BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0023.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGA8.1 B3KGA8_9BACI Sporulation protein, yteA family 254 5e-66 B1DKL9.1 B1DKL9_9BACL Transcriptional regulator, TraR/DksA family 251 4e-65 C0ZG84.1 C0ZG84_BREBN Putative uncharacterized protein yteA 213 1e-53 Q2B8B9.1 Q2B8B9_9BACI Putative uncharacterized protein 200 1e-49 A4IS17.1 A4IS17_GEOTN DnaK suppressor protein 195 4e-48 >B3KGA8.1 B3KGA8_9BACI Sporulation protein, yteA family Length = 246 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 119/237 (50%), Positives = 168/237 (70%), Gaps = 2/237 (0%) Query: 12 MSHLPAEQLAKLRAAIIQQREDIEHRLKNSAHYGLQDSMRDMTGDLTEIDNHPGDAATEL 71 MSHL EQL L+ ++ ++ ++E R+ N+ +GL +S RDMTG+L+ IDNHPGD TE+ Sbjct: 1 MSHLTQEQLHNLQQKLMDRKVELERRMVNNDQHGLGESERDMTGELSHIDNHPGDVGTEV 60 Query: 72 YHRSMDISLLERDEHELDNIAAALAAMDEGTYGVCAVCGESIPLERLNAVPLTRFCKEHN 131 + R D++L +R + EL + +L A+ G YGVC C + IP ERL +P T++C EH Sbjct: 61 FERGKDLALQDRVDQELQRVIFSLEAIHHGRYGVCLTCSQPIPYERLEVIPDTQYCVEHT 120 Query: 132 PRQSSPFTRPAEEEFLSPPFGRTSLDERGEQNRFDGEDAWQIVESWGSSNSPAMAEGNDI 191 PR+ RP EE+ L+P FG++S+DE E FDGEDAWQIVESWG+SNSPA+AEGN++ Sbjct: 121 PRERVSRDRPIEEDVLAPAFGKSSMDEH-EYAAFDGEDAWQIVESWGNSNSPALAEGNEM 179 Query: 192 SSYNDMEIE-ADETEGFVEPWENFIATDIAGNHMMVIKGSSYRHYMDSGEGSYLLDP 247 SYN+M+IE D+ GFVE +ENF+AT+I G+ + +++ Y Y++ GEGSYLLDP Sbjct: 180 DSYNEMDIENGDDQGGFVEVYENFVATNIDGSEVFIVRSPQYVDYLNRGEGSYLLDP 236 >B1DKL9.1 B1DKL9_9BACL Transcriptional regulator, TraR/DksA family Length = 234 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 121/230 (52%), Positives = 162/230 (70%), Gaps = 1/230 (0%) Query: 17 AEQLAKLRAAIIQQREDIEHRLKNSAHYGLQDSMRDMTGDLTEIDNHPGDAATELYHRSM 76 A QLA+LR + ++ +IE R + H GL S+RD TG+L+ IDNHP D TEL+ RS Sbjct: 4 ATQLAQLRNRLEAEKREIEERQSRNEHNGLASSLRDNTGELSPIDNHPADLGTELFERSK 63 Query: 77 DISLLERDEHELDNIAAALAAMDEGTYGVCAVCGESIPLERLNAVPLTRFCKEHNPRQSS 136 D++LLE ++ L I+ AL AMD GTYG C CG+ IP ERL A+P + +C EH PRQ + Sbjct: 64 DLALLENEDLHLTRISQALEAMDNGTYGQCRACGKPIPDERLEALPDSLYCVEHAPRQET 123 Query: 137 PFTRPAEEEFLSPPFGRTSLDERGEQNRFDGEDAWQIVESWGSSNSPAMAEGNDISSYND 196 +PAEE+FL+PPFGR+S D+ + N FDGEDAWQIVE WG+S SPA +E N++ Y+ Sbjct: 124 SHRQPAEEDFLAPPFGRSSRDD-DDYNGFDGEDAWQIVEQWGTSESPAFSENNNVDDYDH 182 Query: 197 MEIEADETEGFVEPWENFIATDIAGNHMMVIKGSSYRHYMDSGEGSYLLD 246 + IEADE +GFVE +E+F+ATDI GNH+ VI+ Y+ YMD EG + L+ Sbjct: 183 IGIEADENDGFVESYESFVATDITGNHVSVIRNRHYKQYMDHEEGDHELE 232 >C0ZG84.1 C0ZG84_BREBN Putative uncharacterized protein yteA Length = 257 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/226 (46%), Positives = 147/226 (65%), Gaps = 6/226 (2%) Query: 20 LAKLRAAIIQQREDIEHRLKNSAHYGLQDSMRDMTGDLTEIDNHPGDAATELYHRSMDIS 79 +A R +++Q++++E R+++ HYG+++ M + + DNHP D +E++ R D++ Sbjct: 10 