BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0040.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG93.1 B3KG93_9BACI Polypeptide-transport-associated domain pr... 281 6e-74 B1DMA7.1 B1DMA7_9BACL Polypeptide-transport-associated domain pr... 208 3e-52 C0ZGA2.1 C0ZGA2_BREBN Division initiation protein 104 6e-21 Q2B4P1.1 Q2B4P1_9BACI Cell-division initiation protein (Septum f... 93 3e-17 C2X1W8.1 C2X1W8_BACCE Cell division protein FtsQ 91 1e-16 >B3KG93.1 B3KG93_9BACI Polypeptide-transport-associated domain protein FtsQ-type Length = 251 Score = 281 bits (718), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 139/239 (58%), Positives = 173/239 (72%) Query: 1 MPKTRLPLLKEDKPSKKMSRKVTXXXXXXXXXXXXXXXXRSSLSRITEIQFEGNKYTTRN 60 M KT +P+LK+DKP K ++K+ RSS+S++TEI F GN + T Sbjct: 1 MSKTHMPVLKQDKPKPKTAKKIIWILLLLFAALLTILFFRSSVSQVTEIHFTGNTFNTNE 60 Query: 61 ELLAQSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVKSFPGTVTISIKEYPAVAYELD 120 +L QSGL +G Q+F V V++ L +L TI+ A VVKSFPG V+I + E+P VAYEL Sbjct: 61 QLTKQSGLHIGDQYFGVDPTLVQERLMELGTIKTAEVVKSFPGEVSIVVTEHPTVAYELS 120 Query: 121 EAGVLEAILSSGAAVAVNETGIAVEKPILTGWKEEDPYKAKLCQALAGIPNELTSDISEI 180 ++G L+AILSSG +V V +GIAVEKPILT W+ DP KAKL + LA IP LTSDISEI Sbjct: 121 DSGELQAILSSGTSVPVTASGIAVEKPILTNWEANDPNKAKLSKVLAEIPGSLTSDISEI 180 Query: 181 VPSPTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQVIETEEPGLIKMLEADSYVPF 239 +PSPTLSFPDRIK+YTRS FEVIT++SLL++KVEYLNQV E E PG+I MLEADSYVPF Sbjct: 181 MPSPTLSFPDRIKMYTRSKFEVITSVSLLRDKVEYLNQVTEIERPGVITMLEADSYVPF 239 >B1DMA7.1 B1DMA7_9BACL Polypeptide-transport-associated domain protein FtsQ-type Length = 256 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 154/235 (65%), Gaps = 1/235 (0%) Query: 6 LPLLKEDKPSKKMSRKVTXXXXXXXXXXXXXXXXRSSLSRITEIQFEGNKYTTRNELLAQ 65 +P+LKE + +K SRK+ SS+S+IT I EG +YT+++++ A Sbjct: 5 VPVLKEPERKRKGSRKLLAVLFLLFVILLSVLFFNSSISKITTITIEGAQYTSKSDIQAA 64 Query: 66 SGLAVGGQFFAVSKASVEDSL-KKLKTIQEAVVVKSFPGTVTISIKEYPAVAYELDEAGV 124 +G+ G +F VS + E + K LK I+EA V KSFPG V I++KE+P VA+EL G Sbjct: 65 AGITAGDAYFGVSGSQSEKRIIKALKPIEEASVSKSFPGNVKITVKEFPVVAFELSAGGE 124 Query: 125 LEAILSSGAAVAVNETGIAVEKPILTGWKEEDPYKAKLCQALAGIPNELTSDISEIVPSP 184 + AILS+G V+ ++KP+L+GWK +DP + +L + L I + SD+SEI+P P Sbjct: 125 MTAILSNGTNVSALSDEFLMDKPVLSGWKPDDPNREELTKQLGKISEKQLSDLSEIIPDP 184 Query: 185 TLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQVIETEEPGLIKMLEADSYVPF 239 + ++PDRIK+YTR+ FEV+TA+SLL K+E LN VIET+EPG I ML AD+YVPF Sbjct: 185 SKAYPDRIKIYTRTKFEVVTAVSLLPEKIEALNAVIETQEPGKITMLLADTYVPF 239 >C0ZGA2.1 C0ZGA2_BREBN Division initiation protein Length = 264 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 124/241 (51%), Gaps = 9/241 (3%) Query: 5 RLPLLKEDKPSKKMSRKVTXXXXXXXXXXXXXXXXRSSLSRITEIQFEGNKYTTRNELLA 64 R+P +K+ +P ++ +RK+ RS S++ EI+ GN T +++ Sbjct: 7 