BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0263.0009.p (571 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2TL43.1 B2TL43_CLOBB Transcriptional regulator, AraC family EC=... 385 e-105 A6LXV6.1 A6LXV6_CLOB8 Xylan 1,4-beta-xylosidase EC=3.2.1.37 379 e-103 C3B022.1 C3B022_BACMY Xylan 1,4-beta-xylosidase 282 6e-74 B1D623.1 B1D623_9BACL Transcriptional regulator, AraC family EC=... 273 3e-71 A8MEF5.1 A8MEF5_ALKOO Transcriptional regulator, AraC family 246 4e-63 >B2TL43.1 B2TL43_CLOBB Transcriptional regulator, AraC family EC=3.2.1.37 Length = 838 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/543 (39%), Positives = 317/543 (58%), Gaps = 14/543 (2%) Query: 1 MEFRHEVISFPKQLPIKFFLHRIGQVNRHWHQSLELIINIKGSVHITVSNQSYELGAGDI 60 M E+++F + + I + R+WHQS+ELI + GSV + N Y L D+ Sbjct: 1 MNTNKELVNFKTSSSMHISVLAIENLERYWHQSIELIYVLAGSVQVQCRNMQYNLHEDDL 60 Query: 61 ILINSNEVHELHAEDATMIALQIKLELLKEVSTDVQKMYYDCNSARSGHPDRFKPLKRIV 120 ILIN +VH L + +++L+I + L + + +DCNS+ +F PLKR++ Sbjct: 61 ILINMFDVHALSGDQCEVLSLKIDISALNPEISHFSQKRFDCNSSLEADETKFIPLKRLL 120 Query: 121 AQILKYNIHPNEYIDLKNISLVYELIYELGSNFSTDGKDINSYSQENLDRLSRILDYVNS 180 A I+K N++P + I+L N S VYEL+Y L +NF +G ++ +N +R+ IL+Y++ Sbjct: 121 ALIVKSNVNPEDNIELLNKSYVYELLYILTTNFKVEGTTNSTDINKNSERIKNILNYISE 180 Query: 181 KYSDPISLQNMAKTEYLSVPYLSKYFKRNMGMSFSDYLKDIRLHHAVNDLLNESLTIDKV 240 Y+ ISL N+A T YLS+PY+SK FK +G+SFSDYL ++RL HA+ DL N +L I+ + Sbjct: 181 NYTKKISLNNLADTFYLSMPYISKIFKELIGLSFSDYLTEVRLSHAIKDLANANLKIEYI 240 Query: 241 AAQNGFPNVRSFVVAFTEKYGELPSVWRRKHAGEMLGSIEATKEKSVNYYQDEPLSYYED 300 A +NGF N RSFV AF KY LPS +R+K + + +S+NY+ + + Sbjct: 241 AEKNGFSNTRSFVSAFKNKYDYLPSKYRKK-IDTYSSDGQKSMTESINYFALRHNTSFNR 299 Query: 301 ITAFIESNL----ESAPVDLPQRIGSSRTSLIKVPAAGSGQGLRHHFKNFIGVSRAKEVL 356 + +++ ++ E+ P I TS+ G L+H FK + +AK VL Sbjct: 300 LVDYLKHDIIITEENKPDTTIYEIDPIDTSI-------KGVQLKHTFKTLTCIGKAKHVL 352 Query: 357 LADVQQALRIAQAEIGFKYIKMHSLLDDDMMVYNEDAEGKPVYNFQFIERVFDFLLSIRL 416 +++ Q LR Q +IGFKYI+ H LLDD+MM Y+E+ EG P F +I+ V DFLLSI L Sbjct: 353 ISESQHMLRQVQQDIGFKYIRFHGLLDDEMMFYSENEEGSPELCFTYIDLVIDFLLSINL 412 Query: 417 KPLVQFSFMPKKLASNLEKTVFYNHINTSPPKSIDKWNGLIRALTQHLIQRYGLEEVRSW 476 KP ++ SFMPK+LA + +T+F+ S PKS++KW +I+ L +H I RYG +EV SW Sbjct: 413 KPFMELSFMPKELAMDPTRTMFFIGSIISLPKSMEKWTYIIQQLIKHFISRYGKKEVESW 472 Query: 477 LFCVWNEPSSSNLLFGFSHDDIFNQLYQNTYTTVKQIDSAIPFGGPAAFS-TYNKNEDWL 535 F +WNEP +FGF + F Y+ TY T+K I+ I FG F+ T + DWL Sbjct: 473 PFFLWNEPDLKK-MFGFENRTNFFNFYKETYETIKMINPYINFGSSPVFADTLAGSNDWL 531 Query: 536 