BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0022.p (166 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGA9.1 B3KGA9_9BACI Lipoprotein signal peptidase EC=3.4.23.36 221 1e-56 A8FD10.1 LSPA_BACP2 Lipoprotein signal peptidase EC=3.4.23.36 155 1e-36 A6CPR0.1 A6CPR0_9BACI Lipoprotein signal peptidase EC=3.4.23.36 153 5e-36 B4AE76.1 B4AE76_BACPU Lipoprotein signal peptidase EC=3.4.23.36 152 7e-36 Q9K9V2.1 LSPA_BACHD Lipoprotein signal peptidase EC=3.4.23.36 152 8e-36 >B3KGA9.1 B3KGA9_9BACI Lipoprotein signal peptidase EC=3.4.23.36 Length = 166 Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 117/169 (69%), Positives = 132/169 (78%), Gaps = 7/169 (4%) Query: 1 VYYLIALIVFLVDQGTKYLIATRLELGEQIPVIKDFFIITSHRNQGAAFGILQGQQWFFX 60 VYYLIA ++FL+DQGTKYLIATRLEL EQIPVI DFF+ITS RN+GAAFGILQ Q WFF Sbjct: 2 VYYLIAFVLFLIDQGTKYLIATRLELYEQIPVIGDFFLITSSRNRGAAFGILQDQLWFFI 61 Query: 61 XXXXXXXXXXXWYLNK-AKATRKLLPTALALVLGGAVGNFLDRLLNGEVVDFLMFNFGSY 119 WYL K +K RKLLPTALALVLGGA+GNF+DRL+ GEVVDFL FNFGSY Sbjct: 62 VVTLIVVGGIVWYLQKVSKEGRKLLPTALALVLGGALGNFIDRLIMGEVVDFLQFNFGSY 121 Query: 120 TFPIFNVADSCIVIGVGLIILDTLLDMKSGEEINEVKETKEVR--EGNE 166 TFPIFN+ADSCIVIGVGLIILDTLL+ + +++ T EV EG E Sbjct: 122 TFPIFNIADSCIVIGVGLIILDTLLEGRR----EKMQTTSEVSGTEGTE 166 >A8FD10.1 LSPA_BACP2 Lipoprotein signal peptidase EC=3.4.23.36 Length = 155 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/150 (52%), Positives = 99/150 (66%) Query: 2 YYLIALIVFLVDQGTKYLIATRLELGEQIPVIKDFFIITSHRNQGAAFGILQGQQWFFXX 61 YY+IA ++ +DQ TK+LI + LG+ PVI FF ITSHRN GAA+GILQGQ WFF Sbjct: 3 YYIIAFVMICLDQLTKWLIVKNMMLGDSYPVIDGFFYITSHRNSGAAWGILQGQMWFFYV 62 Query: 62 XXXXXXXXXXWYLNKAKATRKLLPTALALVLGGAVGNFLDRLLNGEVVDFLMFNFGSYTF 121 +YL K KLL ALAL+LGGA+GNF+DR+ EVVDF F FG+Y + Sbjct: 63 ITLVVIAGIVYYLQKHGQKDKLLGVALALMLGGAIGNFIDRVFRQEVVDFAHFVFGNYHY 122 Query: 122 PIFNVADSCIVIGVGLIILDTLLDMKSGEE 151 PIFN+ADS + +GV L+ + LLD K +E Sbjct: 123 PIFNIADSSLCVGVILLFIQMLLDGKKTKE 152 >A6CPR0.1 A6CPR0_9BACI Lipoprotein signal peptidase EC=3.4.23.36 Length = 164 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/164 (51%), Positives = 103/164 (62%), Gaps = 8/164 (4%) Query: 2 YYLIALIVFLVDQGTKYLIATRLELGEQIPVIKDFFIITSHRNQGAAFGILQGQQWFFXX 61 YYLIALIV +DQ TK+LI + G+ I VI+D F ITSHRNQGAA+GILQGQ WFF Sbjct: 3 YYLIALIVVALDQLTKWLIVRNMTEGQSITVIEDLFYITSHRNQGAAWGILQGQMWFFYI 