BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0031.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGA0.1 B3KGA0_9BACI Putative uncharacterized protein 363 1e-98 B1DKM7.1 B1DKM7_9BACL Putative uncharacterized protein 316 2e-84 C0ZG92.1 C0ZG92_BREBN Putative uncharacterized protein 252 3e-65 Q65JW3.1 Q65JW3_BACLD YlmD 233 1e-59 A5A677.1 A5A677_BACLD Putative uncharacterized protein ylmD 233 1e-59 >B3KGA0.1 B3KGA0_9BACI Putative uncharacterized protein Length = 284 Score = 363 bits (931), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 176/286 (61%), Positives = 212/286 (74%), Gaps = 5/286 (1%) Query: 1 MEPFM-QKNGAPMLLHLEPWRAEHAE-ITAGFTGRQGGIGKAPYDSFNCAFHVGDEPTDV 58 MEPF+ Q P L ++ W + A +TAGFTGR GG+ + PYDS N AFHVGDEP D+ Sbjct: 1 MEPFVSQDRQTPSLFVIQKWEGKSAAALTAGFTGRHGGVSRIPYDSLNLAFHVGDEPGDI 60 Query: 59 LGNRTLLAESLGFTLQDWTCGEQTHGNDIAVVKADDRGRGSLDRASAFQGTDGLLTNVPG 118 + NR +A +LGF+L+DWTCGEQ HG I VV DRGRGSLDRASA+Q TDGL+T+VPG Sbjct: 61 VENRKRVAAALGFSLEDWTCGEQVHGIRIGVVHDKDRGRGSLDRASAYQDTDGLVTDVPG 120 Query: 119 VLLTSFYADCVPLYFYDPLKKVVGLAHAGWKGTVAEIAAAMVARMETGYGSRPQDILAGI 178 VLLTSFYADCVPLYF+DP+ VGLAHAGWKGTV IA MV RM YGS P+++ A I Sbjct: 121 VLLTSFYADCVPLYFWDPVTGAVGLAHAGWKGTVGGIAEQMVVRMSAEYGSLPRNLHAAI 180 Query: 179 GPSIGDCCYEVDDYVMDHIRQLEDGLKAAAGSGPSQDLYRTSEADDRKSMLNLKEMNRRI 238 GPSIG+CCYEVDD VM+ +R+L G++ +G + + + K MLNLKE+NR I Sbjct: 181 GPSIGECCYEVDDRVMERVREL--GIEGFSGDKVTNSAFYIDKGHG-KYMLNLKEINRHI 237 Query: 239 MIKAGILPTHIECTSWCTSCNQDLFFSYRKENGVTGRMTSWIGIKE 284 MIKAGIL HIECTSWCTSCN D FFSYRK+ G TGRM SWIG+++ Sbjct: 238 MIKAGILAEHIECTSWCTSCNHDRFFSYRKDGGTTGRMASWIGMRK 283 >B1DKM7.1 B1DKM7_9BACL Putative uncharacterized protein Length = 284 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 147/274 (53%), Positives = 193/274 (70%), Gaps = 3/274 (1%) Query: 11 PMLLHLEPWRAEHAEITAGFTGRQGGIGKAPYDSFNCAFHVGDEPTDVLGNRTLLAESLG 70 P L L W+ ++ +TAGFTGR GG+ + P+ S N HVGD DV+ NR L+AE++G Sbjct: 13 PSLFLLSNWQEQNDRLTAGFTGRNGGVSEQPWTSLNVGLHVGDSDDDVVRNRQLIAETIG 72 Query: 71 FTLQDWTCGEQTHGNDIAVVKADDRGRGSLDRASAFQGTDGLLTNVPGVLLTSFYADCVP 130 + + WTCGEQ HG ++ V +RG+G L R SA TDGL+T++PGVLL SFYADCVP Sbjct: 73 