RIPQVKQQRPRRRGNRKLVFLLVLFFLTILIIVFIRSPYSKVQEIRVTGNDIYTTEQVIT 66 Query: 65 QSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVKSFPGTVTISIKEYPAVAYELDEAGV 124 +SGL QF V + SV ++LK L+ I++ V +SFPG +T+ I E VA+ + G Sbjct: 67 ESGLMKDMQFLNVWENSVRNNLKPLEAIKDVTVSRSFPGLITLHITEQKRVAFWSGQDGS 126 Query: 125 LEAILSSGAAV-AVNETGIAVEKPILTGWKEED--PYKAKLCQALAGIPNELTSDISEIV 181 A+L +G + VN V++P+++ W + P+ AK L+ PN L ++IS+I Sbjct: 127 RYALLDNGYVLKQVNFAKRVVDRPLISSWASPELLPHLAKSLSKLS--PNVL-AEISDIT 183 Query: 182 PSPTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQVIETEEP---GLIKMLEADSYVP 238 +PT+ RI LY R EV + I L + + +++ P G++ + E ++P Sbjct: 184 LTPTVYDKQRITLYMRDGNEVRSVIYKLDKMMNWYPAIMKQLPPDTKGVLSLFEQPWFIP 243 Query: 239 F 239 + Sbjct: 244 Y 244 >Q2B4P1.1 Q2B4P1_9BACI Cell-division initiation protein (Septum formation) Length = 265 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 6/235 (2%) Query: 5 RLPLLKEDKPSKKMSRKVTXXXXXXXXXXXXXXXXRSSLSRITEIQFEGNKYTTRNELLA 64 R+P LK+ + KK +R++ +S LSR+ EI GN+ T EL+A Sbjct: 12 RIPKLKQQR-RKKANRRLIVLLLLFFSMIVFVIYFQSPLSRVKEISISGNQTYTTKELIA 70 Query: 65 QSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVKSFPGTVTISIKEYPAVAYELDEAGV 124 SGL+ + V K ++E LK+L I A + P TV I + E+ +AY E Sbjct: 71 VSGLSKKTNIWKVDKGAIEGRLKELPEISGAEIKTRLPNTVDIKVAEHNRIAYIAKEKSF 130 Query: 125 LEAILSSGAAVAVNE-TGIAVEKPILTGWKEEDPYKAKLCQALAGIPNELTSDISEIVPS 183 L +L +G ++ E T I V P+L G+KE D ++ +L +P E+ + ISEI S Sbjct: 131 L-PVLENGMILSKQEITDIPVNAPLLLGFKEGDVL-LEMIDSLESLPKEVLNAISEIHYS 188 Query: 184 PTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLNQVIETEEPGL--IKMLEADSY 236 P + I LY FEV + K+ + +I +PG+ + LE SY Sbjct: 189 PKETDEYHITLYMNDGFEVSATLRSFSEKMAHYPSIISQLDPGVSGVIDLEVGSY 243 >C2X1W8.1 C2X1W8_BACCE Cell division protein FtsQ Length = 256 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 6/189 (3%) Query: 40 RSSLSRITEIQFEGNKYTTRNELLAQSGLAVGGQFFAVSKASVEDSLKKLKTIQEAVVVK 99 RS LS I +I GN Y T ++++ +SG+ +F V+ E++L K K I+ V K Sbjct: 49 RSPLSNIKKISVYGNHYMTDDQVMKESGVTYDTSYFRVTAHKAEENLTKRKEIKAVNVKK 108 Query: 100 SFPGTVTISIKEYPAVAYELDEAGVLEAILSSGAAVAVNETG-IAVEKPILTGWKEEDPY 158 FP + + IKEY + Y +++ G L+ +L +G + V G + V PI +KEE Sbjct: 109 RFPNKIDVHIKEYVTIGY-INKDGKLQPLLENGKTLDVLPNGKLPVAAPIFEPFKEE--- 164 Query: 159 KAK-LCQALAGIPNELTSDISEIVPSPTLSFPDRIKLYTRSHFEVITAISLLKNKVEYLN 217 K K L L + + ISEI SPT + D + LY +EV T I ++E Sbjct: 165 KMKGLIAELEKLTPTILRSISEIRYSPTNANEDHLTLYMNEGYEVSTTIQNFAKRMETYP 224 Query: 218 QVIETEEPG 226 +++T EPG Sbjct: 225 LILKTIEPG 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.130 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,186,284,235 Number of extensions: 42878440 Number of successful extensions: 91797 Number of sequences better than 1.0e-05: 163 Number of HSP's gapped: 91705 Number of HSP's successfully gapped: 163 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)