VASFREKLLEQKKELEDRVQD--HYGMREPMTTSLQEFSMYDNHPADIGSEMFEREKDLA 67 Query: 80 LLERDEHELDNIAAALAAMDEGTYGVCAVCGESIPLERLNAVPLTRFCKEHNPRQSSPFT 139 L D L I AL M+EGTYG+C VCGE IP+ERL A+P ++ CKEH P + Sbjct: 68 LDSLDRETLKEIDQALQRMEEGTYGLCTVCGEQIPVERLEALPQSQTCKEHAPAPIVNES 127 Query: 140 RPAEEEFLSPPFGRTSLDERGEQNRFDGEDAWQIVESWGSSNSPAMAEGNDISSYNDMEI 199 RP EEEFL PPFGRTSLDE+ QN FDGEDAWQIVESWG+S++P +G D + Y++M I Sbjct: 128 RPIEEEFLQPPFGRTSLDEKEGQNGFDGEDAWQIVESWGTSSTPFSYQGPDKTDYDEMYI 187 Query: 200 EADETEGFVEPWENFIATDIAGNH----MMVIKGSSYRHYMDSGEG 241 E++E +GFVE E TDI G H + ++ +Y YM GEG Sbjct: 188 ESNEPDGFVEAVEEIGYTDIEGYHGPDSVHFMRSGTYEEYMRKGEG 233 >Q2B8B9.1 Q2B8B9_9BACI Putative uncharacterized protein Length = 251 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 144/223 (64%), Gaps = 4/223 (1%) Query: 15 LPAEQLAKLRAAIIQQREDIEHRLKNSAHYGL-QDSMRDMTGDLTEIDNHPGDAATELYH 73 L +++A R+ ++ +++D+E R +++ ++ L +D + G+L+ DNHPGD TELY Sbjct: 2 LTKDEIAAFRSQLLHEKKDLEERFQSNDNFDLTRDHPHESVGELSSYDNHPGDEGTELYE 61 Query: 74 RSMDISLLERDEHELDNIAAALAAMDEGTYGVCAVCGESIPLERLNAVPLTRFCKEHNPR 133 R D++L E + EL NI AL A+D+GTYG+C VC + IP ERL A+P T +CKEH+P Sbjct: 62 REKDLALNEHYKLELSNILKALQAIDQGTYGICEVCHKEIPKERLEALPNTTYCKEHSPD 121 Query: 134 QSSPFTRPAEEEFLSPPFGRTSLDERGEQNRFDGEDAWQIVESWGSSNSPA-MAEGNDIS 192 Q + RP EE L PPFG+ +DE+ E FD EDAWQ VESWG+S +P+ +D Sbjct: 122 QVTSHERPIEEGVLMPPFGKFDMDEQDENVSFDAEDAWQEVESWGNSETPSDFIVPHD-- 179 Query: 193 SYNDMEIEADETEGFVEPWENFIATDIAGNHMMVIKGSSYRHY 235 YND IEA+E G+VE +ENFI TDI G ++ V + + Y Sbjct: 180 HYNDTNIEAEENIGYVEDYENFIGTDIEGKNITVYPSAQHERY 222 >A4IS17.1 A4IS17_GEOTN DnaK suppressor protein Length = 254 Score = 195 bits (495), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 96/213 (45%), Positives = 136/213 (63%), Gaps = 2/213 (0%) Query: 15 LPAEQLAKLRAAIIQQREDIEHRLKNSAHYGLQDS-MRDMTGDLTEIDNHPGDAATELYH 73 L +EQLA R+ +++ + DIE RLK + H+G+ S D G+L DNHP D ATELY Sbjct: 2 LTSEQLAAFRSTLLEMKRDIEDRLKQNDHFGIVRSHAHDAVGELASYDNHPADEATELYE 61 Query: 74 RSMDISLLERDEHELDNIAAALAAMDEGTYGVCAVCGESIPLERLNAVPLTRFCKEHNPR 133 R D++L E E EL I AL A+D+GTYG C VCG+ IP ERL A+P T +C++H+P Sbjct: 62 REKDLALDEHTERELREIEQALEAIDDGTYGTCRVCGQPIPYERLEALPTTLYCRQHSPD 121 Query: 134 QSSPFTRPAEEEFLSPPFGRTSLDERGEQNRFDGEDAWQIVESWGSSNSPAMAEGNDISS 193 Q+ RP EE L PPFG+ D+R E +D EDAWQ V +G+S++P+ G ++ Sbjct: 122 QTVSQKRPLEEGVLMPPFGKFDFDDRDESVAYDAEDAWQEVARYGTSDTPSDL-GKNVDH 180 Query: 194 YNDMEIEADETEGFVEPWENFIATDIAGNHMMV 226 Y+++ E++E G+VE ENF A D+ G ++ V Sbjct: 181 YSEVYAESEENVGYVEDLENFAAVDLYGRNVNV 213 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,614,777,387 Number of extensions: 68983073 Number of successful extensions: 119414 Number of sequences better than 1.0e-05: 264 Number of HSP's gapped: 119268 Number of HSP's successfully gapped: 264 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)