BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0263.0023.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCV6.1 B3KCV6_9BACI Putative uncharacterized protein 312 3e-83 B5UY47.1 B5UY47_BACCE Putative uncharacterized protein 300 1e-79 Q1DG66.1 Q1DG66_MYXXD Putative uncharacterized protein 189 3e-46 B1D949.1 B1D949_9BACL Putative uncharacterized protein 187 1e-45 B5EHW4.1 B5EHW4_GEOBB Putative uncharacterized protein 150 2e-34 >B3KCV6.1 B3KCV6_9BACI Putative uncharacterized protein Length = 281 Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 148/283 (52%), Positives = 203/283 (71%), Gaps = 8/283 (2%) Query: 16 MPQKLAVIVIHGLGKQHEDFADKFIEEMHKAFSAVSGEKEPGQRIVVKPVYWASVFANRE 75 M QK+AVI++HGLG Q + +ADKF++ + FS SG P +++ ++ V+WA VFA RE Sbjct: 1 MTQKIAVIIVHGLGTQKKSYADKFMKNLRDTFSRTSGI--PHEQLAMEAVHWADVFAARE 58 Query: 76 DKLMKTLVGPPYNLHYRELREFMIHYLADAVAYQPLDGGDDNYEAVHKTISTQLNILSAE 135 D+L+ + + PY L Y+ LR+++I+ LADAVAYQP++ D NYEA+H+TIS L+ L+ Sbjct: 59 DELIGSSI-KPYRLRYQHLRQYVINNLADAVAYQPVESEDQNYEAIHRTISEALHRLALS 117 Query: 136 AGPDAPLCVISHSLGTVIASNFFYDLQ---NGHRKPPILNPDSALERGDTLSLFYSCGTT 192 AGP APLCVISHSLG+VIASNFFYDLQ GHR ++NP++ LERG+ L+LFY+ GTT Sbjct: 118 AGPHAPLCVISHSLGSVIASNFFYDLQFSSRGHRL--VVNPEAPLERGELLTLFYTLGTT 175 Query: 193 LPLWGLRFPELDKPIQVPSKEFSAQHPQISGEWINFFDKDDVLAYPLKSIDPAYDKVVTE 252 LPLW +R+ + DKPI VPS + + + GEW+NF+DKDD+LAYPLKSI+ YD+ V + Sbjct: 176 LPLWSMRYRDFDKPIVVPSAQLKLYYEHLLGEWVNFYDKDDILAYPLKSINEEYDRTVRQ 235 Query: 253 DRDVNVGTIIKGWTPLCHNGYLKSSNVITPIAEGLDKLWQQIN 295 D VNVG + W PL H+GY S ++ IA L+ W+ IN Sbjct: 236 DISVNVGNWLTSWNPLSHSGYFYSKPILEYIASQLEATWRSIN 278 >B5UY47.1 B5UY47_BACCE Putative uncharacterized protein Length = 283 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 142/281 (50%), Positives = 193/281 (68%), Gaps = 4/281 (1%) Query: 18 QKLAVIVIHGLGKQHEDFADKFIEEMHKAFSAVSGE--KEPGQRIVVKPVYWASVFANRE 75 QK+AV +IHG+G+Q +FADK IEE+ F++ +P ++ KP++WA +FA RE Sbjct: 2 QKIAVAIIHGIGEQKAEFADKMIEEIKNRFASHLNHILDDPTSQLAFKPIHWAELFAERE 61 Query: 76 DKLMKTLVGPPYNLHYRELREFMIHYLADAVAYQPLDGGDDNYEAVHKTISTQLNILSAE 135 +KL +T+V NLH+ +LR+F+IHYL D +AYQP++ NYE VH+ I LN L Sbjct: 62 NKLFQTIVLNK-NLHFNDLRDFIIHYLGDVIAYQPVETAKQNYERVHEKIEQNLNDLVNV 