BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0009.p (180 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5L2Q6.1 Q5L2Q6_GEOKA Phage-like element PBSX protein 113 9e-24 P39780.4 XKDA_BACSU Phage-like element PBSX protein xkdA 111 2e-23 Q65L43.1 Q65L43_BACLD XkDa 107 5e-22 A7Z3N7.1 A7Z3N7_BACA2 XkDa 100 5e-20 C3BNM6.1 C3BNM6_9BACI Putative uncharacterized protein 99 1e-19 >Q5L2Q6.1 Q5L2Q6_GEOKA Phage-like element PBSX protein Length = 231 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 3 SYYQMTALEKWTEDLYERLEIVKPAQISIAYIAERLNIWVHYLDVRSKGIEASAGMYSMF 62 S YQ T LE++ +LYE LEI KP Q+ + IA +LN+W+H+ D+RS IE + G+YS+ Sbjct: 4 SSYQFTPLEQYICELYEHLEIKKPHQLDMIDIAAKLNVWLHFADIRSTAIERN-GVYSII 62 Query: 63 IDNRLPEELQRLEFLHELCHLLRHAGSHTLMPEQFTQAEKDESERFILYAAMPYSMISKM 122 +D RL + Q EF HEL H+LRHAG+ L+P Q ++ ++ F L+ +P M+ ++ Sbjct: 63 VDRRLSRQQQWQEFGHELGHVLRHAGNQMLLPASLVQLQEAQATNFALHFCVPTFMLLEL 122 Query: 123 RLPELREDAIQELAAVFQVPCELALQRIDQIQ 154 LP ++ + L+ F V A +R D+ + Sbjct: 123 ELPYTEKEIVYVLSETFGVEPLFAKRRWDRFK 154 >P39780.4 XKDA_BACSU Phage-like element PBSX protein xkdA Length = 198 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 96/150 (64%), Gaps = 1/150 (0%) Query: 7 MTALEKWTEDLYERLEIVKPAQISIAYIAERLNIWVHYLDVRSKGIEASAGMYSMFIDNR 66 ++ LE++ ++LY RL I P I + IA+ L+IWVH+ D+ S ++ GMYS+ ++ + Sbjct: 5 LSHLEEYVKNLYGRLGITSPHHIDMLKIAKDLDIWVHFEDMGSMMVKYD-GMYSIVLNQK 63 Query: 67 LPEELQRLEFLHELCHLLRHAGSHTLMPEQFTQAEKDESERFILYAAMPYSMISKMRLPE 126 E Q +F HELCH+L+HAG+H M + F + ++ ++ +F+ + +P M+ +M LP+ Sbjct: 64 KSREEQWEDFGHELCHVLKHAGNHFQMNKLFRELQEFQANQFMYHFCVPTFMLLQMELPQ 123 Query: 127 LREDAIQELAAVFQVPCELALQRIDQIQRR 156 R A+ +AAVF+V E A +R+D +RR Sbjct: 124 WRSQALATIAAVFRVTKEFADKRLDMFERR 153 >Q65L43.1 Q65L43_BACLD XkDa Length = 218 Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 5 YQMTALEKWTEDLYERLEIVKPAQISIAYIAERLNIWVHYLDVRSKGIEASAGMYSMFID 64 + ++ LE++ +++Y++ +P QI + IA NIW+HY +V S I+ GMYS+ ++ Sbjct: 3 FYLSHLEEYVKNMYQKFGFFEPHQIDMNRIAAHFNIWIHYENVNSMMIKHD-GMYSIILN 61 Query: 65 NRLPEELQRLEFLHELCHLLRHAGSHTLMPEQFTQAEKDESERFILYAAMPYSMISKMRL 124 + L +E Q +F HELCH+L+HAG+ M + F + ++ ++ +F+ + +P M+ KM Sbjct: 62 SSLSKEKQWEDFAHELCHVLKHAGNQLYMNQMFRELQEFQANQFMYHFCVPTFMLLKMDF 121 Query: 125 PELREDAIQELAAVFQVPCELALQRIDQIQRR 156 P+LR A + +A +F+V A++RI+ ++R Sbjct: 122 PQLRCQAAKMIADLFKVTESFAVKRIELFEKR 153 >A7Z3N7.1 A7Z3N7_BACA2 XkDa Length = 196 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 1/150 (0%) Query: 7 MTALEKWTEDLYERLEIVKPAQISIAYIAERLNIWVHYLDVRSKGIEASAGMYSMFIDNR 66 +T LE++ ++LY R+ + P I + IA+ L+IW+H+ D S ++ GMYS+ ++ + Sbjct: 5 LTHLEEYVKNLYCRMGMTAPLHIDMQMIAKELDIWIHFEDTHSMMLKRD-GMYSIVLNQK 63 Query: 67 LPEELQRLEFLHELCHLLRHAGSHTLMPEQFTQAEKDESERFILYAAMPYSMISKMRLPE 126 E Q +F HELCH+L+H G+H M + F + ++ ++ F+ + +P M+ M LP+ Sbjct: 64 KSPEEQWQDFAHELCHVLKHTGNHFHMNKLFRELQEFQANHFMYHFCVPTFMLLNMELPQ 123 Query: 127 LREDAIQELAAVFQVPCELALQRIDQIQRR 156 R A+ +AA F+V A +R++ +RR Sbjct: 124 RRSHAVILIAAAFRVTASFAEKRLELFERR 153 >C3BNM6.1 C3BNM6_9BACI Putative uncharacterized protein Length = 174 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 1/164 (0%) Query: 5 YQMTALEKWTEDLYERLEIVKPAQISIAYIAERLNIWVHYLDVRSKGIEASAGMYSMFID 64 Y T +E + ++LY L I P QI + IA++LNIW+H+ S+ I + S+ ID Sbjct: 7 YYTTQIEDYIKNLYHSLSIFIPEQIDMITIAQKLNIWLHFAPFGSRAI-CKNNLPSIIID 65 Query: 65 NRLPEELQRLEFLHELCHLLRHAGSHTLMPEQFTQAEKDESERFILYAAMPYSMISKMRL 124 NR Q +F HELCH+L H G+ +P+ F ++ ++ F L+ +P M+ + L Sbjct: 66 NRNMAYQQWEDFGHELCHVLFHVGNQLYIPKLFLDYQEAKANNFKLHFCIPTFMLRTLNL 125 Query: 125 PELREDAIQELAAVFQVPCELALQRIDQIQRRVFQGQLIAVMER 168 PE R+++I +A F V A QR+ + ++ L+ V + Sbjct: 126 PETRKESIYLIAKTFNVSFHTAEQRLLHYENQLLASHLLNVFSQ 169 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 969,406,758 Number of extensions: 35760199 Number of successful extensions: 117318 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 117294 Number of HSP's successfully gapped: 30 Length of query: 180 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 53 Effective length of database: 1,864,227,298 Effective search space: 98804046794 Effective search space used: 98804046794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)