BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0038.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG94.1 B3KG94_9BACI Cell division protein FtsA                      101   2e-20
B1DMA8.1 B1DMA8_9BACL Cell division protein FtsA                       80   7e-14
C0ZG98.1 C0ZG98_BREBN Cell division protein FtsA                       68   2e-10
C5D8N0.1 C5D8N0_9BACI Cell division protein FtsA                       56   1e-06
Q9K9T6.1 Q9K9T6_BACHD Cell-division protein (Septum formation)         55   2e-06

>B3KG94.1 B3KG94_9BACI Cell division protein FtsA
          Length = 427

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 62/97 (63%), Gaps = 6/97 (6%)

Query: 1   MPGVLKAAQTELAASVRIAVPDYIGVRDPGFTGGVGILHNVVRSFXXXXXXXXXXXXXT- 59
           MPGVL+ AQ ELA SVRIAVPD+IGVRDPG+  GVGILHN +R+                
Sbjct: 331 MPGVLQVAQNELATSVRIAVPDFIGVRDPGYCSGVGILHNAIRNVRVRNTGGSNNSSGNS 390

Query: 60  ---VNRNKQN--AVPSQDTVKKPGLVERLKNMFSEFI 91
              VNR KQ      +Q+T +KPG +ERLK MFSEFI
Sbjct: 391 KKPVNRAKQQNPVAATQETSQKPGFIERLKKMFSEFI 427


>B1DMA8.1 B1DMA8_9BACL Cell division protein FtsA
          Length = 415

 Score = 80.1 bits (196), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 6/91 (6%)

Query: 1   MPGVLKAAQTELAASVRIAVPDYIGVRDPGFTGGVGILHNVVRSFXXXXXXXXXXXXXTV 60
           MPG L  AQ EL +SVRIA PDYIGVRDP ++ GVG++  V + +             + 
Sbjct: 331 MPGTLALAQAELESSVRIASPDYIGVRDPAYSSGVGMIQYVSK-YMGVRGAAASTGKKSA 389

Query: 61  NRNKQNAVPSQDTVKKPGLVERLKNMFSEFI 91
           +R       S     KPG+ ERLKNMFSEFI
Sbjct: 390 SRKSGTTASS-----KPGMFERLKNMFSEFI 415


>C0ZG98.1 C0ZG98_BREBN Cell division protein FtsA
          Length = 417

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 1   MPGVLKAAQTELAASVRIAVPDYIGVRDPGFTGGVGILHNVVRSFXXXXXXXXXXXXXTV 60
           MPG+L+ A+ EL A VRIA+PDYIGVRDP +T GVG++   ++               T 
Sbjct: 332 MPGMLELAKEELDAPVRIAIPDYIGVRDPAYTTGVGLIQYALQLMERRSIRVTPSFKGT- 390

Query: 61  NRNKQNAVPSQDTVKKPGLVERLKNMFSEFI 91
               Q    S    +  GL+E++KN FSEFI
Sbjct: 391 ----QKQTVSSKPKEGGGLMEKVKNWFSEFI 417


>C5D8N0.1 C5D8N0_9BACI Cell division protein FtsA
          Length = 424

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query: 1   MPGVLKAAQTELAASVRIAVPDYIGVRDPGFTGGVGIL 38
           MPG+L+ A   L +SVRIA+PDYIGVRDP +T GVG++
Sbjct: 331 MPGILELAHVVLGSSVRIAMPDYIGVRDPQYTTGVGLI 368


>Q9K9T6.1 Q9K9T6_BACHD Cell-division protein (Septum formation)
          Length = 425

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 1   MPGVLKAAQTELAASVRIAVPDYIGVRDPGFTGGVGILHNVVRSFXXXXXXXXXXXXXTV 60
           MPGVL+ A+  L  +VR+A+PDYIGVR+P +T GVG++    ++                
Sbjct: 331 MPGVLELAKETLGRNVRVAIPDYIGVREPQYTTGVGLIQFAYKNVKIQGKEVAAAVAEAG 390

Query: 61  NRNKQNAVPSQD---TVKKPGLVERLKNMFSEFI 91
              +Q     ++   T + PG+  ++KN F  F+
Sbjct: 391 VEQEQRPKKEKERSRTNEGPGVKSKVKNWFKVFL 424


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 461,980,192
Number of extensions: 12323197
Number of successful extensions: 19220
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 19217
Number of HSP's successfully gapped: 13
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)