BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0015.p (1073 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGB8.1 B3KGB8_9BACI Carbamoyl-phosphate synthase, large subunit 1808 0.0 C0ZG39.1 C0ZG39_BREBN Carbamoyl-phosphate synthase large chain E... 1558 0.0 C5D8Q0.1 C5D8Q0_9BACI Carbamoyl-phosphate synthase, large subunit 1437 0.0 A8FD17.1 A8FD17_BACP2 Carbamoyl-phosphate synthase (Glutamine-hy... 1434 0.0 B1DKK8.1 B1DKK8_9BACL Carbamoyl-phosphate synthase, large subunit 1431 0.0 >B3KGB8.1 B3KGB8_9BACI Carbamoyl-phosphate synthase, large subunit Length = 1068 Score = 1808 bits (4684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 886/1068 (82%), Positives = 961/1068 (89%), Gaps = 1/1068 (0%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 MPK++ LKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEG+EVVLINSNPATIMTDTNM Sbjct: 1 MPKHDTLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGMEVVLINSNPATIMTDTNM 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 ADKVYIEPITL+FVT IIRQERPD NMAVELARAG+LEQENVKLLGTQL Sbjct: 61 ADKVYIEPITLDFVTQIIRQERPDGLLPTLGGQTGLNMAVELARAGILEQENVKLLGTQL 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 SIEKAEDRDLFRELMREL+QPVPESTI+T++EEA+ FA IGYP+IVRPAYTLGGTGGG Sbjct: 121 ESIEKAEDRDLFRELMRELDQPVPESTIVTTLEEALEFANEIGYPVIVRPAYTLGGTGGG 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 IC EEELRETV +G+RYSPI QCL+EKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV Sbjct: 181 ICATEEELRETVSSGLRYSPITQCLIEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDP SYQYYVIEVN Sbjct: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPNSYQYYVIEVN 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 PRVSRSSALASKATGYPIAKMAAKIA+GYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW Sbjct: 301 PRVSRSSALASKATGYPIAKMAAKIAMGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 PFDKFI+ANRKLGTQMKATGEVMAIGRTFEESIHKA+RSLEIG+HR L GA +L D VL Sbjct: 361 PFDKFIHANRKLGTQMKATGEVMAIGRTFEESIHKAVRSLEIGVHRLYLKGANELSDEVL 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 + RL KADDER+FLIAEAFRRGY LQ+IQD+T +DWWFL KIE L+ +E+ IRSEA+L+ Sbjct: 421 QQRLIKADDERMFLIAEAFRRGYDLQQIQDLTKIDWWFLDKIERLIKYEDHIRSEASLTY 480 Query: 481 ETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFXX 540 ETLY+AKR GFTDRAIAE+RAEG+ T+ES + LR + GL PV+KMVDTCAAEF Sbjct: 481 ETLYEAKRLGFTDRAIAELRAEGKASTHTTEES-IGFLRREHGLRPVYKMVDTCAAEFEA 539 Query: 541 XXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 600 VI S K+KVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII Sbjct: 540 TTPYYYSTYETENEVIESAKEKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 599 Query: 601 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXGV 660 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVI QE PIGVIVQFGGQT GV Sbjct: 600 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTAINLAEPLSKAGV 659 Query: 661 NILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSYV 720 ILGTSL+SIDEAEDRKKFEALL+RL+IAQPKGKTV ++D+AVETAQSLGYPVLVRPSYV Sbjct: 660 