WPFEAWTCGEQVHGCEVFQVTESERGKGRLSRDSAIADTDGLMTDIPGVLLASFYADCVP 132 Query: 131 LYFYDPLKKVVGLAHAGWKGTVAEIAAAMVARMETGYGSRPQDILAGIGPSIGDCCYEVD 190 LYFYD + V LAHAGWKGTV +IA+ + ME YG++P+++L IGPSI DCCYEVD Sbjct: 133 LYFYDQQHQAVALAHAGWKGTVQQIASKTIEAMERQYGTKPEELLCAIGPSISDCCYEVD 192 Query: 191 DYVMDHIRQLEDGLKAAAGSGPSQDLYRTSEADDRKSMLNLKEMNRRIMIKAGILPTHIE 250 +V+D ++ L +GL S S DL T ++ K+M+NLK++NR IM++AGILP HIE Sbjct: 193 GFVIDKLQPLVEGLADKLNS--SSDLMMTL-VENGKAMVNLKQINRHIMLEAGILPIHIE 249 Query: 251 CTSWCTSCNQDLFFSYRKENGVTGRMTSWIGIKE 284 + WCT C+ D FFS+RKE G TGRM SWIGI+E Sbjct: 250 LSEWCTGCSTDQFFSHRKEGGKTGRMASWIGIRE 283 >C0ZG92.1 C0ZG92_BREBN Putative uncharacterized protein Length = 276 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 133/287 (46%), Positives = 168/287 (58%), Gaps = 17/287 (5%) Query: 2 EPFMQKNGAPMLLHLEPWRAEHAEITAGFTGRQGGIGKAPYDSFNCAFHVGDEPTDVLGN 61 EPF++ +L L W + + AGFT R GG + PY SFN HVGDE +V+ N Sbjct: 3 EPFVRVEDKS-ILSLTEWEQQFPGLVAGFTIRSGGESEQPYGSFNMGLHVGDESANVVAN 61 Query: 62 RTLLAESLGFTLQDWTCGEQTHGNDIAVVKADDRGRGSLDRASAFQGTDGLLTNVPGVLL 121 R LAE +G + WTC +Q HGN + V A G+ SL+ TDGL T GV+L Sbjct: 62 RRKLAEQVGMSFSAWTCADQVHGNQVCQVTAGGAGKESLE--DVISSTDGLFTLEKGVML 119 Query: 122 TSFYADCVPLYFYDPLKKVVGLAHAGWKGTVAEIAAAMVARMETGYGSRPQDILAGIGPS 181 TSFYADCVPLYF P +GLAHAGWKGTV IA MV M Y ++P DI IGPS Sbjct: 120 TSFYADCVPLYFLHPQSGAIGLAHAGWKGTVGRIAEEMVKAMTKHYQAKPADIFVAIGPS 179 Query: 182 IGDCCYEVDDYVMDHIRQLEDGLKAAAGSGPSQDLYRTSEADDRKSMLNLKEMNRRIMIK 241 IG CCYEVD+ +M +R + A S DR ML+L+++N I+++ Sbjct: 180 IGGCCYEVDERIMTQVRTCAGDWEKAV----------ISSTGDRY-MLDLRQLNTAILLE 228 Query: 242 AGILPTHIECTSWCTSCNQDLFFSYRKENGV---TGRMTSWIGIKES 285 GI +I T+WCTSC DLFFS+RKE G+ TGRM S+IG KE+ Sbjct: 229 VGISSGNIFSTNWCTSCRTDLFFSHRKEAGIQGTTGRMASYIGWKEN 275 >Q65JW3.1 Q65JW3_BACLD YlmD Length = 287 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/279 (44%), Positives = 166/279 (59%), Gaps = 15/279 (5%) Query: 10 APMLLHLEPWRAEHAE----ITAGFTGRQGGIGKAPYDSFNCAFHVGDEPTDVLGNRTLL 65 AP +L +E W + AE +TAGFT + GG + P+ S N HV D V+ NR + Sbjct: 19 APSMLLIEEWN-QTAETGGAVTAGFTTKNGGESEPPFHSLNTGLHVQDHEQHVINNRKKV 77 Query: 66 AESLGFTLQDWTCGEQTHGNDIAVVKADDRGRGSLDRASAFQGTDGLLTNVPGVLLTSFY 