BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0019.p (197 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGB4.1 B3KGB4_9BACI Uracil phosphoribosyltransferase EC=2.4.2.9 278 2e-73 B1DKL2.1 B1DKL2_9BACL Uracil phosphoribosyltransferase EC=2.4.2.9 245 1e-63 Q5L0U8.1 PYRR_GEOKA Bifunctional protein pyrR Pyrimidine operon ... 226 8e-58 P41007.1 PYRR_BACCL Bifunctional protein pyrR Pyrimidine operon ... 226 8e-58 C3J089.1 C3J089_9BACI Uracil phosphoribosyltransferase EC=2.4.2.9 225 1e-57 >B3KGB4.1 B3KGB4_9BACI Uracil phosphoribosyltransferase EC=2.4.2.9 Length = 186 Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 144/196 (73%), Positives = 161/196 (82%), Gaps = 13/196 (6%) Query: 5 MVTEKNVIMDETAIRRALSRIAHEILEKNKGIENCLLVGIRTRGVYLAQRIAERIKEIEG 64 M E++VIMDETAIRRAL+RIAHEILEKNKGIE+C+LVGIRTRGV+LAQRIAER+ EIEG Sbjct: 1 MSNEQHVIMDETAIRRALTRIAHEILEKNKGIEDCVLVGIRTRGVFLAQRIAERMNEIEG 60 Query: 65 VDIPYGELDITHYRDDREGGG---DNREAMDRTVVNSNLTLPAGSSGIKDKKVILFDDVL 121 IP+GE+D+T YRDDR+ G + E ++ + N I DKKVILFDDVL Sbjct: 61 TPIPWGEIDVTSYRDDRDSKGAAAERGEGAKHSLAHLN---------IHDKKVILFDDVL 111 Query: 122 YTGRTIRAAMDALMDCGRPRMIQLAVLADRGHRELPIRPDYIGKNVPTSRHEQIEVALTE 181 YTGRTIRAAMDALMDCGRPRMIQLAVLADRGHRELPIRPDYIGKNVPTS+ E+I VALTE Sbjct: 112 YTGRTIRAAMDALMDCGRPRMIQLAVLADRGHRELPIRPDYIGKNVPTSKQEEITVALTE 171 Query: 182 FDGKDEVYIISNREER 197 DGKDEV IS REER Sbjct: 172 IDGKDEV-TISQREER 186 >B1DKL2.1 B1DKL2_9BACL Uracil phosphoribosyltransferase EC=2.4.2.9 Length = 190 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/191 (67%), Positives = 150/191 (78%), Gaps = 5/191 (2%) Query: 5 MVTEKNVIMDETAIRRALSRIAHEILEKNKGIENCLLVGIRTRGVYLAQRIAERIKEIEG 64 M E VIMDETAIRRAL+RIAHEI+EKNKGI+NC+L+GIRTRG+YLA+RIA+RI++IEG Sbjct: 1 MEEEHLVIMDETAIRRALTRIAHEIVEKNKGIDNCVLIGIRTRGIYLARRIADRIQDIEG 60 Query: 65 VDIPYGELDITHYRDDREGGG-DNREAMDRTVVNSNLTLPAGSSGIKDKKVILFDDVLYT 123 + ELDIT YRDDR+ D R + + + N L + DKKVIL DDVL+T Sbjct: 61 KPVEVRELDITSYRDDRKAASVDTRVELAAVIGDLNGELFSAH----DKKVILCDDVLFT 116 Query: 124 GRTIRAAMDALMDCGRPRMIQLAVLADRGHRELPIRPDYIGKNVPTSRHEQIEVALTEFD 183 GRTIRAAMDALMDCGRP IQLAVL DRGHRELPIRPDY+GKNVPTS+ EQI+V+LTE D Sbjct: 117 GRTIRAAMDALMDCGRPESIQLAVLVDRGHRELPIRPDYVGKNVPTSKQEQIDVSLTEID 176 Query: 184 GKDEVYIISNR 194 KD+V II R Sbjct: 177 LKDQVMIIHQR 187 >Q5L0U8.1 PYRR_GEOKA Bifunctional protein pyrR Pyrimidine operon regulatory protein Uracil phosphoribosyltransferase EC=2.4.2.9 Length = 179 Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 114/183 (62%), Positives = 142/183 (77%), Gaps = 8/183 (4%) Query: 8 EKNVIMDETAIRRALSRIAHEILEKNKGIENCLLVGIRTRGVYLAQRIAERIKEIEGVDI 67 +K V+MDE AIRRAL+RIAHEI+E+NKGI+ C+LVGI+TRG+YLA+R+AERI++IEG + Sbjct: 2 QKAVVMDEQAIRRALTRIAHEIIERNKGIDGCVLVGIKTRGIYLARRLAERIEQIEGASV 61 Query: 68 