KILGTSLESIDEAEDRKKFEALLSRLEIAQPKGKTVTSVDDAVETAQSLGYPVLVRPSYV 719 Query: 721 LGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIPGIME 780 LGGRAMEIVY+D+ELLSYM EAVK+NP+HPVLIDRYM+GKEVEVDAICDGETV+IPGIME Sbjct: 720 LGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAICDGETVLIPGIME 779 Query: 781 HVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNEVYVI 840 HVERAGVHSGDSIAVYPPQYL + LK KIA+ITIKIAKEL T GLVNIQFVIY+NEVYVI Sbjct: 780 HVERAGVHSGDSIAVYPPQYLSQDLKDKIAEITIKIAKELNTRGLVNIQFVIYKNEVYVI 839 Query: 841 EVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSVKVPVFSFA 900 EVNPRSSRTVPFLSKVTGIPMA+LAT+ I+GGKLK+ GY EG+WPES++VSVKVPVFSFA Sbjct: 840 EVNPRSSRTVPFLSKVTGIPMANLATQAIMGGKLKDLGYEEGMWPESEHVSVKVPVFSFA 899 Query: 901 KLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPTTGAIIVTVADKDKAEAV 960 KLRRVEPTLGPEMKSTGEVMGRD YAKALYKGLIGAGMKIP+TGAII T+ADKDKAEA Sbjct: 900 KLRRVEPTLGPEMKSTGEVMGRDVKYAKALYKGLIGAGMKIPSTGAIIATIADKDKAEAA 959 Query: 961 ELMKGFHAMGYKIIATGGTALALEQAGLNVMNVNKLDEGEPTILDLIRSGQANFVFNTLT 1020 L+KGFH +GYKIIATGGTA +L++AGL+V +NKL EG P ILD+IR+G+ANFVFNTLT Sbjct: 960 ALLKGFHKLGYKIIATGGTAASLKEAGLDVTTINKLSEGTPNILDMIRTGEANFVFNTLT 1019 Query: 1021 KGKTPERDGFRIRREAVENGVVCMTSLDTVTALLRMLQTINFSSQSMP 1068 KGKTP+RDGFRIRREAVENGVVCMTSLDTV LL ML+TINFSS++MP Sbjct: 1020 KGKTPQRDGFRIRREAVENGVVCMTSLDTVRELLTMLETINFSSEAMP 1067 >C0ZG39.1 C0ZG39_BREBN Carbamoyl-phosphate synthase large chain EC=6.3.5.5 Length = 1070 Score = 1558 bits (4034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 755/1069 (70%), Positives = 881/1069 (82%), Gaps = 10/1069 (0%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 MPK + LKKILVIGSGPIVIGQAAEFDYAGTQAC+ALKEEG+EVVLINSNPATIMTDTNM Sbjct: 1 MPKQDNLKKILVIGSGPIVIGQAAEFDYAGTQACEALKEEGMEVVLINSNPATIMTDTNM 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 ADKVYIEPIT EFV +IRQE+PD NMAV L+ AGVLEQENVKLLGT+L Sbjct: 61 ADKVYIEPITPEFVARVIRQEKPDGLLPTLGGQTGLNMAVALSEAGVLEQENVKLLGTKL 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 SI++AEDRDLFR LM EL +PVPES I++++EEA+ FA IGYP+IVRPAYTLGGTGGG Sbjct: 121 ESIKQAEDRDLFRSLMNELGEPVPESVIVSTIEEAVDFANEIGYPIIVRPAYTLGGTGGG 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 ICD+EE LRE V +G++YSPI QCL+EKSIAGMKE+EYEVMRDANDNCIVVCNMEN DPV Sbjct: 181 ICDDEETLREIVASGLKYSPITQCLIEKSIAGMKEIEYEVMRDANDNCIVVCNMENIDPV 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 GVHTGDSIVVAPSQTL+DREYQMLR+++L IIRAL IEGGCNVQ+ALDP S+QYYVIEVN Sbjct: 241 GVHTGDSIVVAPSQTLADREYQMLRTSALNIIRALGIEGGCNVQYALDPHSFQYYVIEVN 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 PRVSRSSALASKATGYPIAKMAAKIA+GYTLDE+ NPVTGQTYACFEPTLDYIVSKIPRW Sbjct: 301 PRVSRSSALASKATGYPIAKMAAKIAIGYTLDELKNPVTGQTYACFEPTLDYIVSKIPRW 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 PFDKF ANRKLGTQMKATGEVMAIGRTFEESI KAIRSLEIG + ++ GA ++ + L Sbjct: 361 PFDKFQSANRKLGTQMKATGEVMAIGRTFEESIMKAIRSLEIGSYHIEIKGAGEISEDDL 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 + RL ADDERLFL+AEA RRG+ ++++ +T +D +FL KI ++ FE + L+ Sbjct: 421 