BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0032.p
         (103 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG99.1 B3KG99_9BACI Sporulation protein, YlmC/YmxH family           148   2e-34
B1DKM8.1 B1DKM8_9BACL Sporulation protein, YlmC/YmxH family           126   5e-28
C0ZG93.1 C0ZG93_BREBN Putative uncharacterized protein                118   2e-25
B7DRR6.1 B7DRR6_9BACL Sporulation protein, YlmC/YmxH family            96   8e-19
C1PSR5.1 C1PSR5_ALIAC Sporulation protein, YlmC/YmxH family            96   1e-18

>B3KG99.1 B3KG99_9BACI Sporulation protein, YlmC/YmxH family
          Length = 110

 Score =  148 bits (373), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 90/104 (86%), Gaps = 6/104 (5%)

Query: 1   MKISDFQTKDVINIIDGKRLGQISDLELDLRRGVIDAIIIPGYTRFMGLFGGGTDLIIPW 60
           MKISDFQTKDVINIIDGKRLGQISDLELDLR+G I+AI++P Y +FMGLFGGG+DLIIPW
Sbjct: 12  MKISDFQTKDVINIIDGKRLGQISDLELDLRQGRIEAIVVPSYGKFMGLFGGGSDLIIPW 71

Query: 61  RNIVKIGADVVLVKMEEI-RMPQNQEEREPMYLERGDRSDRRTY 103
           RNIVKIG+DVVLVKMEE+ R P +QE  E  YL   DR DRR++
Sbjct: 72  RNIVKIGSDVVLVKMEELRRTPDDQEPVE--YL---DRPDRRSF 110


>B1DKM8.1 B1DKM8_9BACL Sporulation protein, YlmC/YmxH family
          Length = 92

 Score =  126 bits (317), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 75/78 (96%), Gaps = 1/78 (1%)

Query: 1  MKISDFQTKDVINIIDGKRLGQISDLELDLRRGVIDAIIIPGYTRFMGLFG-GGTDLIIP 59
          MKISDFQTKDVINI+DGK+LGQISDLELDLR+G IDAI+IP +TRF+G+FG GGT+++IP
Sbjct: 1  MKISDFQTKDVINIVDGKKLGQISDLELDLRQGRIDAIVIPQFTRFLGVFGNGGTEVVIP 60

Query: 60 WRNIVKIGADVVLVKMEE 77
          WRNIVKIGADVVLV++++
Sbjct: 61 WRNIVKIGADVVLVRLDD 78


>C0ZG93.1 C0ZG93_BREBN Putative uncharacterized protein
          Length = 92

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 67/77 (87%)

Query: 1  MKISDFQTKDVINIIDGKRLGQISDLELDLRRGVIDAIIIPGYTRFMGLFGGGTDLIIPW 60
          +KISDFQTK+V+NI+DGKRLGQISDLE+DLR G ++AI++PG  +F+G F  G D +IPW
Sbjct: 2  VKISDFQTKEVVNILDGKRLGQISDLEIDLRHGRVEAIVVPGPGKFLGFFSAGNDYVIPW 61

Query: 61 RNIVKIGADVVLVKMEE 77
          RNIVKIG DVVLV+MEE
Sbjct: 62 RNIVKIGKDVVLVRMEE 78


>B7DRR6.1 B7DRR6_9BACL Sporulation protein, YlmC/YmxH family
          Length = 98

 Score = 96.3 bits (238), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 60/81 (74%)

Query: 1  MKISDFQTKDVINIIDGKRLGQISDLELDLRRGVIDAIIIPGYTRFMGLFGGGTDLIIPW 60
          ++IS+ Q+KDV+N+ DGKRLG I DLE+DL  G+I AI+IPG ++F G+ GG  D IIPW
Sbjct: 2  VRISELQSKDVVNVEDGKRLGTIGDLEIDLDSGLIRAIVIPGQSKFFGMVGGSQDYIIPW 61

Query: 61 RNIVKIGADVVLVKMEEIRMP 81
            IVKIGADV+LV +     P
Sbjct: 62 NQIVKIGADVILVDLRPPEEP 82


>C1PSR5.1 C1PSR5_ALIAC Sporulation protein, YlmC/YmxH family
          Length = 98

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 60/81 (74%)

Query: 1  MKISDFQTKDVINIIDGKRLGQISDLELDLRRGVIDAIIIPGYTRFMGLFGGGTDLIIPW 60
          ++IS+ Q+KDV+N+ DGKRLG I DLE+DL  G+I AI+IPG ++F G+ GG  D IIPW
Sbjct: 2  VRISELQSKDVVNVEDGKRLGTIGDLEIDLDSGLIRAIVIPGQSKFFGMVGGSQDYIIPW 61

Query: 61 RNIVKIGADVVLVKMEEIRMP 81
            IVKIGADV+LV +     P
Sbjct: 62 NQIVKIGADVILVDLRSPGEP 82


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.146    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 626,216,702
Number of extensions: 25254362
Number of successful extensions: 49684
Number of sequences better than 1.0e-05: 190
Number of HSP's gapped: 49696
Number of HSP's successfully gapped: 190
Length of query: 103
Length of database: 3,060,696,203
Length adjustment: 71
Effective length of query: 32
Effective length of database: 2,391,804,138
Effective search space: 76537732416
Effective search space used: 76537732416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)