62 Query: 62 XXXXXXXXXXWYLNKAKATRKLLPTALALVLGGAVGNFLDRLLNGEVVDFLMFNFGSYTF 121 +YL K KL +LAL+LGGA+GNF+DRL EVVDFL Y F Sbjct: 63 ITIAVIIGIVYYLEKQAKGDKLFSISLALLLGGAIGNFIDRLFRKEVVDFLNTYIFQYDF 122 Query: 122 PIFNVADSCIVIGVGLIILDTLLDMKSGEEINEVKETKEVREGN 165 PIFN+AD+ + GVGL+I++ LL+ E +E KE GN Sbjct: 123 PIFNIADAALTFGVGLLIINMLLE--------ERREKKEKLYGN 158 >B4AE76.1 B4AE76_BACPU Lipoprotein signal peptidase EC=3.4.23.36 Length = 155 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 77/150 (51%), Positives = 98/150 (65%) Query: 2 YYLIALIVFLVDQGTKYLIATRLELGEQIPVIKDFFIITSHRNQGAAFGILQGQQWFFXX 61 YY+IA ++ +DQ TK+LI + G+ PVI FF ITSHRN GAA+GILQGQ WFF Sbjct: 3 YYIIAFVMICLDQLTKWLIVKNMMPGDSYPVIDGFFYITSHRNSGAAWGILQGQMWFFYV 62 Query: 62 XXXXXXXXXXWYLNKAKATRKLLPTALALVLGGAVGNFLDRLLNGEVVDFLMFNFGSYTF 121 +YL K KLL ALAL+LGGA+GNF+DR+ EVVDF F FG+Y + Sbjct: 63 ITLVVIAGIVYYLQKHGQKDKLLGVALALMLGGAIGNFIDRVFRQEVVDFAHFVFGNYHY 122 Query: 122 PIFNVADSCIVIGVGLIILDTLLDMKSGEE 151 PIFN+ADS + +GV L+ + LLD K +E Sbjct: 123 PIFNIADSSLCVGVILLFIQMLLDGKKTKE 152 >Q9K9V2.1 LSPA_BACHD Lipoprotein signal peptidase EC=3.4.23.36 Length = 156 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 68/151 (45%), Positives = 101/151 (66%) Query: 1 VYYLIALIVFLVDQGTKYLIATRLELGEQIPVIKDFFIITSHRNQGAAFGILQGQQWFFX 60 +YY++AL++ L+DQ TK+L+ +E+GE IP++ +TSHRN+GAAFGIL+GQ W F Sbjct: 2 IYYIVALVIILLDQWTKWLVVRHMEIGESIPLLDSVLYLTSHRNKGAAFGILEGQMWLFY 61 Query: 61 XXXXXXXXXXXWYLNKAKATRKLLPTALALVLGGAVGNFLDRLLNGEVVDFLMFNFGSYT 120 +Y+ K ++ TALAL+LGGA+GNF+DR+ GEVVDF+ +Y Sbjct: 62 IITSIVVIGIVYYMEKEAKHDRVFATALALILGGAIGNFIDRIFRGEVVDFVNTYIFTYN 121 Query: 121 FPIFNVADSCIVIGVGLIILDTLLDMKSGEE 151 FPIFNVADS + +GVG++ L + D + ++ Sbjct: 122 FPIFNVADSALCVGVGILFLKMIRDERKAKK 152 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.145 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 877,390,299 Number of extensions: 31681285 Number of successful extensions: 96513 Number of sequences better than 1.0e-05: 1405 Number of HSP's gapped: 95114 Number of HSP's successfully gapped: 1405 Length of query: 166 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 41 Effective length of database: 1,883,069,328 Effective search space: 77205842448 Effective search space used: 77205842448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)