KARLVHADDERLFLLAEALRRGWTIEQLHSLTKIDLFFLHKIHKMIAFEAQLAK--GLTS 478 Query: 481 ETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFXX 540 E LY+AKR GFTDR IAE+ E E V +R ++G VPV+KMVDTCAAEF Sbjct: 479 EKLYEAKRMGFTDRKIAELCGE--------TEEAVHAMRKEKGFVPVYKMVDTCAAEFEA 530 Query: 541 XXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 600 I + K++V+VLGSGPIRIGQGIEFDY+TVHAVWA+++AGYEAVII Sbjct: 531 QTPYYYSAYEVEDERIETGKKRVVVLGSGPIRIGQGIEFDYATVHAVWALREAGYEAVII 590 Query: 601 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXGV 660 NNNPETVSTDFNTSDRLYFEPL+ EDVMN++ E P GVIVQFGGQT G+ Sbjct: 591 NNNPETVSTDFNTSDRLYFEPLYIEDVMNILDVEKPEGVIVQFGGQTAINLADKLTARGI 650 Query: 661 NILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSYV 720 ILGTSL++ID AE+R+KFEALL L+IAQP GKTV ++D+AV A+ LG+PVLVRPSYV Sbjct: 651 KILGTSLENIDAAENREKFEALLRELEIAQPPGKTVTSVDQAVVAAEGLGFPVLVRPSYV 710 Query: 721 LGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIPGIME 780 LGGRAMEIVYN ELL YM +AVKVNP+HPVL+DRYM+G E EVDAICDGE V+IPGIME Sbjct: 711 LGGRAMEIVYNQPELLEYMEKAVKVNPDHPVLVDRYMVGIEAEVDAICDGENVLIPGIME 770 Query: 781 HVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNEVYVI 840 H+ERAGVHSGDSIAVYPPQ L + +K ++ D+T K+A+ L+ GL+NIQFVIY++ YVI Sbjct: 771 HIERAGVHSGDSIAVYPPQSLSQAIKDELIDMTTKLARALQIKGLLNIQFVIYKDRPYVI 830 Query: 841 EVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSVKVPVFSFA 900 EVNPRSSRTVPFLSKVTGIPMA++ATK ILG + E+G+T G PE VSVKVPVFSFA Sbjct: 831 EVNPRSSRTVPFLSKVTGIPMANIATKAILGHSIMEQGFTPGYHPEESMVSVKVPVFSFA 890 Query: 901 KLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPTTGAIIVTVADKDKAEAV 960 KLRRV+ TLGPEMKSTGEVMGR+ AKALYKGL+ AGM IPT G ++VTVADKDK EA+ Sbjct: 891 KLRRVDITLGPEMKSTGEVMGRESTLAKALYKGLVAAGMNIPTQGTLLVTVADKDKEEAL 950 Query: 961 ELMKGFHAMGYKIIATGGTALALEQAGLNVMNVNKLDEGEPTILDLIRSGQANFVFNTLT 1020 +++K F +G+K++AT GTA LEQAGL V V+KL EG P +LD+I +G+AN V NTLT Sbjct: 951 DIVKRFRHLGFKLMATAGTADYLEQAGLQVTRVSKLSEGTPNLLDVIHTGEANIVLNTLT 1010 Query: 1021 KGKTPERDGFRIRREAVENGVVCMTSLDTVTALLRMLQTINFSSQSMPA 1069 KGKTP+RDGFRIRREAVENG VC+TSLDT +ALL +L+TI FS+++MPA Sbjct: 1011 KGKTPQRDGFRIRREAVENGAVCLTSLDTASALLHVLETITFSTEAMPA 1059 >C5D8Q0.1 C5D8Q0_9BACI Carbamoyl-phosphate synthase, large subunit Length = 1065 Score = 1437 bits (3721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 701/1067 (65%), Positives = 849/1067 (79%), Gaps = 9/1067 (0%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 MPK + ++ ILVIGSGPIVIGQAAEFDYAGTQAC ALKEEG +V+L+NSNPATIMTDT + Sbjct: 1 MPKRQDIETILVIGSGPIVIGQAAEFDYAGTQACLALKEEGYKVILVNSNPATIMTDTEI 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 ADKVY+EP+TLEFV+ IIR+ERPD N+AVELAR GVL + V++LGT+L Sbjct: 61 ADKVYMEPLTLEFVSRIIRKERPDAILPTLGGQTGLNLAVELARTGVLAECGVEILGTKL 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 +IEKAEDR+ FR LM EL +PVPES II S+EEA F +GYP+IVRPA+TLGGTGGG Sbjct: 121 EAIEKAEDREQFRALMNELGEPVPESEIIHSLEEAYAFVEKVGYPVIVRPAFTLGGTGGG 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 IC NEEEL + V G++ SP+ QCL+EKSIAG