PYGELDITHYRDDREGGGDNREAMDRTVVNSNLTLPAGSSGIKDKKVILFDDVLYTGRTI 127 P GELDIT YRDD D+ E + V +N+ P + ++ VIL DDVL+TGRT+ Sbjct: 62 PVGELDITLYRDDLTVKTDDHEPL---VKGTNVPFP-----VTERNVILVDDVLFTGRTV 113 Query: 128 RAAMDALMDCGRPRMIQLAVLADRGHRELPIRPDYIGKNVPTSRHEQIEVALTEFDGKDE 187 RAAMDA+MD GRP IQLAVL DRGHRELPIR D++GKNVPTSR E I V L+E DG D+ Sbjct: 114 RAAMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELSEVDGIDQ 173 Query: 188 VYI 190 V I Sbjct: 174 VSI 176 >P41007.1 PYRR_BACCL Bifunctional protein pyrR Pyrimidine operon regulatory protein Uracil phosphoribosyltransferase EC=2.4.2.9 Length = 179 Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 114/183 (62%), Positives = 142/183 (77%), Gaps = 8/183 (4%) Query: 8 EKNVIMDETAIRRALSRIAHEILEKNKGIENCLLVGIRTRGVYLAQRIAERIKEIEGVDI 67 +K V+MDE AIRRAL+RIAHEI+E+NKGI+ C+LVGI+TRG+YLA+R+AERI++IEG + Sbjct: 2 QKAVVMDEQAIRRALTRIAHEIIERNKGIDGCVLVGIKTRGIYLARRLAERIEQIEGASV 61 Query: 68 PYGELDITHYRDDREGGGDNREAMDRTVVNSNLTLPAGSSGIKDKKVILFDDVLYTGRTI 127 P GELDIT YRDD D+ E + V +N+ P + ++ VIL DDVL+TGRT+ Sbjct: 62 PVGELDITLYRDDLTVKTDDHEPL---VKGTNVPFP-----VTERNVILVDDVLFTGRTV 113 Query: 128 RAAMDALMDCGRPRMIQLAVLADRGHRELPIRPDYIGKNVPTSRHEQIEVALTEFDGKDE 187 RAAMDA+MD GRP IQLAVL DRGHRELPIR D++GKNVPTSR E I V L+E DG D+ Sbjct: 114 RAAMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELSEVDGIDQ 173 Query: 188 VYI 190 V I Sbjct: 174 VSI 176 >C3J089.1 C3J089_9BACI Uracil phosphoribosyltransferase EC=2.4.2.9 Length = 206 Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/183 (62%), Positives = 142/183 (77%), Gaps = 8/183 (4%) Query: 8 EKNVIMDETAIRRALSRIAHEILEKNKGIENCLLVGIRTRGVYLAQRIAERIKEIEGVDI 67 +K V+MDE AIRRAL+RIAHEI+E+NKGI+ C+LVGI+TRG+YLA+R+AERI++IEG + Sbjct: 29 QKAVVMDEQAIRRALTRIAHEIIERNKGIDGCVLVGIKTRGIYLARRLAERIEQIEGASV 88 Query: 68 PYGELDITHYRDDREGGGDNREAMDRTVVNSNLTLPAGSSGIKDKKVILFDDVLYTGRTI 127 P GELDIT YRDD D+ E + V +N+ P + ++ VIL DDVL+TGRT+ Sbjct: 89 PVGELDITLYRDDLTVKTDDHEPL---VKGTNVPFP-----VTERNVILVDDVLFTGRTV 140 Query: 128 RAAMDALMDCGRPRMIQLAVLADRGHRELPIRPDYIGKNVPTSRHEQIEVALTEFDGKDE 187 RAAMDA+MD GRP IQLAVL DRGHRELPIR D++GKNVPTSR E I V L+E DG D+ Sbjct: 141 RAAMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELSEVDGIDQ 200 Query: 188 VYI 190 V I Sbjct: 201 VSI 203 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,155,310,620 Number of extensions: 48835448 Number of successful extensions: 117521 Number of sequences better than 1.0e-05: 823 Number of HSP's gapped: 116617 Number of HSP's successfully gapped: 823 Length of query: 197 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 68 Effective length of database: 1,845,385,268 Effective search space: 125486198224 Effective search space used: 125486198224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)