BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0018.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGB5.1 B3KGB5_9BACI Aspartate carbamoyltransferase EC=2.1.3.2 503 e-141 B1DKL1.1 B1DKL1_9BACL Aspartate carbamoyltransferase EC=2.1.3.2 454 e-126 C0ZG42.1 C0ZG42_BREBN Aspartate carbamoyltransferase EC=2.1.3.2 318 4e-85 A6CPR4.1 A6CPR4_9BACI Aspartate carbamoyltransferase catalytic s... 306 2e-81 C2WB24.1 C2WB24_BACCE Aspartate carbamoyltransferase 296 1e-78 >B3KGB5.1 B3KGB5_9BACI Aspartate carbamoyltransferase EC=2.1.3.2 Length = 302 Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust. Identities = 235/301 (78%), Positives = 269/301 (89%) Query: 1 MMTATKVKERSLLGIKELDRTEILQLLNRTAYWDNQAEKLTPVLRSHFVANMFFENSTRT 60 M TA +KERSLLG+K++ R EI +LNR AYW+ Q+EK+ PVL+S F NMFFENSTRT Sbjct: 1 MTTAISLKERSLLGLKDISRDEIGSILNRAAYWEAQSEKVVPVLQSKFAVNMFFENSTRT 60 Query: 61 RFSFEMAEKRLGVQVLNFTAAASSVEKGESIYDTVRTLESMGIDAGVVRLKPAGVLQQLA 120 RFSFEMAEKRLG QV+NF AAASSVEKGESIYDTVRTLESMGIDAGV+RLKPAGVLQ+LA Sbjct: 61 RFSFEMAEKRLGAQVMNFAAAASSVEKGESIYDTVRTLESMGIDAGVIRLKPAGVLQELA 120 Query: 121 EKVSIPLINAGDGNNEHPTQALLDLYTMSKNFGELKGLKVSIIGDIMHSRVARSNLWGLT 180 E++SIPL+NAGDGNNEHPTQALLDLYTM K+FGELKGL VSIIGDI HSRVARS+LW L Sbjct: 121 ERISIPLVNAGDGNNEHPTQALLDLYTMKKSFGELKGLTVSIIGDIKHSRVARSDLWALQ 180 Query: 181 KMGAKVQFCAPDNMKAPELAEFAPYVTMEEALKADVVMMLRVQLERHATGILQSADEYRK 240 K GA VQFCAP+ M+APELA++APYV+ME+ALKADVVMMLRVQLERH G+ +S+ EYR+ Sbjct: 181 KFGAHVQFCAPETMQAPELAQYAPYVSMEKALKADVVMMLRVQLERHNEGVFKSSAEYRE 240 Query: 241 QFGLTEERAAKLDKNTIIMHPAPVNRNVEIDDAVVESDKSRIFPQMANGVPVRMAVIERA 300 Q+GLTEERAAKL +T+IMHPAPVNRNVEIDDAVVES +S IF QMANGVP+RMAV+ERA Sbjct: 241 QYGLTEERAAKLSGHTMIMHPAPVNRNVEIDDAVVESPRSMIFKQMANGVPIRMAVMERA 300 Query: 301 I 301 + Sbjct: 301 M 301 >B1DKL1.1 B1DKL1_9BACL Aspartate carbamoyltransferase EC=2.1.3.2 Length = 300 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/301 (70%), Positives = 254/301 (84%), Gaps = 2/301 (0%) Query: 1 MMTATKVKERSLLGIKELDRTEILQLLNRTAYWDNQAEKLTPVLRSHFVANMFFENSTRT 60 M T T++K+RSLLG+K+L + EI +L+R AYW+ K+ V++ F ANMFFENSTRT Sbjct: 1 MTTMTQLKQRSLLGLKDLSKEEIESILDRAAYWEQHPNKVHNVMQGKFAANMFFENSTRT 60 Query: 61 RFSFEMAEKRLGVQVLNFTAAASSVEKGESIYDTVRTLESMGIDAGVVRLKPAGVLQQLA 120 RFSFE+AEKRLG +VLNF+AA SSV+KGESIYDTVRTLESMGID G++RLKP GVL +LA Sbjct: 61 