BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0049.p (631 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG84.1 B3KG84_9BACI Stage V sporulation protein D EC=2.4.1.129 1014 0.0 A4IM03.1 A4IM03_GEOTN Stage V sporulation protein D 759 0.0 B4BJE7.1 B4BJE7_9BACI Stage V sporulation protein D EC=2.4.1.129 759 0.0 Q03524.3 SP5D_BACSU Stage V sporulation protein D 756 0.0 C3J0B4.1 C3J0B4_9BACI Stage V sporulation protein D EC=2.4.1.129 755 0.0 >B3KG84.1 B3KG84_9BACI Stage V sporulation protein D EC=2.4.1.129 Length = 647 Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/620 (77%), Positives = 547/620 (88%) Query: 12 FGSLAVRLAYVQLSEGEKLSAKAESQWRRNIPFTAKRGEILDREGTALAYNISSPTVYAV 71 F +L +RLAYVQ+ +G +LSAKAE WRR+IPF A+RGEILDR GTAL NI++PT++A+ Sbjct: 23 FSALIIRLAYVQIGKGAELSAKAEDLWRRDIPFAAQRGEILDRNGTALVTNITTPTIWAI 82 Query: 72 PVQVKEKEKTAQTLAPLLGMSEMKLITXXXXXXXXXXXXPGGRKITMELAASIRDLQLPG 131 PVQ+K+ + TA+TLA L+ M + + PGGRKITMELA IRDL+LPG Sbjct: 83 PVQIKDPDHTAETLAGLISMDKADIKKIITKRSRLERINPGGRKITMELAQEIRDLKLPG 142 Query: 132 IVVAEDNKRFYPYGDLAAHILGFTGIDNQGITGVESIYDKLLQGSAGDISYLSDAGGRLM 191 IVVAEDNKR+YPYGDLAAHILGFTG +QG+TG+E+++D L+G G ISYLSDAGGR+M Sbjct: 143 IVVAEDNKRYYPYGDLAAHILGFTGAYSQGLTGLEAMHDDKLKGFEGGISYLSDAGGRIM 202 Query: 192 PGSSEKYSAPQDGLNLQLTIDKQIQSIMERELDQAMVKYQAQGSWAIAMNPKNGEILAMA 251 PGSSEKY P+DGLNL+LTIDK IQSIMERELDQAMVKYQA G+W+IAMNPK GEILAMA Sbjct: 203 PGSSEKYVEPRDGLNLELTIDKSIQSIMERELDQAMVKYQANGAWSIAMNPKTGEILAMA 262 Query: 252 SRPGYEPGAYKDYDAGVYNRNLPIWMTYEPGSTFKIITLAAALQEGKVDLQNDHFFDPGY 311 SRPGY P Y+++ A YNRNLPIWMTYEPGSTFKIITLAAAL+E KVDL+NDHFFD G Sbjct: 263 SRPGYSPANYQEFSAETYNRNLPIWMTYEPGSTFKIITLAAALEEDKVDLKNDHFFDSGA 322 Query: 312 IEVGGAKLRCWKKGGHGSQTFLQVVENSCNPGFVALGQRLGKDSLFKYIRDFGFGAKTGI 371 +EVGGA+LRCWKKGGHGSQTF++VV+NSCNPGFVALGQ+LGK+SLF+YIRDFGFGAKTGI Sbjct: 323 VEVGGARLRCWKKGGHGSQTFMEVVQNSCNPGFVALGQKLGKESLFQYIRDFGFGAKTGI 382 Query: 372 DLNGEAKGILFKPAQVGPVELATTAFGQGVSVTPIQQIAAVSAAINGGKLYTPHVAKAWI 431 DLNGE GILFK VGPVELATTAFGQGVSVTPIQQ+AAVSAAINGGKL+ PHVAKAW+ Sbjct: 383 DLNGEENGILFKLDNVGPVELATTAFGQGVSVTPIQQVAAVSAAINGGKLFKPHVAKAWV 442 Query: 432 