BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0054.p (145 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG80.1 B3KG80_9BACI MraZ protein 237 2e-61 B1DBX2.1 B1DBX2_9BACL MraZ protein 223 5e-57 C0ZGB4.1 MRAZ_BREBN Protein mraZ 206 5e-52 A8W1P9.1 A8W1P9_9BACI Uncharacterized protein-like protein 193 4e-48 C1PSU0.1 C1PSU0_ALIAC MraZ protein 192 8e-48 >B3KG80.1 B3KG80_9BACI MraZ protein Length = 145 Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 109/145 (75%), Positives = 126/145 (86%) Query: 1 MFMGEYQHSIDDKGRIIIPAKFRDMLGTSFVATRGLDTCLFVYPMEEWGIMEQKLKSLSL 60 MFMGE+QHSIDDKGRIIIPAKFRD+LGTSF+ TRGLD CLFVYP +EW IMEQKLKSL L Sbjct: 1 MFMGEFQHSIDDKGRIIIPAKFRDLLGTSFIVTRGLDNCLFVYPKDEWAIMEQKLKSLPL 60 Query: 61 MKSDXXXXXXXXXXGATECVWDKQGRVNLPGNLRQYAKLDKDCVILGVSNRVEIWNKELW 120 MKSD GATEC WDKQGRVNLPGNLR++AKL+K+CV++GVS+RVEIW+KE W Sbjct: 61 MKSDARAFTRFFFSGATECEWDKQGRVNLPGNLREFAKLEKECVVIGVSSRVEIWSKEQW 120 Query: 121 EQYFEQSEETFNEIAEKLVDFNFDL 145 + Y++QSEE FN+IAEKLVDF+FDL Sbjct: 121 QNYYQQSEEAFNDIAEKLVDFDFDL 145 >B1DBX2.1 B1DBX2_9BACL MraZ protein Length = 145 Score = 223 bits (568), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 102/145 (70%), Positives = 119/145 (82%) Query: 1 MFMGEYQHSIDDKGRIIIPAKFRDMLGTSFVATRGLDTCLFVYPMEEWGIMEQKLKSLSL 60 MFMGEYQH+ID+KGRIIIP+KFR+ LGT F+ATRGLD CLFVYPM EW ++EQKLKSL L Sbjct: 1 MFMGEYQHTIDEKGRIIIPSKFRESLGTIFIATRGLDNCLFVYPMSEWSVLEQKLKSLPL 60 Query: 61 MKSDXXXXXXXXXXGATECVWDKQGRVNLPGNLRQYAKLDKDCVILGVSNRVEIWNKELW 120 MKSD GATEC DKQGRVN+P +LR+YAKLDKDC++LGVS RVEIW+K W Sbjct: 61 MKSDARAFTRFFFSGATECELDKQGRVNIPAHLREYAKLDKDCMVLGVSGRVEIWSKSTW 120 Query: 121 EQYFEQSEETFNEIAEKLVDFNFDL 145 E Y+ QSE+ FNEIAEKLVDF+F+ Sbjct: 121 EGYYAQSEQAFNEIAEKLVDFDFNF 145 >C0ZGB4.1 MRAZ_BREBN Protein mraZ Length = 143 Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 95/142 (66%), Positives = 112/142 (78%) Query: 1 MFMGEYQHSIDDKGRIIIPAKFRDMLGTSFVATRGLDTCLFVYPMEEWGIMEQKLKSLSL 60 MFMGEYQHSID+KGR+ IPAKFR+ LGTSFV TRGLD CLF YP +EW +E++LKSL Sbjct: 1 MFMGEYQHSIDEKGRLTIPAKFREGLGTSFVITRGLDQCLFAYPQDEWKQLEERLKSLPF 60 Query: 61 MKSDXXXXXXXXXXGATECVWDKQGRVNLPGNLRQYAKLDKDCVILGVSNRVEIWNKELW 120 K+D GATEC WDKQGRVN+P NLR++A + K+CVI+GVSNRVE+W+KE W Sbjct: 61 TKADARAFTRFFFSGATECEWDKQGRVNIPPNLREHAGMQKECVIIGVSNRVEVWSKERW 120 Query: 121 EQYFEQSEETFNEIAEKLVDFN 142 E YF QSE +F EIAEKLVDFN Sbjct: 121 EDYFAQSEGSFGEIAEKLVDFN 142 >A8W1P9.1 A8W1P9_9BACI Uncharacterized protein-like protein Length = 143 Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 85/142 (59%), Positives = 109/142 (76%) Query: 1 MFMGEYQHSIDDKGRIIIPAKFRDMLGTSFVATRGLDTCLFVYPMEEWGIMEQKLKSLSL 60 MFMGE+ H+IDDKGR+IIPA+FR+ LG F+ TRG+D CLFVYP +EW ++E KLKSL Sbjct: 1 MFMGEHHHNIDDKGRMIIPARFREELGAKFIVTRGMDKCLFVYPQKEWNVIEDKLKSLPF 60 Query: 61 MKSDXXXXXXXXXXGATECVWDKQGRVNLPGNLRQYAKLDKDCVILGVSNRVEIWNKELW 120 K D GATEC DKQGR N+P LR YA L+K+CV++GVSNRVEIW+K +W Sbjct: 61 TKKDARAFTRFFFSGATECELDKQGRANIPVTLRTYADLEKECVVIGVSNRVEIWSKSVW 120 Query: 121 EQYFEQSEETFNEIAEKLVDFN 142 + YFE+SEE+F++IAE +VDF+ Sbjct: 121 QTYFEESEESFSDIAESIVDFD 142 >C1PSU0.1 C1PSU0_ALIAC MraZ protein Length = 143 Score = 192 bits (488), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 87/143 (60%), Positives = 107/143 (74%) Query: 1 MFMGEYQHSIDDKGRIIIPAKFRDMLGTSFVATRGLDTCLFVYPMEEWGIMEQKLKSLSL 60 MFMGEY+HS+D KGR+ IPAKFRD LG SF+ TRGLD CLF YP++EW +EQKLKSL + Sbjct: 1 MFMGEYEHSLDSKGRLTIPAKFRDGLGDSFIVTRGLDQCLFAYPLDEWRALEQKLKSLPM 60 Query: 61 MKSDXXXXXXXXXXGATECVWDKQGRVNLPGNLRQYAKLDKDCVILGVSNRVEIWNKELW 120 +SD GA+EC DKQGR+ LP LR+YAKL+K+C ++GVSNRVEIWN +W Sbjct: 61 TRSDARAFVRFFFSGASECEVDKQGRILLPPKLREYAKLEKECTLIGVSNRVEIWNTSVW 120 Query: 121 EQYFEQSEETFNEIAEKLVDFNF 143 E Y +E +F EIAE LVDF+F Sbjct: 121 EHYSSDAERSFAEIAENLVDFSF 143 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 801,101,614 Number of extensions: 27393185 Number of successful extensions: 63978 Number of sequences better than 1.0e-05: 864 Number of HSP's gapped: 62951 Number of HSP's successfully gapped: 864 Length of query: 145 Length of database: 3,060,696,203 Length adjustment: 108 Effective length of query: 37 Effective length of database: 2,043,226,583 Effective search space: 75599383571 Effective search space used: 75599383571 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)