BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0039.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG94.1 B3KG94_9BACI Cell division protein FtsA 427 e-118 B1DMA8.1 B1DMA8_9BACL Cell division protein FtsA 389 e-106 C1PSS0.1 C1PSS0_ALIAC Cell division protein FtsA 313 1e-83 B7DRR1.1 B7DRR1_9BACL Cell division protein FtsA 313 1e-83 Q9K9T6.1 Q9K9T6_BACHD Cell-division protein (Septum formation) 308 3e-82 >B3KG94.1 B3KG94_9BACI Cell division protein FtsA Length = 427 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/261 (81%), Positives = 233/261 (89%) Query: 1 LSNNDIIVSLDIGTSKVRAIIGEVTNGTFNIIGVGSADSEGIRKGAIVDIDQTVQSIKSA 60 +SNNDIIVSLDIGTSKVRAIIGEV NGTFNIIGVGSADSEGIRKGAIVDIDQTVQSI+SA Sbjct: 1 MSNNDIIVSLDIGTSKVRAIIGEVNNGTFNIIGVGSADSEGIRKGAIVDIDQTVQSIRSA 60 Query: 61 VDHAEQMVGIQISEVYVGISGNHIGLQSSHGVVAVQNXXXXXXXXXXXXVIKAAEVIALP 120 VDHAE+MVGIQISEVYVGISGNHIGLQSSHGVVAV N V+KAAEV+ALP Sbjct: 61 VDHAERMVGIQISEVYVGISGNHIGLQSSHGVVAVSNEDREIGEEDIDRVLKAAEVVALP 120 Query: 121 PEREVIDVVAKQYIVDGLEGIQDPRGMIGVRLEVEATIITGAKTPIHNLLRCVEKSGLKV 180 P+RE+IDVVAKQ++VDGLEGI DPRGMIGVRLEVEATIITGAKT IHNLLRCVEKSGLKV Sbjct: 121 PDREIIDVVAKQFVVDGLEGISDPRGMIGVRLEVEATIITGAKTAIHNLLRCVEKSGLKV 180 Query: 181 KDLVLMXXXXXXXXXXKDEKSMGAVLVDIGAGSTTIAVYEEGSLCATSTIPIGGEFVTND 240 KDLVL+ KDEK+MG+VLVD+GAGSTT+AV+E GS+ ATST+P+GG+FVTND Sbjct: 181 KDLVLIPLGAGQLALSKDEKTMGSVLVDVGAGSTTLAVFEGGSIAATSTLPVGGDFVTND 240 Query: 241 IAYGLRTLTDQAEKVKLKYGC 261 IAYGLRTLTDQAEKVKLKYGC Sbjct: 241 IAYGLRTLTDQAEKVKLKYGC 261 >B1DMA8.1 B1DMA8_9BACL Cell division protein FtsA Length = 415 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/261 (72%), Positives = 222/261 (85%) Query: 1 LSNNDIIVSLDIGTSKVRAIIGEVTNGTFNIIGVGSADSEGIRKGAIVDIDQTVQSIKSA 60 +S+NDIIVSLDIGTSKVRAIIGEV NGT NIIGVGSADSEGIRKGAIVDIDQTVQSI+SA Sbjct: 1 MSSNDIIVSLDIGTSKVRAIIGEVNNGTINIIGVGSADSEGIRKGAIVDIDQTVQSIRSA 60 Query: 61 VDHAEQMVGIQISEVYVGISGNHIGLQSSHGVVAVQNXXXXXXXXXXXXVIKAAEVIALP 120 ++HAE+MVGIQIS+VYVGI GNHI LQ++ GVVAV N V++AA+V+ALP Sbjct: 61 IEHAERMVGIQISDVYVGIQGNHIALQTNRGVVAVSNEDREIGEEDIERVVQAAKVVALP 