KE+EYEVMRDANDN IVVCNMEN DPV Sbjct: 181 ICKNEEELIDIVSTGLKLSPVHQCLLEKSIAGYKEIEYEVMRDANDNAIVVCNMENIDPV 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 G+HTGDSIVVAPSQTLSDREYQ+LR+ASL+IIRAL IEGGCNVQ ALDP S+ YYVIEVN Sbjct: 241 GIHTGDSIVVAPSQTLSDREYQLLRNASLRIIRALGIEGGCNVQLALDPHSFHYYVIEVN 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 PRVSRSSALASKATGYPIAK+AAKIA+G TLDEI+NPVTG+TYACFEPTLDY+V+KIPR+ Sbjct: 301 PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEIINPVTGKTYACFEPTLDYVVTKIPRF 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 PFDKF ANR+LGTQMKATGEVMAIGRT EES+ KA+RSLE ++ +L AE + D ++ Sbjct: 361 PFDKFESANRRLGTQMKATGEVMAIGRTLEESLLKAVRSLETNVYHLELKDAENVSDELI 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 R+ KA DERLF IAEA RRG+ +++I + + +D +FL+KIE +V FE V+R + Sbjct: 421 EKRIRKAGDERLFYIAEALRRGFTVEQIHEWSQIDRFFLTKIENIVRFENVVR-DYKGDI 479 Query: 481 ETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFXX 540 E L +AK GF+D AIA+ L E +V +R Q G++PV+KMVDTCAAEF Sbjct: 480 EVLRKAKEMGFSDVAIAK--------LWNKSERDVYEMRKQAGIIPVYKMVDTCAAEFES 531 Query: 541 XXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 600 + +D++ V+VLGSGPIRIGQGIEFDY+TVH+VWAI++AGYEA+II Sbjct: 532 ETPYYYSTYEDENESVVTDRESVVVLGSGPIRIGQGIEFDYATVHSVWAIKEAGYEAIII 591 Query: 601 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXGV 660 NNNPETVSTDF+ SD+LYFEPL EDVM+VI E PIGVIVQFGGQT GV Sbjct: 592 NNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEKPIGVIVQFGGQTAINLAAELAARGV 651 Query: 661 NILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSYV 720 ILGTSL+ +D AEDR KFE L+ L I QP+GKT +++EAV A+ +GYPVLVRPSYV Sbjct: 652 RILGTSLEDLDRAEDRDKFEQTLSELGIPQPQGKTAFSVEEAVRIAEEIGYPVLVRPSYV 711 Query: 721 LGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIPGIME 780 LGGRAMEIVY + ELL YM AVKVNP+HPVLIDRY++GKE+EVDAI DGETV IPGIME Sbjct: 712 LGGRAMEIVYQEEELLHYMEHAVKVNPQHPVLIDRYLIGKEIEVDAISDGETVFIPGIME 771 Query: 781 HVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNEVYVI 840 H+ERAGVHSGDSIAVYPPQ L + ++QKI D TIK+A+ L+ VGL+NIQFV+YQ EVYV+ Sbjct: 772 HIERAGVHSGDSIAVYPPQTLTKDIQQKIVDYTIKLARGLRIVGLLNIQFVMYQGEVYVL 831 Query: 841 EVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSVKVPVFSFA 900 EVNPRSSRTVPFLSK+TG+PMA++ATK ILG KL E GY GL ES+ V VK PVFSFA Sbjct: 832 EVNPRSSRTVPFLSKITGVPMANIATKVILGAKLAELGYETGLRQESEGVYVKAPVFSFA 891 Query: 901 KLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPTTGAIIVTVADKDKAEAV 960 KLR V+ +LGPEMKSTGEV+G+D + KALYKGL+ +G+ I GA+++TVADKDK +A+ Sbjct: 892 KLRNVDISLGPEMKSTGEVIGKDVTFEKALYKGLVASGIHIRPYGAVLLTVADKDKEDAI 951 Query: 961 ELMKGFHAMGYKIIATGGTALALEQAGLNVMNVNKLDEGEPTILDLIRSGQANFVFNTLT 1020 EL + F+ +GY+++AT GTA AL+ A + V VNK+ P ILD+IR G+A V NTLT Sbjct: 952 ELARRFYQIGYQLLATNGTAEALKAADIPVTVVNKIHSASPNILDVIRQGKAQVVINTLT 1011 Query: 1021 KGKTPERDGFRIRREAVENGVVCMTSLDTVTALLRMLQTINFSSQSM 1067 KGK PE DGFRIRREAVENG+ C+TSLDT A+L++++++ FS+ +M Sbjct: 1012 KGKQPESDGFRIRREAVENGIPCLTSLDTAKAMLQVIESMTFSTTAM 1058 >A8FD17.1 A8FD17_BACP2 Carbamoyl-phosphate