HPDTGETVSEVKPEMVRQVISEETSKKVRAALESVVAKGTGRPAFIDGYRVGGKTGTAQK 491 +P+TGETV E+KPE+VRQVISEETSK+VR ALESVVAKGTGRPAFIDGYRVGGKTGTAQK Sbjct: 443 NPETGETVEEIKPELVRQVISEETSKQVREALESVVAKGTGRPAFIDGYRVGGKTGTAQK 502 Query: 492 VINGRYSPTEHIVSFIGFAPADDPQIVVYTAVDNPKGIQFGGVVAAPIVQNILEDSLHYL 551 VINGRYS TEHIVSFIGFAPADDP+IVVYTAVDNPKGIQFGGVVAAPIVQNILED+LHY+ Sbjct: 503 VINGRYSSTEHIVSFIGFAPADDPEIVVYTAVDNPKGIQFGGVVAAPIVQNILEDALHYM 562 Query: 552 KVPERKDQLPKTYKYGETPIVTVPDLTGATVQDIYEDLNMNFTLARSGTGNTVINQAPKA 611 VP RKDQL + YKYGETP VTVP+L GATVQD+YEDLNMNF LA+SGTGNTVI+QAPK Sbjct: 563 NVPPRKDQLAREYKYGETPTVTVPNLVGATVQDLYEDLNMNFMLAKSGTGNTVISQAPKP 622 Query: 612 GARVERGSTIRIYMGAENGK 631 G+RVERGSTIRIYMG + G+ Sbjct: 623 GSRVERGSTIRIYMGEDPGE 642 >A4IM03.1 A4IM03_GEOTN Stage V sporulation protein D Length = 644 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/622 (60%), Positives = 462/622 (74%), Gaps = 4/622 (0%) Query: 5 LLGLAVLFGSLAVRLAYVQLSEGEKLSAKAESQWRRNIPFTAKRGEILDREGTALAYNIS 64 L+G+ +F + +RL YVQ + L+ +A+ W RNIPF KRGEILDR G LA N+S Sbjct: 17 LIGI-FIFAIIDLRLGYVQFWLSDMLTERAKGLWGRNIPFEPKRGEILDRNGVPLATNMS 75 Query: 65 SPTVYAVPVQVKEKEKTAQTLAPLLGMSEMKLITXXXXXXXXXXXXPGGRKITMELAASI 124 +PTVY +P QVK + A+ L+ +LG S ++ I GRKI+ E AAS+ Sbjct: 76 APTVYVIPRQVKNPAEAAEKLSVVLGAS-VESIYKQITQKTSIVRLKEGRKISDEKAASV 134 Query: 125 RDLQLPGIVVAEDNKRFYPYGDLAAHILGFTGIDNQGITGVESIYDKLLQGSAGDISYLS 184 R L L GI +AED KR+YP+G +H+LGF+GIDNQG+TG+E YDK L G G + + S Sbjct: 135 RALDLDGIYIAEDTKRYYPFGSYLSHVLGFSGIDNQGLTGLELYYDKELSGERGSVQFYS 194 Query: 185 DAGGRLMPGSSEKYSAPQDGLNLQLTIDKQIQSIMERELDQAMVKYQAQGSWAIAMNPKN 244 DA GR MPG ++ Y+ P DGL+L LTID +IQ+I+ERELD A KY G AIAMNP Sbjct: 195 DAKGRRMPGIADDYTPPTDGLDLVLTIDSRIQTIIERELDIAEAKYNPDGIIAIAMNPNT 254 Query: 245 GEILAMASRPGYEPGAYKDYDAGVYNRNLPIWMTYEPGSTFKIITLAAALQEGKVDLQND 304 GEILAMASRP ++P Y+D +YNRNLPIW TYEPGSTFKIITLAAAL+EGKV+L D Sbjct: 255 GEILAMASRPTFDPANYRDVPPEIYNRNLPIWSTYEPGSTFKIITLAAALEEGKVNLLKD 314 Query: 305 HFFDPGYIEVGGAKLRCWKKGGHGSQTFLQVVENSCNPGFVALGQRLGKDSLFKYIRDFG 364 HFFDPGY +V GA LRCWKKGGHG QTFL+VV+NSCNPGFV LG+RLGK++LFKYI+ FG Sbjct: 315 HFFDPGYAKVAGATLRCWKKGGHGEQTFLEVVQNSCNPGFVELGERLGKETLFKYIKQFG 374 Query: 365 