPRLAFKVAGEQMPLILPRMSFTVVEGTLHKHMDKYQLVFGDVLL-GLDSKR 414 GELAYW+ + F G +MP ++PR++ T +E + + QL D L +D R Sbjct: 350 PGELAYWSELQQVFHAIGFRMPPVVPRITITYIERDIATDLHDLQLQESDPFLNNVDKLR 409 Query: 415 KEWLAAQDELGLERRFEDTKAAFLAMYEPLIEQLGSIQAGLLKLGANNKDKILDQITFLQ 474 + WL+ Q E ++ RFE+ K + +++ L + + I GL N+ KI +QI L+ Sbjct: 410 ENWLSNQIEEPIDERFEEAKKEIIDIHKSLQQFVKKIDPGLSSFAGKNEFKINEQIELLE 469 Query: 475 AKAQDAMEKQNEAALRQWERIELSLMPLGKLQERVYNVMFYLNRYGPAWLDELMKIPADY 534 + +EK++E L ++ RI+ ++ PLG QERV+NV +YLN++G ++D +M+ P + Sbjct: 470 RMLKRNVEKKHEVELNKFRRIQFAIRPLGAPQERVWNVCYYLNQFGLDFVDRVMEKPFSW 529 Query: 535 SGTHRII 541 G H +I Sbjct: 530 DGKHHVI 536 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,112,954,781 Number of extensions: 125254525 Number of successful extensions: 318110 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 317606 Number of HSP's successfully gapped: 199 Length of query: 543 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 402 Effective length of database: 1,732,333,088 Effective search space: 696397901376 Effective search space used: 696397901376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)