RFSFEVAEKRLGAEVLNFSAAVSSVQKGESIYDTVRTLESMGIDVGIIRLKPIGVLAELA 120 Query: 121 EKVSIPLINAGDGNNEHPTQALLDLYTMSKNFGELKGLKVSIIGDIMHSRVARSNLWGLT 180 K+ +PLINAGDGNNEHPTQALLDLYTM K+FG L GL VSIIGD++HSRVARSNLW L Sbjct: 121 TKIQVPLINAGDGNNEHPTQALLDLYTMRKHFGNLNGLTVSIIGDVLHSRVARSNLWALR 180 Query: 181 KMGAKVQFCAPDNMKAPELAEFAPYVTMEEALKADVVMMLRVQLERHATGILQSADEYRK 240 K GAKVQFC+P NM A +L PYVTM+EALKADVVMMLRVQLERH +G+L SA+ YR+ Sbjct: 181 KFGAKVQFCSPSNMTATDLD--VPYVTMDEALKADVVMMLRVQLERHESGMLNSAEAYRE 238 Query: 241 QFGLTEERAAKLDKNTIIMHPAPVNRNVEIDDAVVESDKSRIFPQMANGVPVRMAVIERA 300 QFGLT ERA+++ ++ IIMHPAP+NR VEIDD +VE +SRIFPQMANGVP+RMAV+ERA Sbjct: 239 QFGLTVERASQIAEHAIIMHPAPINRGVEIDDELVEHPQSRIFPQMANGVPIRMAVVERA 298 Query: 301 I 301 + Sbjct: 299 L 299 >C0ZG42.1 C0ZG42_BREBN Aspartate carbamoyltransferase EC=2.1.3.2 Length = 313 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 157/288 (54%), Positives = 199/288 (69%), Gaps = 1/288 (0%) Query: 12 LLGIKELDRTEILQLLNRTAYWDNQAEKLTPVLRSHFVANMFFENSTRTRFSFEMAEKRL 71 L+G+K+L + +I+QLL R YW + + +LR FVAN+FFE STRTRFSFE+A+KRL Sbjct: 7 LIGLKDLSKEQIIQLLERAEYWAARPTEQADILRGRFVANLFFEASTRTRFSFEVAQKRL 66 Query: 72 GVQVLNFTAAASSVEKGESIYDTVRTLESMGIDAGVVRLKPAGVLQQLAEKVSIPLINAG 131 G VLNF SS KGE++YDT+RTLE+MG++A V+R K G+LQ+LAE V + LINAG Sbjct: 67 GAHVLNFIPETSSTVKGETVYDTIRTLEAMGVEAAVIRTKKEGLLQELAESVDLKLINAG 126 Query: 132 DGNNEHPTQALLDLYTMSKNFGELKGLKVSIIGDIMHSRVARSNLWGLTKMGAKVQFCAP 191 DG NEHPTQ LLDL TM + FG+L GL V+IIGD+ HSRV S+L L K+G + P Sbjct: 127 DGTNEHPTQCLLDLLTMKRQFGKLSGLTVAIIGDLRHSRVLGSHLHALPKLGVNLLLSGP 186 Query: 192 DNMKAPELAEFAPYVTMEEALK-ADVVMMLRVQLERHATGILQSADEYRKQFGLTEERAA 250 M + + V MEEA++ ADVVMMLRVQLERHA + S +EY K GLT +RA Sbjct: 187 ATMMPAHIPQGVKIVEMEEAVQTADVVMMLRVQLERHAESLYLSKEEYHKAHGLTLDRAK 246 Query: 251 KLDKNTIIMHPAPVNRNVEIDDAVVESDKSRIFPQMANGVPVRMAVIE 298 + +IMHPAPVNR VEI +VE + S I Q+ NGV RMAV+E Sbjct: 247 MMKSGAVIMHPAPVNRGVEIHTDLVECETSLIQTQVTNGVAARMAVLE 294 >A6CPR4.1 A6CPR4_9BACI Aspartate carbamoyltransferase catalytic subunit EC=2.1.3.2 Length = 343 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 158/293 (53%), Positives = 207/293 (70%), Gaps = 3/293 (1%) Query: 10 RSLLGIKELDRTEILQLLNRTAYWDNQAEKLTPVLRSHFVANMFFENSTRTRFSFEMAEK 69 + LL + +L EI ++L+ + N E+ TPV S ++AN+FFENSTRT+ SFEMAE+ Sbjct: 47 KHLLTMADLQPAEIEEILSTAEGFKN-GEQWTPV-TSRYIANLFFENSTRTKCSFEMAER 