BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0030.p (230 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGA1.1 B3KGA1_9BACI Alanine racemase domain protein 330 5e-89 B1DKM6.1 B1DKM6_9BACL Alanine racemase domain protein 288 3e-76 C0ZG91.1 C0ZG91_BREBN Putative uncharacterized protein 258 3e-67 Q5WFH8.1 Q5WFH8_BACSK Putative uncharacterized protein 244 5e-63 C1P6Y5.1 C1P6Y5_BACCO Alanine racemase domain protein 231 3e-59 >B3KGA1.1 B3KGA1_9BACI Alanine racemase domain protein Length = 240 Score = 330 bits (846), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 158/228 (69%), Positives = 186/228 (81%) Query: 1 LTLQERIAGVEERVARACAASGRDVADVKVIAVTKYVSLETVSAVLEAGLEDIAESRWQD 60 L+L+ERI VE+R+ ACA SGRD DV +IAVTKYVSL+ ++VL+ GL I E+RWQD Sbjct: 12 LSLKERIDQVEQRITEACARSGRDRNDVNMIAVTKYVSLDMTASVLDHGLLHIGENRWQD 71 Query: 61 AEPKWNALGHKGTWHFIGHLQTNKVKDVIGKFQYIHSLDRLSLARELHKKADAAGITVNV 120 A+ KWNALG++GTWHFIGHLQTNKV+DVI KFQYIHSLDRLSLA EL K+A A + V+ Sbjct: 72 AQAKWNALGNRGTWHFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNLQVSA 131 Query: 121 FLQVNISGEDTKFGLAPGDVPGFLHEIASLHRIKVIGLMTMAPYEAEPEQTRPVFRGLRE 180 +QVNISGE++K+GL P FL EI SL +KV GLMTMAPYE+ EQTRPVFRGLR+ Sbjct: 132 LMQVNISGEESKYGLPPEQAAEFLKEINSLSHVKVTGLMTMAPYESSAEQTRPVFRGLRQ 191 Query: 181 LRDKLNLLALTPEPIQELSMGMSNDFEVAIEEGATWVRLGTVLVGHEE 228 LRD+LN ALT EP+ ELSMGMSNDFEVAIEEGATWVRLG++LVG EE Sbjct: 192 LRDELNEQALTAEPLTELSMGMSNDFEVAIEEGATWVRLGSILVGKEE 239 >B1DKM6.1 B1DKM6_9BACL Alanine racemase domain protein Length = 242 Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 141/233 (60%), Positives = 170/233 (72%), Gaps = 8/233 (3%) Query: 3 LQERIAGVEERVARACAASGRDVADVKVIAVTKYVSLETVSAVLEAGLEDIAESRWQDAE 62 LQERI VE RVA AC SGR +V +IAVTKYVSLET A + GL + E+RWQDA+ Sbjct: 9 LQERIEEVERRVAAACKRSGRSREEVNIIAVTKYVSLETAQAAHQLGLRHLGENRWQDAK 68 Query: 63 PKWNAL--------GHKGTWHFIGHLQTNKVKDVIGKFQYIHSLDRLSLARELHKKADAA 114 KW A+ G + WHFIG LQTNKVKDVIGKF YIHSLDRLSLA+ + K+A Sbjct: 69 EKWEAISDSVTGENGGQAVWHFIGSLQTNKVKDVIGKFTYIHSLDRLSLAQAIDKRASQL 128 Query: 115 GITVNVFLQVNISGEDTKFGLAPGDVPGFLHEIASLHRIKVIGLMTMAPYEAEPEQTRPV 174 G+TV +QVN+SGE +K GL P +P FL E+ L +++IGLMTMAPYE E E+TRP+ Sbjct: 129 GLTVPCLVQVNVSGEQSKHGLDPEQLPAFLAELKELSSLRIIGLMTMAPYETEAEETRPI 188 Query: 175 FRGLRELRDKLNLLALTPEPIQELSMGMSNDFEVAIEEGATWVRLGTVLVGHE 227 FR LR+LRD++N A+ E + ELSMGMS DFEVAIEEGATW+RLGT+LVG E Sbjct: 189 FRSLRKLRDEMNERAILAESMTELSMGMSGDFEVAIEEGATWIRLGTILVGKE 241 >C0ZG91.1 C0ZG91_BREBN Putative uncharacterized protein Length = 232 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 124/225 (55%), Positives = 164/225 (72%) Query: 3 LQERIAGVEERVARACAASGRDVADVKVIAVTKYVSLETVSAVLEAGLEDIAESRWQDAE 62 L+ER+ +E R+ AC + R +VK+IAVTKYV + + +L G+E+I E+R QDA Sbjct: 8 LKERLQSIEARIQAACDRANRKREEVKIIAVTKYVDADAIGDLLAVGVENIGENRVQDAL 67 Query: 63 PKWNALGHKGTWHFIGHLQTNKVKDVIGKFQYIHSLDRLSLARELHKKADAAGITVNVFL 122 PK G+KG WHFIGHLQTNK K+V+GKF