BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0003.p
         (166 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7NHW5.1 A7NHW5_ROSCS Membrane-flanked domain                          78   3e-13
A5UZJ9.1 A5UZJ9_ROSS1 Membrane-flanked domain                          78   3e-13
C5EU09.1 C5EU09_9FIRM Putative uncharacterized protein                 70   8e-11
A6NQE8.1 A6NQE8_9BACE Putative uncharacterized protein                 69   2e-10
B0PF41.1 B0PF41_9FIRM Putative uncharacterized protein                 69   2e-10

>A7NHW5.1 A7NHW5_ROSCS Membrane-flanked domain
          Length = 174

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 10/118 (8%)

Query: 49  ETKLWQGKPAGISDRIKGIVGLNTTTYTITSQRIMVKTGLIGKDVEEIELLRVNDFSVAQ 108
           E  LW+G+P          + L T  Y +T++R+ +  GLIG+ V++IEL+R+ D   +Q
Sbjct: 67  ERILWEGRP---------FLSL-TERYVLTTERVRIYRGLIGRAVDDIELVRLQDVDFSQ 116

Query: 109 SIPQRILGIGTLTVFSDDASSPQLLFHRIRQPQSVKDVLRQAVRNEKIANNISYREQI 166
           +  +RILGIG + +   D S+P+     + QP+ V++++R+A  + +    +S+REQ+
Sbjct: 117 NAGERILGIGDIHLRGADVSTPEATLRNVHQPEEVRELIRRAWLDARKRYGVSFREQM 174


>A5UZJ9.1 A5UZJ9_ROSS1 Membrane-flanked domain
          Length = 174

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 72/119 (60%), Gaps = 12/119 (10%)

Query: 49  ETKLWQGKP-AGISDRIKGIVGLNTTTYTITSQRIMVKTGLIGKDVEEIELLRVNDFSVA 107
           E  LW+G+P   I++R           Y +T++R+ +  GLIG+++++IEL+R+ D    
Sbjct: 67  ERVLWEGRPFLSITER-----------YVLTTERVRIYRGLIGRNIDDIELVRLQDIDFT 115

Query: 108 QSIPQRILGIGTLTVFSDDASSPQLLFHRIRQPQSVKDVLRQAVRNEKIANNISYREQI 166
           Q+  +RI GIG + +   D S+P++    + QP+ V++++R+A  + +    +S+REQ+
Sbjct: 116 QNAGERIFGIGDIHLRGADPSTPEVTLRNVHQPEEVRELIRRAWLDARKRYGVSFREQM 174


>C5EU09.1 C5EU09_9FIRM Putative uncharacterized protein
          Length = 133

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 61  SDRIKGIVGL--NTTTYTITSQRIMVKTGLIGKDVEEIELLRVNDFSVAQSIPQRILGIG 118
           SDR +  +GL    T Y +T  R+ +KTG++    +E+ L R+ D S+ ++  QRI+G+G
Sbjct: 9   SDRKRNWLGLPWTFTVYGLTEDRLFIKTGILNIHEDEVRLYRILDLSLRKTFWQRIVGLG 68

Query: 119 TLTVFSDDASSPQLLFHRIRQPQSVKDVLRQAVRNEKIANNISYREQI 166
           T+ V S D +      H IR  ++VK+ L Q V  E+    +S RE I
Sbjct: 69  TIHVDSSDKTMKAFDIHNIRDCENVKEQLSQLVEQERDNKRVSSREFI 116


>A6NQE8.1 A6NQE8_9BACE Putative uncharacterized protein
          Length = 155

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 10/113 (8%)

Query: 50  TKLWQGKPAGISDRIKGIVGL--NTTTYTITSQRIMVKTGLIGKDVEEIELLRVNDFSVA 107
           T LW+ +        K I+GL    T Y ++  RI  +TGL+    EE+ L RV D  + 
Sbjct: 22  TYLWKDR--------KRILGLPITFTRYRLSEDRIFRETGLLNLKEEEVLLYRVRDLELK 73

Query: 108 QSIPQRILGIGTLTVFSDDASSPQLLFHRIRQPQSVKDVLRQAVRNEKIANNI 160
           +S+ QRI G+GT+ V S D ++P L    I+ P+ VK++L + V   K++  +
Sbjct: 74  RSLFQRIFGVGTVCVHSSDKTTPHLDLLNIKNPREVKELLHRQVEEMKLSRRM 126


>B0PF41.1 B0PF41_9FIRM Putative uncharacterized protein
          Length = 171

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 6/111 (5%)

Query: 50  TKLWQGKPAGISDRIKGIVGLNTTTYTITSQRIMVKTGLIGKDVEEIELLRVNDFSVAQS 109
           T LW  +      RI G+  +  T Y+++  R+ ++TGL+    EE+ L RV D S++ S
Sbjct: 44  TILWHDR-----KRICGM-PITFTRYSLSDDRLFLETGLLNMKQEEVILYRVRDISLSIS 97

Query: 110 IPQRILGIGTLTVFSDDASSPQLLFHRIRQPQSVKDVLRQAVRNEKIANNI 160
           + QRI  +GT+ V S D S P+L    IR+P+ VK+++ + V   KIA  +
Sbjct: 98  LWQRIFRVGTVLVQSSDKSLPKLELKNIRKPREVKELIHKQVEEMKIARRM 148


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 870,604,131
Number of extensions: 29700314
Number of successful extensions: 69398
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 69410
Number of HSP's successfully gapped: 23
Length of query: 166
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 41
Effective length of database: 1,883,069,328
Effective search space: 77205842448
Effective search space used: 77205842448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)