104 Query: 70 RLGVQVLNFTAAASSVEKGESIYDTVRTLESMGIDAGVVRLKPAGVLQQLAEKVSIPLIN 129 +LG+QV+ F SSV KGE++YDTV+TLE++GIDA V+R + L + VSIP++N Sbjct: 105 KLGLQVIPFEIGTSSVSKGETLYDTVKTLEAIGIDAVVIRHEKDRYFDDLIDHVSIPILN 164 Query: 130 AGDGNNEHPTQALLDLYTMSKNFGELKGLKVSIIGDIMHSRVARSNLWGLTKMGAKVQFC 189 GDG HPTQ LLDL T+ + FG +GLKVSIIGDI HSRVARSN L K+GA+V F Sbjct: 165 GGDGCGNHPTQCLLDLLTIKEEFGSFQGLKVSIIGDITHSRVARSNAEALKKLGAEVYFS 224 Query: 190 APDNMKAPELAEFAPYVTMEEALK-ADVVMMLRVQLERHATGILQSADEYRKQFGLTEER 248 P +L E Y+ ++EA+K D VM+LRVQ ERH + + +EY +QFGLT ER Sbjct: 225 GPTEWFPQDLVESGQYLPVDEAVKTGDAVMLLRVQHERHESTSTLTKEEYHQQFGLTAER 284 Query: 249 AAKLDKNTIIMHPAPVNRNVEIDDAVVESDKSRIFPQMANGVPVRMAVIERAI 301 AA++ ++ IIMHPAPVNR VEI D +VES KSRIF QM NGV VRMAV++RA+ Sbjct: 285 AAQMKEHGIIMHPAPVNRGVEIADVLVESKKSRIFRQMENGVFVRMAVLKRAL 337 >C2WB24.1 C2WB24_BACCE Aspartate carbamoyltransferase Length = 305 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/292 (52%), Positives = 204/292 (69%), Gaps = 4/292 (1%) Query: 11 SLLGIKELDRTEILQLLNRTAYWDNQAEKLTPVLRSHFVANMFFENSTRTRFSFEMAEKR 70 +LL + EL + EI ++L + N EK T FVAN+FFENSTRT+FSFE+AEK+ Sbjct: 4 NLLTMSELSKQEISEILKDAEDFANGKEKKTT--EQTFVANLFFENSTRTKFSFEVAEKK 61 Query: 71 LGVQVLNFTAAASSVEKGESIYDTVRTLESMGIDAGVVRLKPAGVLQQLAEKVSIPLINA 130 LG+ VLNF A +SSV+KGE++YDT+RTLES+G A V+R + +L +KV+IP++NA Sbjct: 62 LGLDVLNFEADSSSVQKGETLYDTIRTLESIGTKAVVIRHQQDRYFDELKDKVNIPILNA 121 Query: 131 GDGNNEHPTQALLDLYTMSKNFGELKGLKVSIIGDIMHSRVARSNLWGLTKMGAKVQFCA 190 GDG HPTQ LLDL T+ + FG +GLK++I+GDI HSRVARSN LTK+GA + F + Sbjct: 122 GDGCGNHPTQCLLDLLTIKQEFGSFEGLKIAIVGDISHSRVARSNAEALTKLGATIYFAS 181 Query: 191 PDNMKAPELAEFAPYVTMEEAL-KADVVMMLRVQLERHATGILQSADEYRKQFGLTEERA 249 P+ K E F Y ++E + + DV+M+LRVQ ERH EY +Q GLT ER Sbjct: 182 PEEWK-DETNTFGTYKELDELVPEVDVMMLLRVQHERHDNYETDIMKEYHEQHGLTIERE 240 Query: 250 AKLDKNTIIMHPAPVNRNVEIDDAVVESDKSRIFPQMANGVPVRMAVIERAI 301 ++ + +IIMHPAPVNR+VEI +VE ++SRIF QM NGV VRMAV++RA+ Sbjct: 241 KRMKQGSIIMHPAPVNRDVEIASELVECERSRIFKQMENGVYVRMAVLKRAL 292 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,569,318,668 Number of extensions: 60540752 Number of successful extensions: 180873 Number of sequences better than 1.0e-05: 3454 Number of HSP's gapped: 176023 Number of HSP's successfully gapped: 3457 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)