FGAKTGIDLNGEAKGILFKPAQVGPVELATTAFGQGVSVTPIQQIAAVSAAINGGKLYTP 424 FG KTGIDL GE GILF +VGPVELATTAFGQGVSVTPIQQ+AAVSAA+NGG LYTP Sbjct: 375 FGEKTGIDLQGEGTGILFDLKRVGPVELATTAFGQGVSVTPIQQVAAVSAAVNGGVLYTP 434 Query: 425 HVAKAWIHPDTGETVSEVKPEMVRQVISEETSKKVRAALESVVAKGTGRPAFIDGYRVGG 484 ++AK WI P+TGE V P+ R+VISEETSK+VR ALESVVA+GTG+ A+++GYRVGG Sbjct: 435 YIAKEWIDPETGEIVRRNTPKAKRRVISEETSKQVRYALESVVAQGTGKKAYVEGYRVGG 494 Query: 485 KTGTAQKVINGRYSPTEHIVSFIGFAPADDPQIVVYTAVDNPKG-IQFGGVVAAPIVQNI 543 KTGTAQK GRY HIVSFIGFAPADDPQ+VVY AVDNPKG +QFGG VAAPIV + Sbjct: 495 KTGTAQKAQGGRYLQNNHIVSFIGFAPADDPQLVVYVAVDNPKGTVQFGGTVAAPIVGKV 554 Query: 544 LEDSLHYLKVPERKDQLPKTYKYGETPIVTVPDLTGATVQDIYEDLNMNFTLARSGTGNT 603 +EDSL + V RKDQL K + E ++ VP+L G T +D+ E L + L SG G+ Sbjct: 555 MEDSLRVMNVKPRKDQLAKERDWNEPKVLEVPNLIGLTKKDLQEQL-FDLKLDVSGEGDV 613 Query: 604 VINQAPKAGARVERGSTIRIYM 625 V+ Q+P+ GA+V+ GSTIRIY+ Sbjct: 614 VVEQSPEPGAKVKEGSTIRIYL 635 >B4BJE7.1 B4BJE7_9BACI Stage V sporulation protein D EC=2.4.1.129 Length = 644 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/622 (60%), Positives = 462/622 (74%), Gaps = 4/622 (0%) Query: 5 LLGLAVLFGSLAVRLAYVQLSEGEKLSAKAESQWRRNIPFTAKRGEILDREGTALAYNIS 64 L+G+ +F + +RL YVQ + L+ +A+ W RNIPF KRGEILDR G LA N+S Sbjct: 17 LIGI-FIFAIIDLRLGYVQFWLSDMLTERAKGLWGRNIPFEPKRGEILDRNGVPLATNMS 75 Query: 65 SPTVYAVPVQVKEKEKTAQTLAPLLGMSEMKLITXXXXXXXXXXXXPGGRKITMELAASI 124 +PTVY +P QVK + A+ L+ +LG S ++ I GRKI+ E AAS+ Sbjct: 76 APTVYVIPRQVKNPAEAAEKLSVVLGAS-VESIYKQITQKTSIVRLKEGRKISDEKAASV 134 Query: 125 RDLQLPGIVVAEDNKRFYPYGDLAAHILGFTGIDNQGITGVESIYDKLLQGSAGDISYLS 184 R L L GI +AED KR+YP+G +H+LGF+GIDNQG+TG+E YDK L G G + + S Sbjct: 135 RALDLDGIYIAEDTKRYYPFGSYLSHVLGFSGIDNQGLTGLELYYDKELSGERGSVQFYS 194 Query: 185 DAGGRLMPGSSEKYSAPQDGLNLQLTIDKQIQSIMERELDQAMVKYQAQGSWAIAMNPKN 244 DA GR MPG ++ Y+ P DGL+L LTID +IQ+I+ERELD A KY G AIAMNP Sbjct: 195 DAKGRRMPGIADDYTPPTDGLDLVLTIDSRIQTIIERELDIAEAKYNPDGIIAIAMNPNT 254 Query: 245 GEILAMASRPGYEPGAYKDYDAGVYNRNLPIWMTYEPGSTFKIITLAAALQEGKVDLQND 304 GEILAMASRP ++P Y+D +YNRNLPIW TYEPGSTFKIITLAAAL+EGKV+L D Sbjct: 255 GEILAMASRPTFDPANYRDVPPEIYNRNLPIWSTYEPGSTFKIITLAAALEEGKVNLLKD 314 Query: 