synthase (Glutamine-hydrolyzing) large subunit EC=6.3.5.5 Length = 1071 Score = 1434 bits (3711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 702/1068 (65%), Positives = 843/1068 (78%), Gaps = 9/1068 (0%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 MPK +KKILVIGSGPI+IGQAAEFDYAGTQAC ALKEEG EVVL+NSNPATIMTDT M Sbjct: 1 MPKRVDIKKILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVVLVNSNPATIMTDTEM 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 ADKVYIEP+T EF+T IIR+ERPD N+AVEL+ GVL + V++LGT+L Sbjct: 61 ADKVYIEPLTPEFLTRIIRKERPDAILPTLGGQTGLNLAVELSDLGVLAECGVEVLGTKL 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 +I+KAEDRDLFR LM EL +PVPES II ++EEAM F IG+P+IVRPAYTLGGTGGG Sbjct: 121 SAIQKAEDRDLFRNLMNELNEPVPESEIIHNLEEAMAFTNQIGFPVIVRPAYTLGGTGGG 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 IC NE+EL+E V+ G++ SP+ QCL+EKSIAG KE+EYEVMRD+ D+ IVVCNMENFDPV Sbjct: 181 ICTNEQELKEIVENGLKLSPVTQCLLEKSIAGFKEIEYEVMRDSGDHAIVVCNMENFDPV 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 G+HTGDSIVVAPSQTLSDREYQ+LR+ SLK+IRAL IEGGCNVQ A+DP S+QYY+IEVN Sbjct: 241 GIHTGDSIVVAPSQTLSDREYQLLRNVSLKLIRALGIEGGCNVQLAIDPDSFQYYIIEVN 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 PRVSRSSALASKATGYPIAK+AAKIA+G TLDE++NPVTG+TYA FEP LDYIVSKIPRW Sbjct: 301 PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMMNPVTGKTYAAFEPALDYIVSKIPRW 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 PFDKF ANR+LGTQMKATGEVMAIGRT EES+ KA+RSLE +H +L + + VL Sbjct: 361 PFDKFESANRRLGTQMKATGEVMAIGRTLEESLLKAVRSLEADVHHIELKDEADITNEVL 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 R+ KA DERLF IAEA RRGY +++I + + +D++FL K+EG++ FE+ ++ E +P Sbjct: 421 EKRIIKAGDERLFYIAEALRRGYTVEQIHEFSKIDYFFLHKLEGIIAFEKTLK-ENKGNP 479 Query: 481 ETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFXX 540 + L +AK KGF+D I+ E++V LR + G+VPV+KMVDTCAAEF Sbjct: 480 DVLKEAKEKGFSDIYISREW--------NMNEADVYTLRQETGIVPVYKMVDTCAAEFES 531 Query: 541 XXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 600 +DK+ VIVLGSGPIRIGQG+EFDY+TVH+VWAI++AGYEA+II Sbjct: 532 ETPYFYSTYENENESERTDKKSVIVLGSGPIRIGQGVEFDYATVHSVWAIKQAGYEAIII 591 Query: 601 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXGV 660 NNNPETVSTDF+ SD+LYFEPL EDVM++I E P GV+VQFGGQT GV Sbjct: 592 NNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTAINLADELSNRGV 651 Query: 661 NILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSYV 720 ILGTSL+ +D AE+R KFE L L + QPKGKT ++ EAV A +GYPVLVRPSYV Sbjct: 652 KILGTSLEDLDRAENRDKFEQTLETLGVPQPKGKTATSVPEAVAIANQIGYPVLVRPSYV 711 Query: 721 LGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIPGIME 780 LGGRAMEIVY +TELL YM AVKVNP+HPVLID+Y+ GKE+EVDA+ DGETVVIPGIME Sbjct: 712 LGGRAMEIVYQETELLHYMENAVKVNPQHPVLIDKYLTGKEIEVDAVSDGETVVIPGIME 771 Query: 781 HVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNEVYVI 840 H+ERAGVHSGDSIAVYPPQ L E +K KIA+ TIK+AK L +GL+NIQFV+ + EV+V+ Sbjct: 772 HIERAGVHSGDSIAVYPPQTLSEEIKAKIAEYTIKLAKGLNIIGLLNIQFVLSKGEVFVL 831 Query: 841 EVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSVKVPVFSFA 900 EVNPRSSRTVPFLSK+TGIPMA+LATK ILG KLK GY EGL E + V VKVPVFSFA Sbjct: 832 EVNPRSSRTVPFLSKITGIPMANLATKVILGEKLKNYGYEEGLHTEQEGVYVKVPVFSFA 891 Query: 901 KLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPTTGAIIVTVADKDKAEAV 960 KLRRV+ TLGPEMKSTGEVMG+D K+LYKGLI +G++IP G +++TVADKDK E + Sbjct: 892 KLRRVDITLGPEMKSTGEVMGKDVTIEKSLYKGLIASGIQIPKDGTVLLTVADKDKEEGL 951 Query: 961 ELMKGFHAMGYKIIATGGTALALEQAGLNVMNVNKLDEGEPTILDLIRSGQANFVFNTLT 1020 E+ + FH++GY I+AT GTA L+QA + V K+ E +LD+IR+G+A FV NTLT Sbjct: 952 EIARRFHSIGYHILATEGTANYLKQASIPSSVVGKIGEEGKNLLDVIRNGEAQFVINTLT 1011 Query: 1021 KGKTPERDGFRIRREAVENGVVCMTSLDTVTALLRMLQTINFSSQSMP 1068 KGK P RDGFRIRREAVENGV C+TSLDT A+LR+L+++ F + MP Sbjct: 1012 KGKQPARDGFRIRREAVENGVACLTSLDTAEAILRVLESMTFRADEMP 1059 >B1DKK8.1 B1DKK8_9BACL Carbamoyl-phosphate synthase, large subunit Length = 887 Score = 1431 bits (3704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 705/878 (80%), Positives = 764/878 (87%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 MPKN +LKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEG EVVLINSNPATIMTDTNM Sbjct: 1 MPKNNELKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGYEVVLINSNPATIMTDTNM 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 ADKVYIEPITL+FV+ IIRQERPD NMAVELARAGVLEQENVKLLGTQL Sbjct: 61 ADKVYIEPITLDFVSQIIRQERPDGLLPTLGGQTGLNMAVELARAGVLEQENVKLLGTQL 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 +IEKAEDRDLFR+LMRELEQPVPES I+T+VEEA+ FA IGYP+IVRPAYTLGGTGGG Sbjct: 121 TAIEKAEDRDLFRDLMRELEQPVPESVIVTTVEEAVTFANEIGYPIIVRPAYTLGGTGGG 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 IC NEEELRETV +GIRYSPI QCLVEKSIAGMKEVEYEVMRDAN+NCIVVCNMENFDPV Sbjct: 181 ICGNEEELRETVASGIRYSPISQCLVEKSIAGMKEVEYEVMRDANNNCIVVCNMENFDPV 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDP S+QYYVIEVN Sbjct: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPHSFQYYVIEVN 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 PRVSRSSALASKATGYPIAKMAAKIA+GYTLDEIVNPVTGQTYA FEPTLDYIVSKIPRW Sbjct: 301 PRVSRSSALASKATGYPIAKMAAKIAIGYTLDEIVNPVTGQTYAMFEPTLDYIVSKIPRW 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 PFDKF+ ANRKLGTQMKATGEVMAIGRTFEES+HKA+RSLEIG HR L A L+D+VL Sbjct: 361 PFDKFVNANRKLGTQMKATGEVMAIGRTFEESMHKAVRSLEIGTHRIHLKEAVTLDDAVL 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 +TRLAK DDER+FL+AEAFRRGY LQ+IQD+T +DWWFL KI+G+V FE+ IR E LSP Sbjct: 421 QTRLAKPDDERMFLVAEAFRRGYKLQDIQDLTKIDWWFLDKIQGIVEFEDQIRREVALSP 480 Query: 481 ETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFXX 540 ETLY+AKRKGF+DR+IAEIR EG P T E ++R R + G PV+KMVDTCAAEF Sbjct: 481 ETLYEAKRKGFSDRSIAEIRKEGFPSGSHTNEHDIRAFRKELGFTPVYKMVDTCAAEFEA 540 Query: 541 XXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 600 V S+K+KV+VLGSGPIRIGQGIEFDYSTVHAVWAIQ AGYEAVII Sbjct: 541 STPYYYSTYETENEVTESNKEKVLVLGSGPIRIGQGIEFDYSTVHAVWAIQNAGYEAVII 600 Query: 601 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXGV 660 NNNPETVSTDF+TSDRLYFEPLFFEDVMNVI QE PIGVIVQFGGQT