BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0001.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGG8.1 B3KGG8_9BACI YolD-like protein                                93   9e-18
B3K4M8.1 B3K4M8_9BACI YolD-like protein                                89   9e-17
B7DVG2.1 B7DVG2_9BACL YolD                                             57   8e-07
B3KJ47.1 B3KJ47_9BACI YolD-like protein                                55   2e-06

>B3KGG8.1 B3KGG8_9BACI YolD-like protein
          Length = 113

 Score = 92.8 bits (229), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 1/107 (0%)

Query: 3   KKLEEYGLWESSRVLLPEHKSRIPKDEREMLNRGKPVLDEQKLEEIECTLALSLRSHVRV 62
           KKLE  GLWESSR++LPEHK  I + + E   + KPVLD Q++E IE  LA S   H  +
Sbjct: 6   KKLEGNGLWESSRMMLPEHKETIIRRQLEEGRKNKPVLDPQEMELIEQALAESFHMHRTI 65

Query: 63  TVVMHDPCGNKQLNGFVTSIHTHSREIKLQWA-EEWKWIQVDDIVEA 108
            + + D   +++L G V+ IHT+ REIKL     EW+WI+++DIV A
Sbjct: 66  KLRLFDEYEDQELTGTVSVIHTYRREIKLATGIGEWEWIKINDIVSA 112


>B3K4M8.1 B3K4M8_9BACI YolD-like protein
          Length = 109

 Score = 89.4 bits (220), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 1/104 (0%)

Query: 4   KLEEYGLWESSRVLLPEHKSRIPKDEREMLNRGKPVLDEQKLEEIECTLALSLRSHVRVT 63
           KL+  GLWESSR++LPEH+  I + + E   + +P LD Q++E IE  LA S   H  VT
Sbjct: 3   KLDGNGLWESSRMMLPEHRETIIRRQLEEGRKDRPTLDPQEMELIEQALAESFYEHRAVT 62

Query: 64  VVMHDPCGNKQLNGFVTSIHTHSREIKLQWAE-EWKWIQVDDIV 106
           V + D   + +L G V  IHT  REIKL  +E EW+WI++D+I+
Sbjct: 63  VRLFDEYEDTELTGIVVLIHTFRREIKLSMSEGEWQWIKIDEII 106


>B7DVG2.1 B7DVG2_9BACL YolD
          Length = 104

 Score = 56.6 bits (135), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 62/98 (63%), Gaps = 3/98 (3%)

Query: 10  LWESSRVLLPEHKSRIPKDEREMLNRGKPVLDEQKLEEIECTLALSLRSHVRVTVVMHDP 69
           ++E+ R++LPEH++ + + +RE + R +PVL E++LEE++  L+ ++R    V + +  P
Sbjct: 8   IFEAMRLVLPEHRALMAQIQRERMKRKRPVLAEERLEEMQYGLSEAIREGRAVRLTVFTP 67

Query: 70  CGNKQLNGFVTSIHTHSREIKLQWAEEWKWIQVDDIVE 107
             +  L G V+      RE++++  +  K +++DD++E
Sbjct: 68  ERDVVLVGRVS---VRGRELRVRTIDGEKVVKLDDVIE 102


>B3KJ47.1 B3KJ47_9BACI YolD-like protein
          Length = 110

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 3   KKLEEYGLWESSRVLLPEHKSRIPKDEREMLNRGKPVLDEQKLEEIECTLALSLRSHVRV 62
           KKL   GLWESSR++L EH+  I + + E   +  P+LDEQ+++ I   ++ + RS   +
Sbjct: 2   KKLTGNGLWESSRMMLFEHRDAILEKQGEKHKQTHPLLDEQQMQWIIEKISTAYRSKETI 61

Query: 63  TVVMHDPCGNKQLNGFVTSIHTHSREIKLQWAEEWKWIQVDDIVEA 108
            + ++   GN  +NG ++ I+T +  + +       WI + DI+E 
Sbjct: 62  QLQVYGEYGNYAVNGRISRINTLNERLLVGDT----WINLVDILEV 103


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 693,517,538
Number of extensions: 24058499
Number of successful extensions: 55809
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 55807
Number of HSP's successfully gapped: 7
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)