305 HFFDPGYIEVGGAKLRCWKKGGHGSQTFLQVVENSCNPGFVALGQRLGKDSLFKYIRDFG 364 HFFDPGY +V GA LRCWKKGGHG QTFL+VV+NSCNPGFV LG+RLGK++LFKYI+ FG Sbjct: 315 HFFDPGYAKVAGATLRCWKKGGHGEQTFLEVVQNSCNPGFVELGERLGKETLFKYIKQFG 374 Query: 365 FGAKTGIDLNGEAKGILFKPAQVGPVELATTAFGQGVSVTPIQQIAAVSAAINGGKLYTP 424 FG KTGIDL GE GILF +VGPVELATTAFGQGVSVTPIQQ+AAVSAA+NGG LYTP Sbjct: 375 FGEKTGIDLQGEGTGILFDLKRVGPVELATTAFGQGVSVTPIQQVAAVSAAVNGGVLYTP 434 Query: 425 HVAKAWIHPDTGETVSEVKPEMVRQVISEETSKKVRAALESVVAKGTGRPAFIDGYRVGG 484 ++AK WI P+TGE V P+ R+VISEETSK+VR ALESVVA+GTG+ A+++GYRVGG Sbjct: 435 YIAKEWIDPETGEIVRRNTPKAKRRVISEETSKQVRYALESVVAQGTGKKAYVEGYRVGG 494 Query: 485 KTGTAQKVINGRYSPTEHIVSFIGFAPADDPQIVVYTAVDNPKG-IQFGGVVAAPIVQNI 543 KTGTAQK GRY HIVSFIGFAPADDPQ+VVY AVDNPKG +QFGG VAAPIV + Sbjct: 495 KTGTAQKAQGGRYLQNNHIVSFIGFAPADDPQLVVYVAVDNPKGTVQFGGTVAAPIVGKV 554 Query: 544 LEDSLHYLKVPERKDQLPKTYKYGETPIVTVPDLTGATVQDIYEDLNMNFTLARSGTGNT 603 +EDSL + V RKDQL K + E ++ VP+L G T +D+ E L + L SG G+ Sbjct: 555 MEDSLRVMNVKPRKDQLAKERDWNEPKVLEVPNLIGLTKKDLQEQL-FDLKLDVSGEGDV 613 Query: 604 VINQAPKAGARVERGSTIRIYM 625 V+ Q+P+ GA+V+ GSTIRIY+ Sbjct: 614 VVEQSPEPGAKVKEGSTIRIYL 635 >Q03524.3 SP5D_BACSU Stage V sporulation protein D Length = 646 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/632 (57%), Positives = 466/632 (73%), Gaps = 2/632 (0%) Query: 1 MLWTLLGLAVLFGSLAVRLAYVQLSEGEKLSAKAESQWRRNIPFTAKRGEILDREGTALA 60 +L+ LL ++F + RL YVQ GEKL++ A+ W RN+PF +RGEILDR G LA Sbjct: 12 LLFVLLFGVIVFLIIDTRLGYVQFVMGEKLTSLAKDSWSRNLPFEPERGEILDRNGVKLA 71 Query: 61 YNISSPTVYAVPVQVKEKEKTAQTLAPLLGMSEMKLITXXXXXXXXXXXXPGGRKITMEL 120 N S+PTV+ VP QV+ KT++ LA +L MSE K+ P GRKI+ E Sbjct: 72 TNKSAPTVFVVPRQVQNPMKTSKQLAAVLNMSEEKVYKHVTKKASIEKITPEGRKISNEK 131 Query: 121 AASIRDLQLPGIVVAEDNKRFYPYGDLAAHILGFTGIDNQGITGVESIYDKLLQGSAGDI 180 A I+ L L G+ VAED+ R YP+G +H+LGF GIDNQG+ G+E+ YD L+G G + Sbjct: 132 AKEIKALDLKGVYVAEDSIRHYPFGSFLSHVLGFAGIDNQGLLGLEAYYDDDLKGEKGSV 191 Query: 181 SYLSDAGGRLMPGSSEKYSAPQDGLNLQLTIDKQIQSIMERELDQAMVKYQAQGSWAIAM 240 + +DA G+ MP ++ Y+ P+DGL+++LT+D ++Q+IMERELD A KY G A+AM Sbjct: 192 KFYTDAKGKKMPDEADDYTPPKDGLDMKLTVDSKVQTIMERELDNAEAKYHPDGMIAVAM 251 Query: 