120 Query: 121 PEREVIDVVAKQYIVDGLEGIQDPRGMIGVRLEVEATIITGAKTPIHNLLRCVEKSGLKV 180 PERE+I++V KQ++VDGLEGI DPRGMIGVRLEVEATI+TGAKT IHNL+RCVEK+GL++ Sbjct: 121 PEREIINLVPKQFLVDGLEGISDPRGMIGVRLEVEATIVTGAKTAIHNLMRCVEKAGLRI 180 Query: 181 KDLVLMXXXXXXXXXXKDEKSMGAVLVDIGAGSTTIAVYEEGSLCATSTIPIGGEFVTND 240 ++LM KDEK++G VL DIGAGSTTI +YE+GSL A ST+PIGGE+VTND Sbjct: 181 SGVILMSLASGVMSLTKDEKTIGTVLTDIGAGSTTITIYEQGSLAAISTLPIGGEYVTND 240 Query: 241 IAYGLRTLTDQAEKVKLKYGC 261 IAYGLRT +DQAEK+KLKYGC Sbjct: 241 IAYGLRTQSDQAEKIKLKYGC 261 >C1PSS0.1 C1PSS0_ALIAC Cell division protein FtsA Length = 411 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 156/261 (59%), Positives = 195/261 (74%) Query: 1 LSNNDIIVSLDIGTSKVRAIIGEVTNGTFNIIGVGSADSEGIRKGAIVDIDQTVQSIKSA 60 ++ D IVSLDIGTSKVR IIGE T NIIGVGSA S+G+R GAIVDID+TV SI+ A Sbjct: 1 MAKEDYIVSLDIGTSKVRVIIGESTGNNLNIIGVGSASSQGLRHGAIVDIDKTVDSIREA 60 Query: 61 VDHAEQMVGIQISEVYVGISGNHIGLQSSHGVVAVQNXXXXXXXXXXXXVIKAAEVIALP 120 VDHAE+MVGI+I YVGISG HI L SSHGVVAV + V++ A V+ALP Sbjct: 61 VDHAERMVGIRIPSAYVGISGEHIQLHSSHGVVAVSSADREITDEDIERVLQQARVVALP 120 Query: 121 PEREVIDVVAKQYIVDGLEGIQDPRGMIGVRLEVEATIITGAKTPIHNLLRCVEKSGLKV 180 PEREVIDVVAK+++VDGL GI DPRGM+GVRLEV+A +ITG++T IHN++RCVE++GL+V Sbjct: 121 PEREVIDVVAKEFVVDGLRGIMDPRGMLGVRLEVDAYLITGSRTAIHNIVRCVERAGLEV 180 Query: 181 KDLVLMXXXXXXXXXXKDEKSMGAVLVDIGAGSTTIAVYEEGSLCATSTIPIGGEFVTND 240 +LVL +DE+ +G LVD+GAG T+++V+ G L TS IPIGG++VT D Sbjct: 181 ANLVLAPMAASQIALTQDERKLGVALVDVGAGVTSVSVFANGVLMGTSIIPIGGDYVTQD 240 Query: 241 IAYGLRTLTDQAEKVKLKYGC 261 IA GLRT T AE+VKL++ C Sbjct: 241 IAIGLRTNTVAAEQVKLRHAC 261 >B7DRR1.1 B7DRR1_9BACL Cell division protein FtsA Length = 411 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 156/261 (59%), Positives = 195/261 (74%) Query: 1 LSNNDIIVSLDIGTSKVRAIIGEVTNGTFNIIGVGSADSEGIRKGAIVDIDQTVQSIKSA 60 ++ D IVSLDIGTSKVR IIGE T NIIGVGSA S+G+R GAIVDID+TV SI+ A Sbjct: 1 MAKEDYIVSLDIGTSKVRVIIGESTGNNLNIIGVGSASSQGLRHGAIVDIDKTVDSIREA 60 Query: 61 VDHAEQMVGIQISEVYVGISGNHIGLQSSHGVVAVQNXXXXXXXXXXXXVIKAAEVIALP 