YIHSLDRLSLA+EL+++ +A V FL Sbjct: 68 PKHELHGNKGIWHFIGHLQTNKAKEVVGKFPYIHSLDRLSLAQELNRRGEALDHVVKCFL 127 Query: 123 QVNISGEDTKFGLAPGDVPGFLHEIASLHRIKVIGLMTMAPYEAEPEQTRPVFRGLRELR 182 Q+NISGE+TKFGL+P DV FL E +++ I ++GLMTMAP E+ R VFRGL E + Sbjct: 128 QINISGEETKFGLSPNDVLAFLRETSNMKHISIVGLMTMAPVVENQEEARQVFRGLYEWK 187 Query: 183 DKLNLLALTPEPIQELSMGMSNDFEVAIEEGATWVRLGTVLVGHE 227 ++N +A ++ELSMGMS+DFEVAIEEGAT++RLG+VLV E Sbjct: 188 QRINEMAFPHAQVEELSMGMSSDFEVAIEEGATYIRLGSVLVKPE 232 >Q5WFH8.1 Q5WFH8_BACSK Putative uncharacterized protein Length = 229 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 119/229 (51%), Positives = 165/229 (72%), Gaps = 2/229 (0%) Query: 1 LTLQERIAGVEERVARACAASGRDVADVKVIAVTKYVSLETVSAVLEAGLEDIAESRWQD 60 + + E +A ++ RV +AC SGR + DV++IAVTKYVS+ T +EAG+ DI E+R + Sbjct: 3 VNVAENVANIKMRVRQACERSGRAIDDVRIIAVTKYVSVATAKQAVEAGIADIGENRIEG 62 Query: 61 AEPKWNALGHKGTWHFIGHLQTNKVKDVIGKFQYIHSLDRLSLARELHKKADAAGITVNV 120 A K A+G HF+G LQ+ KVK+++ IHSLDRLSLA+E+ K+ + G T++ Sbjct: 63 ALEKAAAIGQ-ARLHFVGSLQSRKVKNIVNVVSCIHSLDRLSLAKEIDKRLEP-GKTIDC 120 Query: 121 FLQVNISGEDTKFGLAPGDVPGFLHEIASLHRIKVIGLMTMAPYEAEPEQTRPVFRGLRE 180 F+QVN+SGE +K GL+P +V F++E+A+ ++VIGLMTMAP+E + E+TRP+F LRE Sbjct: 121 FVQVNVSGEQSKNGLSPDEVRPFINELAAYPAVRVIGLMTMAPFEQDAERTRPIFSKLRE 180 Query: 181 LRDKLNLLALTPEPIQELSMGMSNDFEVAIEEGATWVRLGTVLVGHEEG 229 LRD++ L+ P ELSMGMSNDFEVAIEEGAT++RLGT LVG EE Sbjct: 181 LRDQIKADKLSSAPCTELSMGMSNDFEVAIEEGATFIRLGTSLVGKEES 229 >C1P6Y5.1 C1P6Y5_BACCO Alanine racemase domain protein Length = 225 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 111/225 (49%), Positives = 154/225 (68%) Query: 1 LTLQERIAGVEERVARACAASGRDVADVKVIAVTKYVSLETVSAVLEAGLEDIAESRWQD 60 + + E +A + E++ +AC +GR DV++IAVTKYV+ E LEAG++ + E+R Sbjct: 1 MKVSENLARINEKIEKACQRAGRSRGDVEIIAVTKYVTTERAKEALEAGIQHLGENRDDG 60 Query: 61 AEPKWNALGHKGTWHFIGHLQTNKVKDVIGKFQYIHSLDRLSLARELHKKADAAGITVNV 120 K+ ALG++ WHFIG LQT KVK++I K YIHSLDRLSLA E+ K+A +N Sbjct: 61 LLKKYEALGNRPVWHFIGTLQTRKVKNIIDKVSYIHSLDRLSLAEEIEKRAAKLDKEINC 120 Query: 121 FLQVNISGEDTKFGLAPGDVPGFLHEIASLHRIKVIGLMTMAPYEAEPEQTRPVFRGLRE 180 F+QVN+SGE++K G+APG V F+ ++ I+V GLMTMAP + + R FRGL++ Sbjct: 121 FIQVNVSGEESKHGMAPGQVVDFVRKLKDFPHIRVAGLMTMAPLTEDEDVIRRTFRGLKQ 180 Query: 181 LRDKLNLLALTPEPIQELSMGMSNDFEVAIEEGATWVRLGTVLVG 225 L+ + L L P +ELSMGMSNDFE+A+EEGAT+VR+GT LVG Sbjct: 181 LQQDIESLHLDYAPCRELSMGMSNDFEIAVEEGATFVRIGTALVG 225 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,338,423,739 Number of extensions: 53170640 Number of successful extensions: 182360 Number of sequences better than 1.0e-05: 1552 Number of HSP's gapped: 179715 Number of HSP's successfully gapped: 1553 Length of query: 230 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 99 Effective length of database: 1,826,543,238 Effective search space: 180827780562 Effective search space used: 180827780562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)