241 NPKNGEILAMASRPGYEPGAYKDYDAGVYNRNLPIWMTYEPGSTFKIITLAAALQEGKVD 300 NPKNGEIL M+SRP ++P Y+ D VYNRNLP+W TYEPGSTFKIITLAAAL+E KV+ Sbjct: 252 NPKNGEILGMSSRPDFDPADYQSVDPSVYNRNLPVWSTYEPGSTFKIITLAAALEEQKVN 311 Query: 301 LQNDHFFDPGYIEVGGAKLRCWKKGGHGSQTFLQVVENSCNPGFVALGQRLGKDSLFKYI 360 L+ D F+D G+ EV GA+LRCWK+GGHG QT+L+VV+NSCNPGFV LG+RLGK+ LFKYI Sbjct: 312 LKRDQFYDKGHAEVDGARLRCWKRGGHGLQTYLEVVQNSCNPGFVELGERLGKEKLFKYI 371 Query: 361 RDFGFGAKTGIDLNGEAKGILFKPAQVGPVELATTAFGQGVSVTPIQQIAAVSAAINGGK 420 +DFGFG KTGIDL GE GILF +VGPVE ATTAFGQGVSVTPIQQ+AAVSAA+NGG Sbjct: 372 KDFGFGQKTGIDLQGEGTGILFPLERVGPVEQATTAFGQGVSVTPIQQVAAVSAAVNGGT 431 Query: 421 LYTPHVAKAWIHPDTGETVSEVKPEMVRQVISEETSKKVRAALESVVAKGTGRPAFIDGY 480 LYTP++AK WI P T +TV + P +QVISEETSK++R ALESVVA+GTGR AF++GY Sbjct: 432 LYTPYIAKEWIDPVTKKTVKKQSPIAKKQVISEETSKQIRYALESVVAEGTGRNAFVEGY 491 Query: 481 RVGGKTGTAQKVINGRYSPTEHIVSFIGFAPADDPQIVVYTAVDNPKG-IQFGGVVAAPI 539 RVGGKTGTAQKV +G+Y HIVSFIGFAPADDP +VVY AVDNPKG IQFGG VAAPI Sbjct: 492 RVGGKTGTAQKVKDGKYLENNHIVSFIGFAPADDPSLVVYVAVDNPKGTIQFGGTVAAPI 551 Query: 540 VQNILEDSLHYLKVPERKDQLPKTYKYGETPIVTVPDLTGATVQDIYEDLNMNFTLARSG 599 V NI+ DSL L V RK+Q+ K Y++ +T + VP++ G +V D+ E L +N + SG Sbjct: 552 VGNIMRDSLPELGVKPRKNQIEKKYQWNDTKTIEVPNVVGMSVSDL-ESLLVNLNVDASG 610 Query: 600 TGNTVINQAPKAGARVERGSTIRIYMGAENGK 631 G+ ++ Q+P AG +V+ GS IR+Y+ E+ K Sbjct: 611 KGSKIVKQSPAAGTKVKEGSKIRVYLTEEDEK 642 >C3J0B4.1 C3J0B4_9BACI Stage V sporulation protein D EC=2.4.1.129 Length = 644 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/622 (60%), Positives = 461/622 (74%), Gaps = 4/622 (0%) Query: 5 LLGLAVLFGSLAVRLAYVQLSEGEKLSAKAESQWRRNIPFTAKRGEILDREGTALAYNIS 64 L+G+ ++F + +RL YVQ G+ L+ +A+ W RNIPF KRGEILDR G LA N+S Sbjct: 17 LIGI-LIFAIIDLRLGYVQFWLGDLLAERAKGLWGRNIPFEPKRGEILDRNGVPLATNMS 75 Query: 65 SPTVYAVPVQVKEKEKTAQTLAPLLGMSEMKLITXXXXXXXXXXXXPGGRKITMELAASI 124 +PTVY +P QVK + A+ LA +LG S ++ I GRKI+ E AA++ Sbjct: 76 APTVYVIPRQVKNPAEAAKKLAGVLGGS-VESIYKQITQKTSIVRLKEGRKISDEKAANV 134 Query: 125 RDLQLPGIVVAEDNKRFYPYGDLAAHILGFTGIDNQGITGVESIYDKLLQGSAGDISYLS 184 R L L G+ +AED KR+YP+G +H+LGFTGIDNQG+TG+E YDK L+G G + + S Sbjct: 135 