125 A+ L L DW +QTH + I V DR G+ +A + TDGL T+ P + L + Sbjct: 78 ADILKTDLHDWVFADQTHEDRIHKVTDGDRASGAFRYDTALKATDGLYTDRPNLFLALCF 137 Query: 126 ADCVPLYFYDPLKKVVGLAHAGWKGTVAEIAAAMVARMETGYGSRPQDILAGIGPSIGDC 185 ADCVP+YFYDP++ +VG+AHAGWKGT IAA+MV GS P DI A IGP+IG C Sbjct: 138 ADCVPVYFYDPVRSLVGIAHAGWKGTALGIAASMVDMWIRREGSNPADIRAVIGPAIGSC 197 Query: 186 CYEVDDYVMDHIRQLEDGLKAAAGSGPSQDLYRTSEADDRKSMLNLKEMNRRIMIKAGIL 245 CY VDD+V+D IR L + A + YR L LKE+NR++++ AGI Sbjct: 198 CYTVDDHVIDKIRNLPLQQEDKAFLTIKEGEYR----------LELKEVNRQLLVHAGIP 247 Query: 246 PTHIECTSWCTSCNQDLFFSYRKENGVTGRMTSWIGIKE 284 IE +S CTSC + LFFS+R++ G TGRM S+IG+KE Sbjct: 248 NGQIEVSSLCTSCERSLFFSHRRDRGKTGRMMSFIGLKE 286 >A5A677.1 A5A677_BACLD Putative uncharacterized protein ylmD Length = 279 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/279 (44%), Positives = 166/279 (59%), Gaps = 15/279 (5%) Query: 10 APMLLHLEPWRAEHAE----ITAGFTGRQGGIGKAPYDSFNCAFHVGDEPTDVLGNRTLL 65 AP +L +E W + AE +TAGFT + GG + P+ S N HV D V+ NR + Sbjct: 11 APSMLLIEEWN-QTAETGGAVTAGFTTKNGGESEPPFHSLNTGLHVQDHEQHVINNRKKV 69 Query: 66 AESLGFTLQDWTCGEQTHGNDIAVVKADDRGRGSLDRASAFQGTDGLLTNVPGVLLTSFY 125 A+ L L DW +QTH + I V DR G+ +A + TDGL T+ P + L + Sbjct: 70 ADILKTDLHDWVFADQTHEDRIHKVTDGDRASGAFRYDTALKATDGLYTDRPNLFLALCF 129 Query: 126 ADCVPLYFYDPLKKVVGLAHAGWKGTVAEIAAAMVARMETGYGSRPQDILAGIGPSIGDC 185 ADCVP+YFYDP++ +VG+AHAGWKGT IAA+MV GS P DI A IGP+IG C Sbjct: 130 ADCVPVYFYDPVRSLVGIAHAGWKGTALGIAASMVDMWIRREGSNPADIRAVIGPAIGSC 189 Query: 186 CYEVDDYVMDHIRQLEDGLKAAAGSGPSQDLYRTSEADDRKSMLNLKEMNRRIMIKAGIL 245 CY VDD+V+D IR L + A + YR L LKE+NR++++ AGI Sbjct: 190 CYTVDDHVIDKIRNLPLQQEDKAFLTIKEGEYR----------LELKEVNRQLLVHAGIP 239 Query: 246 PTHIECTSWCTSCNQDLFFSYRKENGVTGRMTSWIGIKE 284 IE +S CTSC + LFFS+R++ G TGRM S+IG+KE Sbjct: 240 NGQIEVSSLCTSCERSLFFSHRRDRGKTGRMMSFIGLKE 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,836,790,161 Number of extensions: 77685820 Number of successful extensions: 166002 Number of sequences better than 1.0e-05: 1191 Number of HSP's gapped: 163704 Number of HSP's successfully gapped: 1191 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)