120 Query: 136 AGPDAPLCVISHSLGTVIASNFFYDLQ-NGHRKPPILNPDSALERGDTLSLFYSCGTTLP 194 AG APLCVISHSLG+VI SN+FYDLQ + K N S LE+G+TL+LFY+ GTTLP Sbjct: 121 AGESAPLCVISHSLGSVITSNYFYDLQFKVNHKDLEKNNLSPLEKGETLTLFYTLGTTLP 180 Query: 195 LWGLRFPELDKPIQVPSKEFSAQHPQISGEWINFFDKDDVLAYPLKSIDPAYDKVVTEDR 254 LW LR+ ++PI +PS + +P + GEWINF+DKDDVL YPL+ I+ Y K VTEDR Sbjct: 181 LWSLRYYNFNRPINIPSANLNDFYPGLQGEWINFYDKDDVLGYPLRDINETYAKAVTEDR 240 Query: 255 DVNVGTIIKGWTPLCHNGYLKSSNVITPIAEGLDKLWQQIN 295 ++NVG +I W PL HN Y ++VI PI E L ++W+ +N Sbjct: 241 EINVGNVITSWNPLAHNAYFIDNDVINPIVEALVRVWKYVN 281 >Q1DG66.1 Q1DG66_MYXXD Putative uncharacterized protein Length = 333 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 161/328 (49%), Gaps = 50/328 (15%) Query: 18 QKLAVIVIHGLGKQHEDFADKFIEEMHKAFSAVSGEKEPGQRIVVKPVYWASVFANREDK 77 QKLAV+VIHG+ D + + + F+ +G + V+ V WASV E Sbjct: 5 QKLAVLVIHGIEVDDPGLYDTAVRLLRQHFAQHAGAGP--DTLAVETVNWASVLEGAEKD 62 Query: 78 L----------------------------------MKTLVGPP---YNLHYRELREFMIH 100 L M L+ P +L Y LR ++H Sbjct: 63 LLARYAPADADTYWKSLYDSVRTVNQGHESALVPMMLRLMRPSLRGMDLRYPGLRWMLVH 122 Query: 101 YLADAVAYQPLDGGDDNYEAVHKTISTQLNILSAEAGPDAPLCVISHSLGTVIASNFFYD 160 ++ D +AYQ D Y +H+ ++ L L +AG APLCVI+HSLG+VIASN+FYD Sbjct: 123 FVGDIIAYQTNPADPDVYTGIHRKVAEALGRLRQQAGDTAPLCVIAHSLGSVIASNYFYD 182 Query: 161 LQNGH--------RKPPILNPDSALERGDTLSLFYSCGTTLPLWGLRFP--ELDKPIQVP 210 LQ S LERG+TLS FY+ G+ + LW LR+P ELD+P+QVP Sbjct: 183 LQAQRLAGRDIIEETVRAAQGSSPLERGETLSHFYTLGSPMALWSLRYPHAELDQPVQVP 242 Query: 211 SKEFSAQHPQISGEWINFFDKDDVLAYPLKSIDPAYDKVVTEDRDVNVGTIIKGWTPLCH 270 + E + HP + G W+NF D+DDV A+PL+++ AY V EDR V+V + WTPL H Sbjct: 243 APELARHHPGLRGRWLNFHDEDDVFAWPLQALSAAYHAAV-EDRAVSVAGPLFSWTPLVH 301 Query: 271 NGYLKSSNVITPIAEGLDKLWQQINVKA 298 Y V+ I L W Q++ A Sbjct: 302 PFYWSDDAVMRDIGTSLAGAWVQLSSAA 329 >B1D949.1 B1D949_9BACL Putative uncharacterized protein Length = 286 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 105/283 (37%), Positives = 156/283 (55%), Gaps = 19/283 (6%) Query: 19 KLAVIVIHGLGKQHEDFADKFIEEMHKAFSAVSGEKEPGQRIVVKPVYWASVFANREDKL 78 K+AV VIHG+G+ E+F + + + V+ P ++ V+ +YW + E++L Sbjct: 2 