BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0012.p
         (54 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGC7.1 B3KGC7_9BACI Putative uncharacterized protein                100   5e-20
B1DKJ7.1 B1DKJ7_9BACL Putative uncharacterized protein                 79   9e-14

>B3KGC7.1 B3KGC7_9BACI Putative uncharacterized protein
          Length = 54

 Score =  100 bits (248), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 1  MNWIYFAKLFRTRFQAGCLAKRLEQDGWIYGYHDPRFVEIYRSRKGRYGVRFLP 54
          MNW+Y+ KL+ T+FQAGC AKRLEQDGW++GYHDPR VE+YRS+KGRYGVRFLP
Sbjct: 1  MNWVYYGKLYTTKFQAGCFAKRLEQDGWLFGYHDPRMVEVYRSKKGRYGVRFLP 54


>B1DKJ7.1 B1DKJ7_9BACL Putative uncharacterized protein
          Length = 54

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 44/53 (83%)

Query: 1  MNWIYFAKLFRTRFQAGCLAKRLEQDGWIYGYHDPRFVEIYRSRKGRYGVRFL 53
          M WIY+ +L+ T+FQAGCL +R+E D W+YGY  P+ +E++RSRKGRYGVRFL
Sbjct: 1  MKWIYWVRLYETKFQAGCLVRRMENDWWVYGYECPQEIEVFRSRKGRYGVRFL 53


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.333    0.149    0.522 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 347,165,161
Number of extensions: 9553580
Number of successful extensions: 24731
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 24735
Number of HSP's successfully gapped: 4
Length of query: 54
Length of database: 3,060,696,203
Length adjustment: 27
Effective length of query: 27
Effective length of database: 2,806,328,798
Effective search space: 75770877546
Effective search space used: 75770877546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 125 (52.8 bits)