BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0014.p (310 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGB9.1 B3KGB9_9BACI Orotidine 5'-phosphate decarboxylase EC=4.... 326 2e-87 B1DKK6.1 B1DKK6_9BACL Orotidine 5'-phosphate decarboxylase EC=4.... 288 4e-76 B0MVE8.1 B0MVE8_9BACT Orotidine 5'-phosphate decarboxylase EC=4.... 207 1e-51 C2KYS3.1 C2KYS3_9FIRM Orotidine-5'-phosphate decarboxylase EC=4.... 206 2e-51 B7B098.1 B7B098_9FIRM Orotidine 5'-phosphate decarboxylase EC=4.... 205 3e-51 >B3KGB9.1 B3KGB9_9BACI Orotidine 5'-phosphate decarboxylase EC=4.1.1.23 Length = 245 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 161/240 (67%), Positives = 188/240 (78%) Query: 71 EEMAGRLMVALDVPDVEQASLLIDKLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVFL 130 EMAGRLMVALD PD E+A L+ +LEGIPCYMKVGMQLFYAAGP F++ELKA+GYSVFL Sbjct: 6 NEMAGRLMVALDYPDAERAQALVRQLEGIPCYMKVGMQLFYAAGPDFVKELKAKGYSVFL 65 Query: 131 DVKMHDIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLII 190 DVKMHDIPNTV+GG+ S+T LGVDMFNVH V+ P L +P II Sbjct: 66 DVKMHDIPNTVKGGSHSVTRLGVDMFNVHAGGGALMMQAAKAGAEAAVADTPGLAMPTII 125 Query: 191 AVTQLTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPDF 250 AVTQLTST+Q++MN EIGI G V DTVVRYA+LA ++GLHGVVAS E I +ACG DF Sbjct: 126 AVTQLTSTNQDVMNNEIGIPGQVEDTVVRYAELARQSGLHGVVASSLEVEAIRSACGKDF 185 Query: 251 RTVTPGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQAALTIIEEMSQA 310 +TV PGIRPAGA + DQ+RV+TPG+AIR+GSH+LVVGRPIT + +PRQAA IIEEM QA Sbjct: 186 KTVIPGIRPAGADIGDQARVLTPGEAIRKGSHYLVVGRPITESHNPRQAAEQIIEEMIQA 245 >B1DKK6.1 B1DKK6_9BACL Orotidine 5'-phosphate decarboxylase EC=4.1.1.23 Length = 241 Score = 288 bits (737), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 142/238 (59%), Positives = 176/238 (73%), Gaps = 2/238 (0%) Query: 70 REEMAGRLMVALDVPDVEQASLLIDKLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVF 129 RE+ AG++MVALD D A L+ +LEGIPCYMKVGMQLFYAAGP F+ ELK RGY VF Sbjct: 5 REQAAGKVMVALDYADAASAKRLLSELEGIPCYMKVGMQLFYAAGPSFVEELKKRGYRVF 64 Query: 130 LDVKMHDIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLI 189 LDVKMHDIPNTV+GG+ S+T LGVDMFNVH ++ + P I Sbjct: 65 LDVKMHDIPNTVKGGSNSVTKLGVDMFNVHAAGGAAMMEAAVEGAEAALASGQAR--PAI 122 Query: 190 IAVTQLTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPD 249 IAVTQLTST+ +++N EIGI+G+V VVRYA+LA AGL+GVVASP E VI +ACG Sbjct: 123 IAVTQLTSTNVQVLNEEIGIAGSVEQAVVRYAELAKRAGLNGVVASPLEVDVIKSACGTS 182 Query: 250 FRTVTPGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQAALTIIEEM 307 F+TVTPGIRP A+ +DQSR+MTP +A+ QG+ ++V+GRPITAAA PR+A +IIEE+ Sbjct: 183 FQTVTPGIRPTWAATNDQSRIMTPREALEQGTDYMVIGRPITAAASPREALESIIEEL 240 >B0MVE8.1 B0MVE8_9BACT Orotidine 5'-phosphate decarboxylase EC=4.1.1.23 Length = 235 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/233 (47%), Positives = 144/233 (61%), Gaps = 7/233 (3%) Query: 77 LMVALDVPDVEQASLLID--KLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVFLDVKM 134 +++A D E+ +D K E ++K+GM+LFYA GP +RE+K RG+ +FLD+K+ Sbjct: 6 VIIACDFSSAEETFRFLDLFKNEARKPFLKIGMELFYAEGPEIVREIKRRGHRIFLDLKL 65 Query: 135 HDIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLIIAVTQ 194 HDIPNTV+ L+ L VDM NVH P PL+IAVTQ Sbjct: 66 HDIPNTVKKAMAVLSRLDVDMCNVHAAGTIEMMRAAVEGLT-----RPDGTRPLLIAVTQ 120 Query: 195 LTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPDFRTVT 254 LTSTS+E M RE+ IS ++ DT+V+YA+ EAGL GVV SP EA ++ AACG +F TVT Sbjct: 121 LTSTSEERMQRELLISASINDTIVKYAQNTREAGLDGVVCSPLEAGMVKAACGKEFLTVT 180 Query: 255 PGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQAALTIIEEM 307 PG+R A + DQ RV TP +A GS ++VVGRPITAAADP A +EE Sbjct: 181 PGVRFADGEVADQVRVTTPARAREIGSDYIVVGRPITAAADPVAAYRRCVEEF 233 >C2KYS3.1 C2KYS3_9FIRM Orotidine-5'-phosphate decarboxylase EC=4.1.1.23 Length = 234 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/230 (49%), Positives = 145/230 (63%), Gaps = 10/230 (4%) Query: 73 MAGRLMVALDVPDVEQASLLID---KLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVF 129 M ++VALD P ++A +D K E P Y+KVGM+LFY+ GP +R++K RG+S+F Sbjct: 1 MGKDVIVALDFPTGKEALDFLDLFQKEERKP-YVKVGMELFYSEGPEIVRQIKKRGHSIF 59 Query: 130 LDVKMHDIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLI 189 LD+K+HDIPNTV+GG SL LGVDM NVH L H+P++ Sbjct: 60 LDLKLHDIPNTVKGGMASLKALGVDMTNVHASGGILMMKAGLE------GLSGGEHLPIL 113 Query: 190 IAVTQLTSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPD 249 IAVTQLTST Q MM E+ I TV + V+ Y + A AGLHGVV SP EA I G D Sbjct: 114 IAVTQLTSTDQRMMEEELLIPKTVKEVVLHYGENAKAAGLHGVVCSPHEAKEIHERIGAD 173 Query: 250 FRTVTPGIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQA 299 F TVTPG+R AG + DQ RVMTP +A + GS ++V+GRPIT A +P +A Sbjct: 174 FLTVTPGVRFAGGEVGDQKRVMTPEEAKKVGSDYIVMGRPITKAENPVEA 223 >B7B098.1 B7B098_9FIRM Orotidine 5'-phosphate decarboxylase EC=4.1.1.23 Length = 241 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 112/232 (48%), Positives = 146/232 (62%), Gaps = 2/232 (0%) Query: 76 RLMVALDVPDVEQASLLIDKLEGIPCYMKVGMQLFYAAGPGFIRELKARGYSVFLDVKMH 135 RL+VALD +E L++KL Y KVGM+LFY+ G +R L+ +G VFLD+K+H Sbjct: 8 RLIVALDFHTMEDVKALVEKLGDSVSYYKVGMELFYSVGGEVVRWLRGQGKHVFLDLKLH 67 Query: 136 DIPNTVRGGAESLTLLGVDMFNVHXXXXXXXXXXXXXXXXXXVSLHPSLHIPLIIAVTQL 195 DIPNTV GG SL LG D+ NVH + P +IA+T L Sbjct: 68 DIPNTVAGGLCSLMDLGADILNVHASGGYTMMKTAADRLHAAAE-ERGIPCPKLIAITVL 126 Query: 196 TSTSQEMMNREIGISGTVTDTVVRYAKLAAEAGLHGVVASPQEAAVIAAACGPDFRTVTP 255 TS +QE + +G + + D VVR AKLA AGL GVVASPQEAA+I ACG DF VTP Sbjct: 127 TSINQEDWD-GVGQTLPIQDAVVRLAKLAKSAGLDGVVASPQEAALIREACGADFLIVTP 185 Query: 256 GIRPAGASLDDQSRVMTPGQAIRQGSHFLVVGRPITAAADPRQAALTIIEEM 307 G+RPAG++++DQSR+ TP +A+ G+ LV+GRPI AA DP+ AA I++EM Sbjct: 186 GVRPAGSAINDQSRIATPAKALTNGASHLVIGRPIRAAEDPKAAAEAILKEM 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,597,378,102 Number of extensions: 58616106 Number of successful extensions: 159391 Number of sequences better than 1.0e-05: 1006 Number of HSP's gapped: 157967 Number of HSP's successfully gapped: 1044 Length of query: 310 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 175 Effective length of database: 1,788,859,178 Effective search space: 313050356150 Effective search space used: 313050356150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)