120 VDHAE+MVGI+I YVGISG HI L SSHGVVAV + V++ A V+ALP Sbjct: 61 VDHAERMVGIRIPSAYVGISGEHIQLHSSHGVVAVSSADREITDEDIERVLQQARVVALP 120 Query: 121 PEREVIDVVAKQYIVDGLEGIQDPRGMIGVRLEVEATIITGAKTPIHNLLRCVEKSGLKV 180 PEREVIDVVAK+++VDGL GI DPRGM+GVRLEV+A +ITG++T IHN++RCVE++GL+V Sbjct: 121 PEREVIDVVAKEFVVDGLRGIMDPRGMLGVRLEVDAYLITGSRTAIHNIVRCVERAGLEV 180 Query: 181 KDLVLMXXXXXXXXXXKDEKSMGAVLVDIGAGSTTIAVYEEGSLCATSTIPIGGEFVTND 240 +LVL +DE+ +G LVD+GAG T+++V+ G L TS IPIGG++VT D Sbjct: 181 TNLVLAPMAASQIALTQDERKLGVALVDVGAGVTSVSVFANGVLMGTSIIPIGGDYVTQD 240 Query: 241 IAYGLRTLTDQAEKVKLKYGC 261 IA GLRT T AE+VKL++ C Sbjct: 241 IAIGLRTNTVAAEQVKLRHAC 261 >Q9K9T6.1 Q9K9T6_BACHD Cell-division protein (Septum formation) Length = 425 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 154/260 (59%), Positives = 200/260 (76%) Query: 1 LSNNDIIVSLDIGTSKVRAIIGEVTNGTFNIIGVGSADSEGIRKGAIVDIDQTVQSIKSA 60 ++NN+I VSLDIGTS VR IIGE+T+G+ NIIGVG+A SEGI+KG+IVDID+TV+SI+ A Sbjct: 1 MNNNEIYVSLDIGTSNVRIIIGEITDGSINIIGVGNAPSEGIKKGSIVDIDETVRSIRRA 60 Query: 61 VDHAEQMVGIQISEVYVGISGNHIGLQSSHGVVAVQNXXXXXXXXXXXXVIKAAEVIALP 120 V+ AE+MVG+ I +V VG++GNH+ LQ HGVVAV + VI AA+V+++P Sbjct: 61 VEQAERMVGLSIRQVIVGVNGNHVQLQPCHGVVAVSSPDREIGDEDIARVIDAAQVVSIP 120 Query: 121 PEREVIDVVAKQYIVDGLEGIQDPRGMIGVRLEVEATIITGAKTPIHNLLRCVEKSGLKV 180 PERE+IDV+ KQ+IVDGL+ I DPRGMIGVRLE+E TIITG+KT +HNLLRCVE++GL+V Sbjct: 121 PEREIIDVIPKQFIVDGLDEINDPRGMIGVRLEMEGTIITGSKTLLHNLLRCVERAGLEV 180 Query: 181 KDLVLMXXXXXXXXXXKDEKSMGAVLVDIGAGSTTIAVYEEGSLCATSTIPIGGEFVTND 240 D+ L KDEKS+G L+DIG GS TI+ +E+GSL TS IP+GG+ VTND Sbjct: 181 ADICLQALAAGSVAISKDEKSLGVCLIDIGGGSMTISCFEQGSLVDTSVIPVGGDHVTND 240 Query: 241 IAYGLRTLTDQAEKVKLKYG 260 IA GLR T++A K+K +G Sbjct: 241 IAVGLRISTEEAIKIKHTHG 260 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,479,483,352 Number of extensions: 53196020 Number of successful extensions: 137416 Number of sequences better than 1.0e-05: 1297 Number of HSP's gapped: 135786 Number of HSP's successfully gapped: 1318 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)