BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0028.p
         (64 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGA3.1 B3KGA3_9BACI Putative uncharacterized protein                 97   6e-19
B1DKM4.1 B1DKM4_9BACL Putative uncharacterized protein                 77   7e-13
Q9K9U7.1 Q9K9U7_BACHD BH2548 protein                                   76   8e-13
Q65JW0.1 Q65JW0_BACLD YlmG                                             76   1e-12
Q2B059.1 Q2B059_9BACI Integral membrane protein                        75   2e-12

>B3KGA3.1 B3KGA3_9BACI Putative uncharacterized protein
          Length = 89

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 53/63 (84%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGLQYIV 60
          MSWLPNVR+SF+GELLGKLVEPYL PFRR IP + G IDISPIIALFVL+ A+ G+  I+
Sbjct: 26 MSWLPNVRESFVGELLGKLVEPYLAPFRRFIPPIMGMIDISPIIALFVLQLAERGVYAIL 85

Query: 61 AYV 63
           Y+
Sbjct: 86 GYI 88


>B1DKM4.1 B1DKM4_9BACL Putative uncharacterized protein
          Length = 90

 Score = 76.6 bits (187), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 46/63 (73%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGLQYIV 60
          +SWLPN R+SFIG  LG+LVEPYL  FRR IP + G +DISPIIA+F L F   GL  +V
Sbjct: 24 LSWLPNARESFIGVFLGRLVEPYLGIFRRFIPPIGGMLDISPIIAIFALRFIAYGLYAVV 83

Query: 61 AYV 63
           ++
Sbjct: 84 DFI 86


>Q9K9U7.1 Q9K9U7_BACHD BH2548 protein
          Length = 84

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGLQYI 59
          MSW PN R+S  G+ LG +VEPYL PFR+IIP L G IDISPI+A+F L FA+ G+  I
Sbjct: 25 MSWFPNARESSFGQFLGSIVEPYLAPFRKIIPPL-GMIDISPIVAIFALTFARYGVHAI 82


>Q65JW0.1 Q65JW0_BACLD YlmG
          Length = 89

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGL 56
          MSW+PN R+S  G +L  L EPYL PFRRIIP L G IDISPI+A+FVL+FA  GL
Sbjct: 25 MSWVPNARESSFGRVLASLCEPYLEPFRRIIPPL-GMIDISPIVAIFVLKFADAGL 79


>Q2B059.1 Q2B059_9BACI Integral membrane protein
          Length = 87

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 1  MSWLPNVRDSFIGELLGKLVEPYLTPFRRIIPALFGTIDISPIIALFVLEFAKNGLQYIV 60
          +SW PN R+S IG+ L ++ EPYL PFRR IP L G IDISPI+A+FVL FA +GL  + 
Sbjct: 25 LSWFPNARESSIGQFLARICEPYLEPFRRFIPPL-GMIDISPIVAIFVLRFATSGLYQLY 83

Query: 61 AYV 63
           +V
Sbjct: 84 YWV 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.331    0.151    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 395,884,750
Number of extensions: 12977949
Number of successful extensions: 32379
Number of sequences better than 1.0e-05: 164
Number of HSP's gapped: 32438
Number of HSP's successfully gapped: 164
Length of query: 64
Length of database: 3,060,696,203
Length adjustment: 36
Effective length of query: 28
Effective length of database: 2,721,539,663
Effective search space: 76203110564
Effective search space used: 76203110564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)