RSLDLDGVYIAEDTKRYYPFGSYLSHVLGFTGIDNQGLTGLELYYDKELRGERGSVQFYS 194 Query: 185 DAGGRLMPGSSEKYSAPQDGLNLQLTIDKQIQSIMERELDQAMVKYQAQGSWAIAMNPKN 244 DA GR MP ++ Y+ P DGLNL LTID +IQ+I+ERELD A KY G AIAM+P Sbjct: 195 DAKGRRMPDIADDYTPPTDGLNLVLTIDSRIQTIIERELDIAEAKYNPDGIIAIAMDPNT 254 Query: 245 GEILAMASRPGYEPGAYKDYDAGVYNRNLPIWMTYEPGSTFKIITLAAALQEGKVDLQND 304 GEILAMASRP + P Y+ +YNRNLPIW TYEPGSTFKIITLAAAL+E KV+L D Sbjct: 255 GEILAMASRPTFNPADYRSVPPEIYNRNLPIWSTYEPGSTFKIITLAAALEEHKVNLLKD 314 Query: 305 HFFDPGYIEVGGAKLRCWKKGGHGSQTFLQVVENSCNPGFVALGQRLGKDSLFKYIRDFG 364 HFFDPGY +V GA LRCWKKGGHG QTFL+VV+NSCNPGFV LG+RLGK++LF+YI+ FG Sbjct: 315 HFFDPGYAKVAGATLRCWKKGGHGDQTFLEVVQNSCNPGFVELGERLGKETLFRYIKQFG 374 Query: 365 FGAKTGIDLNGEAKGILFKPAQVGPVELATTAFGQGVSVTPIQQIAAVSAAINGGKLYTP 424 FG KTGIDL GE GILF +VGPVELATTAFGQGVSVTPIQQ+AAVSAAINGG LYTP Sbjct: 375 FGEKTGIDLQGEGTGILFDLKRVGPVELATTAFGQGVSVTPIQQVAAVSAAINGGILYTP 434 Query: 425 HVAKAWIHPDTGETVSEVKPEMVRQVISEETSKKVRAALESVVAKGTGRPAFIDGYRVGG 484 ++AK W+ P+TGE V P+ R+VISEETSK+VR ALESVVA+GTG+ A+++GYRVGG Sbjct: 435 YIAKQWVDPETGEIVRRNTPKAKRRVISEETSKQVRYALESVVAQGTGKKAYVEGYRVGG 494 Query: 485 KTGTAQKVINGRYSPTEHIVSFIGFAPADDPQIVVYTAVDNPKG-IQFGGVVAAPIVQNI 543 KTGTAQK GRY P HIVSFIGFAPADDP++VVY AVDNPKG +QFGG VAAPIV I Sbjct: 495 KTGTAQKAQGGRYLPNNHIVSFIGFAPADDPKLVVYVAVDNPKGTVQFGGTVAAPIVGKI 554 Query: 544 LEDSLHYLKVPERKDQLPKTYKYGETPIVTVPDLTGATVQDIYEDLNMNFTLARSGTGNT 603 +EDSL L V RKDQL K + E ++ VP+L G T D+ E L + L SG G+ Sbjct: 555 MEDSLRTLGVKPRKDQLEKERDWNEPKVIEVPNLIGMTKNDLQEQL-FDLKLDVSGEGDV 613 Query: 604 VINQAPKAGARVERGSTIRIYM 625 V+ Q+PK GA+V+ GST+RIY+ Sbjct: 614 VVEQSPKPGAKVKEGSTVRIYL 635 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,902,853,578 Number of extensions: 173420521 Number of successful extensions: 428942 Number of sequences better than 1.0e-05: 5998 Number of HSP's gapped: 403804 Number of HSP's successfully gapped: 6112 Length of query: 631 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 489 Effective length of database: 1,722,912,073 Effective search space: 842504003697 Effective search space used: 842504003697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)