BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0029.p (147 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGA2.1 B3KGA2_9BACI Putative uncharacterized protein 222 9e-57 B1DKM5.1 B1DKM5_9BACL Putative uncharacterized protein 188 2e-46 A7Z4F9.1 SEPF_BACA2 Cell division protein sepF 139 6e-32 Q65JW1.1 SEPF_BACLD Cell division protein sepF 139 1e-31 B4AE82.1 B4AE82_BACPU YlmF 138 1e-31 >B3KGA2.1 B3KGA2_9BACI Putative uncharacterized protein Length = 148 Score = 222 bits (565), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 108/148 (72%), Positives = 122/148 (82%), Gaps = 1/148 (0%) Query: 1 MGVMNRFMSFLGLXXXXXXXXXXXXSRDEEEYEPAPVETRKNQRA-NVVSIHSQKNVKVV 59 MGVMNRFM+FLGL + EE E P + RKNQ++ N+VSIHSQKNVKVV Sbjct: 1 MGVMNRFMNFLGLQEEEEVVEREVLASQEEPVEATPFDHRKNQKSGNIVSIHSQKNVKVV 60 Query: 60 LYEPRSYEEAQEIADHLRAHRTVVINLQRVRNDQAMRIIDFLSGTVYALGGGISKIGGNI 119 L EPRSY+EAQEIADHLR+ RTVV+NLQRVRNDQA+RIIDFLSGTVYAL GGISK+GGNI Sbjct: 61 LVEPRSYDEAQEIADHLRSFRTVVVNLQRVRNDQALRIIDFLSGTVYALSGGISKVGGNI 120 Query: 120 FMCTPDTVEIQGSISEILGDDQDYNRMR 147 F+CTPDTVEIQGSISEIL D+ +YNRMR Sbjct: 121 FLCTPDTVEIQGSISEILADEHEYNRMR 148 >B1DKM5.1 B1DKM5_9BACL Putative uncharacterized protein Length = 155 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/155 (59%), Positives = 117/155 (75%), Gaps = 8/155 (5%) Query: 1 MGVMNRFMSFLGLXXXXXXXXXXXXSR----DEEEYEPAPVETRKNQRA----NVVSIHS 52 M VMNRFM+FLGL ++ +E E E +P E R+N + N+VSIHS Sbjct: 1 MSVMNRFMNFLGLQEEEEVVERERVTQQPQAEEPEVETSPFEARRNSKGGNNNNIVSIHS 60 Query: 53 QKNVKVVLYEPRSYEEAQEIADHLRAHRTVVINLQRVRNDQAMRIIDFLSGTVYALGGGI 112 QK+V+VVL EPRSY+EAQ+IADHLR+ R V++NLQRVR D A+RI+DFLSGTVYAL G I Sbjct: 61 QKSVRVVLSEPRSYDEAQDIADHLRSRRAVIVNLQRVRTDLAVRIVDFLSGTVYALNGHI 120 Query: 113 SKIGGNIFMCTPDTVEIQGSISEILGDDQDYNRMR 147 SK+G NIF+CTPD+VEIQG+I+E+L +D DYN+MR Sbjct: 121 SKLGPNIFLCTPDSVEIQGAITEMLAEDIDYNKMR 155 >A7Z4F9.1 SEPF_BACA2 Cell division protein sepF Length = 152 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 7/148 (4%) Query: 1 MGVMNRFMSFLGLXXXXXXXXXXXXSRD-----EEEYEPAPVETRKNQ-RANVVSIHS-Q 53 M + N+ +F + +D E++ + P +K Q + NVVS+ S Q Sbjct: 1 MSMKNKLKNFFSMDEEEYEYEYIETEQDHPEEHEQQKDKQPAYAQKPQGKQNVVSLQSVQ 60 Query: 54 KNVKVVLYEPRSYEEAQEIADHLRAHRTVVINLQRVRNDQAMRIIDFLSGTVYALGGGIS 113 K+ KVVL EPR Y EAQEIADHL+ R VV+NLQR+++DQA RI+DFLSGTVYA+GG I Sbjct: 61 KSSKVVLSEPRVYAEAQEIADHLKNRRAVVVNLQRIQHDQAKRIVDFLSGTVYAIGGDIQ 120 Query: 114 KIGGNIFMCTPDTVEIQGSISEILGDDQ 141 +IG +IF+CTPD V++ G+ISE++ +D+ Sbjct: 121 RIGSDIFLCTPDNVDVSGTISELINEDE 148 >Q65JW1.1 SEPF_BACLD Cell division protein sepF Length = 150 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 99/146 (67%), Gaps = 6/146 (4%) Query: 1 MGVMNRFMSFLGLXXXXXXXXXXXXSRDE--EEYEP---APVETRKNQRANVVSIHS-QK 54 M + N+F +F L R+E EE+E +++ + NVVS+ S QK Sbjct: 1 MSLKNKFKNFFSLDDEEYEYEYIETDREEIPEEHESKDRTAYQSKAAGKQNVVSLQSVQK 60 Query: 55 NVKVVLYEPRSYEEAQEIADHLRAHRTVVINLQRVRNDQAMRIIDFLSGTVYALGGGISK 114 + KVVL EPR Y EAQEIADH++ R VV+NLQR+++DQA RI+DFLSGTVYALGG I + Sbjct: 61 SSKVVLSEPRVYAEAQEIADHIKNRRAVVVNLQRIQHDQAKRIVDFLSGTVYALGGDIQR 120 Query: 115 IGGNIFMCTPDTVEIQGSISEILGDD 140 IG +IF+CTP+ V++ G+ISE++ ++ Sbjct: 121 IGADIFLCTPENVDVSGTISELIEEE 146 >B4AE82.1 B4AE82_BACPU YlmF Length = 152 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 98/152 (64%), Gaps = 15/152 (9%) Query: 1 MGVMNRFMSFLGLXXXXXXX----------XXXXXSRDEEEYEPAPVETRKNQRANVVSI 50 M + N+F SF L ++D+ ++ P + + NVVS+ Sbjct: 1 MSIKNKFKSFFTLDDEEYEYEYIDEEREPVQEEKGTKDKAAFQERP----QTGKQNVVSL 56 Query: 51 HS-QKNVKVVLYEPRSYEEAQEIADHLRAHRTVVINLQRVRNDQAMRIIDFLSGTVYALG 109 S QK+ KVVL EPR Y EAQEIADH++ R VV+NLQR+++DQA RIIDFLSGTVYA+G Sbjct: 57 QSVQKSSKVVLSEPRVYAEAQEIADHIKNRRAVVVNLQRIQHDQAKRIIDFLSGTVYAIG 116 Query: 110 GGISKIGGNIFMCTPDTVEIQGSISEILGDDQ 141 G I +IG NIF+CTPD V++ G+ISE+L +++ Sbjct: 117 GDIQRIGSNIFLCTPDNVDVSGTISELLTEEE 148 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 757,028,424 Number of extensions: 26818505 Number of successful extensions: 83398 Number of sequences better than 1.0e-05: 503 Number of HSP's gapped: 83369 Number of HSP's successfully gapped: 503 Length of query: 147 Length of database: 3,060,696,203 Length adjustment: 110 Effective length of query: 37 Effective length of database: 2,024,384,553 Effective search space: 74902228461 Effective search space used: 74902228461 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)