GV Sbjct: 601 NNNPETVSTDFSTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTAINLAAPLTKAGV 660 Query: 661 NILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSYV 720 ILG+SL+SID AEDRKKFEALL L+IAQP+G TV ++D+AVETAQ LGYPVLVRPSYV Sbjct: 661 RILGSSLESIDTAEDRKKFEALLRNLNIAQPEGSTVTSVDQAVETAQKLGYPVLVRPSYV 720 Query: 721 LGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIPGIME 780 LGGRAMEIVY+D ELLSYM AVK+NPEHPVLIDRYMLGKE EVDAICDGETV+IPGIME Sbjct: 721 LGGRAMEIVYSDEELLSYMEVAVKINPEHPVLIDRYMLGKEAEVDAICDGETVLIPGIME 780 Query: 781 HVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNEVYVI 840 H+ERAGVHSGDSIAVYPPQ L + +K +I DIT+ IAK LK +GLVNIQFVI+ +VYVI Sbjct: 781 HIERAGVHSGDSIAVYPPQSLSDDIKNQIVDITVNIAKALKVIGLVNIQFVIHNEKVYVI 840 Query: 841 EVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEG 878 EVNPRSSRTVPFLSKVT +PMA+LATK ILG KL + G Sbjct: 841 EVNPRSSRTVPFLSKVTDLPMANLATKAILGTKLADLG 878 Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/394 (37%), Positives = 224/394 (56%), Gaps = 16/394 (4%) Query: 557 HSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVIINNNPETVSTDFNTSDR 616 +++ +K++V+GSGPI IGQ EFDY+ A A+++ GYE V+IN+NP T+ TD N +D+ Sbjct: 4 NNELKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGYEVVLINSNPATIMTDTNMADK 63 Query: 617 LYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXGV------NILGTSLDSI 670 +Y EP+ + V +I QE P G++ GGQT GV +LGT L +I Sbjct: 64 VYIEPITLDFVSQIIRQERPDGLLPTLGGQTGLNMAVELARAGVLEQENVKLLGTQLTAI 123 Query: 671 DEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSYVLGGRAMEIVY 730 ++AEDR F L+ L+ P+ V ++EAV A +GYP++VRP+Y LGG I Sbjct: 124 EKAEDRDLFRDLMRELEQPVPESVIVTTVEEAVTFANEIGYPIIVRPAYTLGGTGGGICG 183 Query: 731 NDTELLSYMAEAVKVNPEHPVLIDRYMLG-KEVEVDAICDGET-VVIPGIMEHVERAGVH 788 N+ EL +A ++ +P L+++ + G KEVE + + D ++ ME+ + GVH Sbjct: 184 NEEELRETVASGIRYSPISQCLVEKSIAGMKEVEYEVMRDANNNCIVVCNMENFDPVGVH 243 Query: 789 SGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVI--YQNEVYVIEVNPRS 846 +GDSI V P Q L + Q + ++KI + L G N+QF + + + YVIEVNPR Sbjct: 244 TGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPHSFQYYVIEVNPRV 303 Query: 847 SRTVPFLSKVTGIPMAHLATKTILGGKLKE-----EGYTEGLW-PESDYVSVKVPVFSFA 900 SR+ SK TG P+A +A K +G L E G T ++ P DY+ K+P + F Sbjct: 304 SRSSALASKATGYPIAKMAAKIAIGYTLDEIVNPVTGQTYAMFEPTLDYIVSKIPRWPFD 363 Query: 901 KLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGL 934 K LG +MK+TGEVM + + ++++K + Sbjct: 364 KFVNANRKLGTQMKATGEVMAIGRTFEESMHKAV 397 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,914,618,432 Number of extensions: 245858273 Number of successful extensions: 712032 Number of sequences better than 1.0e-05: 5109 Number of HSP's gapped: 676135 Number of HSP's successfully gapped: 7431 Length of query: 1073 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 926 Effective length of database: 1,675,806,998 Effective search space: 1551797280148 Effective search space used: 1551797280148 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 137 (57.4 bits)