KIAVAVIHGIGQSRENFHAELASNLCAQMAIVN----PSVKLHVEGIYWGDIVNRLEERL 57 Query: 79 MKTLVGPPYNL-HYRELREFMIHYLADAVAYQPLDGGDDN------YEAVHKTISTQLNI 131 + G P + LR F ++ L +A+AYQ + +D Y+ +H+ + L Sbjct: 58 WSRIRGKPLRWAKWIRLRPFFVNQLGEAIAYQAVPRDNDPTPDDYIYDEIHRRFAVCLQR 117 Query: 132 LSAEAGPDAPLCVISHSLGTVIASNFFYDLQNGHRKPP----ILNPDSALERGDTLSLFY 187 LS AG DAPLC+ISHSLG++I+SNFF+DLQN P I +S L G+TL+ FY Sbjct: 118 LSDLAGQDAPLCIISHSLGSIISSNFFHDLQNNKLTPKVSEVIGTSESRLVHGETLTHFY 177 Query: 188 SCGTTLPLWGLRFPELDKPIQVPSKEFSAQHPQISGEWINFFDKDDVLAYPLKSIDPAYD 247 + G+ L +W LRF + PI VP+ GEW+NF+D DDV+AYP+K ++ Y Sbjct: 178 TLGSPLAVWALRFKDFGVPIAVPASPLQGLG---IGEWVNFYDTDDVIAYPIKPLNERYK 234 Query: 248 KVVTEDRDVNVGTIIKGWTPLCHNGYLKSSNVITPIAEGLDKL 290 KVVT D +V ++ WTPL H Y ++ VI I L L Sbjct: 235 KVVTADIEVECPGLL-SWTPLSHRKYFQTQAVIDRIVHSLSTL 276 >B5EHW4.1 B5EHW4_GEOBB Putative uncharacterized protein Length = 289 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/268 (32%), Positives = 142/268 (52%), Gaps = 9/268 (3%) Query: 16 MPQKLAVIVIHGLGKQHEDFADKFIEEMHKAFSAVSGEKEPGQRIVVKPVYWASVFANRE 75 M +K+ V+++HGLG +DFA + E+ + ++G I + VYW + + +E Sbjct: 1 MNKKVGVLLVHGLGAVSDDFAHDTVHELRER---IAGRGLNRDEIAWQSVYWNPLLSAKE 57 Query: 76 DKLMKTLVGPPYNLHYRELREFMIHYLADAVAYQ-PLDGGDDNYEAVHKTISTQLNILSA 134 ++L L +L++ +LR+F I+ AY D D Y+ +H + L L A Sbjct: 58 NRLWVDLCADN-DLNWAKLRKFFINSFGTITAYAYDRDQPDSLYQRIHGLVRDSLKELRA 116 Query: 135 EAGPDAPLCVISHSLGTVIASNFFYDLQNGHRKPPILNPDSALERGDTLSLFYSCGTTLP 194 G D PL VI+HSLG+VI S+ +D Q G K + ER +TL+ F + G+ +P Sbjct: 117 NIGADRPLLVIAHSLGSVIMSDHIWDRQKG--KDEERYGATPFERMETLAGFITLGSNIP 174 Query: 195 LWGLRFPELDKPIQVPSKEFSAQHPQISGEWINFFDKDDVLAYPLKSIDPAYDKVVTEDR 254 + + E+ I+ P + + + +W+N +D DDVL +PLK + P+Y+K V+ED Sbjct: 175 MMTVALDEV-AAIEFPPSSLAEDYRK-KAKWLNLYDSDDVLGWPLKPLSPSYEKAVSEDI 232 Query: 255 DVNVGTIIKGWTPLCHNGYLKSSNVITP 282 +V+VG I+ W P H Y +VI P Sbjct: 233 EVSVGNILTAWNPTSHAAYWTDDSVIKP 260 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,934,821,052 Number of extensions: 82312192 Number of successful extensions: 162714 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 162657 Number of HSP's successfully gapped: 19 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)