BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0016.p (392 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGB7.1 B3KGB7_9BACI Carbamoyl-phosphate synthase, small subunit 676 0.0 B1DKK9.1 B1DKK9_9BACL Carbamoyl-phosphate synthase, small subunit 608 e-172 C0ZG40.1 C0ZG40_BREBN Carbamoyl-phosphate synthase small chain E... 514 e-144 A6CPR6.1 A6CPR6_9BACI Carbamoyl-phosphate synthase small subunit... 481 e-134 C5D8P9.1 C5D8P9_9BACI Carbamoyl-phosphate synthase, small subunit 478 e-133 >B3KGB7.1 B3KGB7_9BACI Carbamoyl-phosphate synthase, small subunit Length = 378 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/375 (84%), Positives = 343/375 (91%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 MQARLLL+DGTLF+G +FGA+ E TGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN Sbjct: 1 MQARLLLEDGTLFSGKSFGADAEMTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGITRDDFES+RPFVHGFVVRRHE VPSNWRAEYSVD LLKEYGIPGISEIDTRMLTRII Sbjct: 61 YGITRDDFESIRPFVHGFVVRRHEPVPSNWRAEYSVDSLLKEYGIPGISEIDTRMLTRII 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 RHYGTMK ILTTSNK VEEL EM+GDTTI ELRNQVA+TST + SPG+KERIVLVD+G Sbjct: 121 RHYGTMKGILTTSNKPVEELKEMLGDTTIAELRNQVAKTSTPQMFTSPGSKERIVLVDFG 180 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 AK+GILREL +RGCDV+VVPHD TADEIRRL+PDGIQLSNGPGDPKDVPYAV + ELLG Sbjct: 181 AKSGILRELTSRGCDVMVVPHDTTADEIRRLHPDGIQLSNGPGDPKDVPYAVNMVKELLG 240 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 EYPIFGICLGHQLFALA GADTEKLKFGHRGGNHPVKEL SGRC+ITSQNHGYTVNEESV Sbjct: 241 EYPIFGICLGHQLFALAAGADTEKLKFGHRGGNHPVKELASGRCYITSQNHGYTVNEESV 300 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 + T+LEVTHINNNDKT+EGLKH+++PAFSVQYHPEAAPGPHDSSYLFD+FL+MI DHK Sbjct: 301 KGTELEVTHINNNDKTIEGLKHSKFPAFSVQYHPEAAPGPHDSSYLFDQFLKMIRDHKQN 360 Query: 361 TPAGSRQAQLAANAR 375 RQA LAA + Sbjct: 361 EIRKPRQAVLAAAVK 375 >B1DKK9.1 B1DKK9_9BACL Carbamoyl-phosphate synthase, small subunit Length = 381 Score = 608 bits (1567), Expect = e-172, Method: Compositional matrix adjust. Identities = 285/375 (76%), Positives = 323/375 (86%), Gaps = 2/375 (0%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 MQARLLL+DGTLFTG +FGAE + GEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN Sbjct: 1 MQARLLLEDGTLFTGQSFGAEAQTFGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI+RDDFES+RP +HGFVVRR+E VPSNWRA+YS+ DLLKEY IPGI+ IDTRMLTRI+ Sbjct: 61 YGISRDDFESIRPSIHGFVVRRYEPVPSNWRAQYSLGDLLKEYNIPGITGIDTRMLTRIL 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R +GTMK +LTT +RVEEL E +G I+ + +QVARTST + ++SPG RIVLVD+G Sbjct: 121 RQHGTMKGVLTTGTERVEELQERLGG--IQLMTDQVARTSTKSVFSSPGFGPRIVLVDFG 178 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 AK+GILREL RGCDVVVVPH+ TADEIR+L PDGIQLSNGPGDPKDVPYAV+ I ELLG Sbjct: 179 AKSGILRELTERGCDVVVVPHNTTADEIRKLAPDGIQLSNGPGDPKDVPYAVQMIKELLG 238 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 E PIFGICLGHQLFALACGADT +LKFGHRGGNHPVKEL +GRC++TSQNHGYTV E+S+ Sbjct: 239 EIPIFGICLGHQLFALACGADTTRLKFGHRGGNHPVKELATGRCYVTSQNHGYTVLEDSI 298 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 +L VTHINNNDKT+EGLKH +YPAFSVQYHPEAAPGP DSSYLFD FL+MI +HK Sbjct: 299 NSKELTVTHINNNDKTIEGLKHNKYPAFSVQYHPEAAPGPFDSSYLFDEFLEMIREHKQN 358 Query: 361 TPAGSRQAQLAANAR 375 P RQA LAA + Sbjct: 359 NPQKPRQAVLAATLK 373 >C0ZG40.1 C0ZG40_BREBN Carbamoyl-phosphate synthase small chain EC=6.3.5.5 Length = 365 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/367 (67%), Positives = 294/367 (80%), Gaps = 3/367 (0%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ARL+L+DGT F GTAFGA E GEVVFNTG+TGYQEVLSDPSYCGQIVTMTYPLIGN Sbjct: 1 MRARLILEDGTEFIGTAFGATKESYGEVVFNTGLTGYQEVLSDPSYCGQIVTMTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI RDDFE+VRP++HGFVVR H PSNWR ++D+LLK Y IPGI+ IDTRMLTR I Sbjct: 61 YGINRDDFEAVRPYIHGFVVREHCEAPSNWRNTNTLDELLKTYEIPGIAGIDTRMLTRKI 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R++GTMK ++TTS + EL+ + TT+ + +QV R ST + ++ PG R+VLVD+G Sbjct: 121 RYHGTMKGMITTSEAPLAELVAALNGTTL--MTDQVPRVSTKSVFSCPGTGHRVVLVDFG 178 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 AK GILREL R CDVVVVP++VTA+EIR + PDGI LSNGPGDPKDVP AV+ I E+LG Sbjct: 179 AKHGILRELTKRNCDVVVVPYNVTAEEIRLIQPDGILLSNGPGDPKDVPQAVEMIREILG 238 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 EYP+FGICLGHQLFALA GADT K+KFGHRGGNHPVKEL +GR +ITSQNH Y V E+S+ Sbjct: 239 EYPLFGICLGHQLFALASGADTTKMKFGHRGGNHPVKELPTGRTYITSQNHSYAVKEDSL 298 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHK-A 359 T+LEVTHI ND T+EG++H AFSVQYHPEAAPGP+DS YLFD+FL M+ K Sbjct: 299 AGTELEVTHIALNDGTIEGVRHAAKNAFSVQYHPEAAPGPYDSGYLFDQFLAMMETAKEE 358 Query: 360 KTPAGSR 366 KT A +R Sbjct: 359 KTHAKTR 365 >A6CPR6.1 A6CPR6_9BACI Carbamoyl-phosphate synthase small subunit EC=6.3.5.5 Length = 364 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 226/360 (62%), Positives = 281/360 (78%), Gaps = 2/360 (0%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ +L+L DGT+FTG FGAE GEVVFNTG+TGYQE+LSDPSYCGQI+T+TYPLIGN Sbjct: 2 MKRQLILDDGTVFTGEGFGAETSSVGEVVFNTGMTGYQEILSDPSYCGQIITLTYPLIGN 61 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI RDDFES+ P + GF+VR PSNWR+E +++DLLK GIPG++EIDTRMLTR I Sbjct: 62 YGINRDDFESISPAIKGFIVREEADFPSNWRSESTLNDLLKAKGIPGLAEIDTRMLTRKI 121 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R +GTMK ++ + EE++ + T + NQV + ST AY SPG R+VLVD+G Sbjct: 122 REHGTMKGMICSIEVDKEEVLHKIRATELP--TNQVKQVSTKTAYPSPGRGFRVVLVDFG 179 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 K GILRELN R CDV+VVP++ TA+EI+ LNPDGI LSNGPGDPKDVP A++ I+E LG Sbjct: 180 MKHGILRELNKRDCDVIVVPYNTTAEEIQALNPDGIMLSNGPGDPKDVPEAIEMINETLG 239 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 + P+FGICLGHQLFALA G DT K+KFGHRG NHPVK+L +G+ ITSQNHGY+V+E+S+ Sbjct: 240 KIPLFGICLGHQLFALASGGDTFKMKFGHRGSNHPVKDLATGKVAITSQNHGYSVDEDSL 299 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 +T LEVTHI ND T+EGLKH PAF+VQYHPEA+PGP D++ LFD+F+ M+ K K Sbjct: 300 IETRLEVTHIGLNDGTIEGLKHLDLPAFTVQYHPEASPGPEDANGLFDQFMTMMEAEKRK 359 >C5D8P9.1 C5D8P9_9BACI Carbamoyl-phosphate synthase, small subunit Length = 364 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 226/360 (62%), Positives = 279/360 (77%), Gaps = 2/360 (0%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ +L+L+DGT F G AFG+ + GEVVFNTG+TGYQE+L+DPSYCGQIVTMTYPLIGN Sbjct: 1 MKRQLVLEDGTFFIGDAFGSTEKMVGEVVFNTGMTGYQEILTDPSYCGQIVTMTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI DDFES+ P VHGF+V+ PSNWR E ++D LKE IPG+S IDTR LTRII Sbjct: 61 YGINHDDFESIEPHVHGFIVKEVCDSPSNWRNEMTLDQYLKEKRIPGLSGIDTRKLTRII 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R YGT+K ++ + V+E++E + T E R+QV R ST + Y SPG RIVLVD+G Sbjct: 121 RKYGTLKGMICDLDASVQEVVEYL--KTTELPRDQVKRVSTKSPYPSPGRGYRIVLVDFG 178 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 K GILRELN R CDV+V+P++ T +++ RL+PDG+ LSNGPGDPKDVP A++ I +LG Sbjct: 179 MKHGILRELNKRNCDVIVLPYNATEEDVLRLHPDGVMLSNGPGDPKDVPEAIEMIRGILG 238 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 + P+FGICLGHQLFALACGADTEK+KFGHRG NHPVK L +G+ ITSQNH YTV +ES+ Sbjct: 239 KVPLFGICLGHQLFALACGADTEKMKFGHRGSNHPVKHLATGKVAITSQNHSYTVKKESL 298 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 + T LEVTHI ND TVEGL+H YPAF+VQYHPEA+PGP D + LFD F++MI + K K Sbjct: 299 QHTRLEVTHIALNDGTVEGLRHLDYPAFTVQYHPEASPGPEDDNSLFDEFIEMIREFKKK 358 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,428,198,556 Number of extensions: 103608074 Number of successful extensions: 289977 Number of sequences better than 1.0e-05: 4218 Number of HSP's gapped: 281453 Number of HSP's successfully gapped: 4362 Length of query: 392 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 254 Effective length of database: 1,760,596,133 Effective search space: 447191417782 Effective search space used: 447191417782 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)