FQF 538 F Sbjct: 532 DAF 534 >A6LXV6.1 A6LXV6_CLOB8 Xylan 1,4-beta-xylosidase EC=3.2.1.37 Length = 841 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 213/545 (39%), Positives = 326/545 (59%), Gaps = 18/545 (3%) Query: 1 MEFRHEVISFPKQLPIKFFLHRIGQVNRHWHQSLELIINIKGSVHITVSNQSYELGAGDI 60 M E+I+F P++F + I + R+WH+S+ELI + GSV + N Y L D+ Sbjct: 1 MNINQELITFKTSSPMEFSVLAIENLERYWHKSIELIYILTGSVRVQCRNMQYTLHEDDL 60 Query: 61 ILINSNEVHELHAEDATMIALQIKLELLKEVSTDVQKMYYDCNSARSGHPDRFKPLKRIV 120 ILIN +VH L+ + +++L+I + L + + +DCNS+ +F LKR++ Sbjct: 61 ILINMFDVHSLYGKKCEVLSLKIDISALDPEISRFAQNRFDCNSSIEADKKKFIRLKRLL 120 Query: 121 AQILKYNIHPNEYIDLKNISLVYELIYELGSNF----STDGKDINSYSQENLDRLSRILD 176 A I+K N++P+E ++L N S +YEL+Y L S F S + DIN +N +R+ IL Sbjct: 121 ALIVKSNVNPDENVELLNKSYIYELLYILTSTFKVEDSANSTDIN----KNSERIKNILH 176 Query: 177 YVNSKYSDPISLQNMAKTEYLSVPYLSKYFKRNMGMSFSDYLKDIRLHHAVNDLLNESLT 236 Y++ Y + ISL +++ YLS+PY+SK FK +G+SFSDYL +IRL HA+ DL + +LT Sbjct: 177 YISENYRNKISLNSLSDEFYLSMPYISKIFKDFIGISFSDYLIEIRLSHAMKDLTDPNLT 236 Query: 237 IDKVAAQNGFPNVRSFVVAFTEKYGELPSVWRRKHAGEMLGSIEATKEKSVNYYQDEPLS 296 I+ +A +NGF N RSFV +F KY LPS +R+ LG+ + E SVNY+ + Sbjct: 237 IEYIAEKNGFSNTRSFVSSFKSKYFCLPSSYRKNMDAYDLGTKKKITE-SVNYFALRHNT 295 Query: 297 YYEDITAFIESNLESAPVDLPQRIGSSRTSLIKVPAAGSGQG--LRHHFKNFIGVSRAKE 354 + + +++ + V +P+ T P S +G L+H FK I + +AK Sbjct: 296 SFNRLVDYLKHD-----VIIPEATKQHTTICEVNPIDISIKGVQLKHTFKTLICIGKAKH 350 Query: 355 VLLADVQQALRIAQAEIGFKYIKMHSLLDDDMMVYNEDAEGKPVYNFQFIERVFDFLLSI 414 +L+++ Q LR Q +IGF+YI+ H L DD+MM Y+E+ +G+ F +I+ V DFLLSI Sbjct: 351 ILISENQDMLREMQKDIGFRYIRFHGLFDDEMMFYSENEDGESELCFTYIDLVVDFLLSI 410 Query: 415 RLKPLVQFSFMPKKLASNLEKTVFYNHINTSPPKSIDKWNGLIRALTQHLIQRYGLEEVR 474 +LKP ++ SFMPK+LA + +T+F+ + S PKSI+KW +I L +HLI RYG +EV Sbjct: 411 KLKPFMELSFMPKQLALDPSRTMFFINSIISLPKSIEKWTYIIEELIKHLISRYGKKEVE 470 Query: 475 SWLFCVWNEPSSSNLLFGFSHDDIFNQLYQNTYTTVKQIDSAIPFGGPAAFS-TYNKNED 533 SW F +WNEP +FGF + + F L++ T+T++K ID I FG FS T + D Sbjct: 471 SWPFFLWNEPDLIE-MFGFENSNDFFILFKETFTSLKNIDPCINFGSSPVFSNTLAGSND 529 Query: 534 WLFQF 538 W+ F Sbjct: 530 WMDTF 534 >C3B022.1 C3B022_BACMY Xylan 1,4-beta-xylosidase Length = 768 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 159/475 (33%), Positives = 248/475 (52%), Gaps = 14/475 (2%) Query: 68 VHELHAEDATMIA-LQIKLELLKEVSTDVQKMYYDCNSARSGHPDRFKPLKRIVAQILKY 126 +HE+ D +IA I LKE ++ +DC S ++R++A++++ Sbjct: 1 MHEVIGLDRNIIATFLIPFSYLKEKIARADEISFDCYSGDKERRHALDLVRRLLAEMVQL 60 Query: 127 NIHPNEYIDLKNISLVYELIYELGSNFSTDGKDINSYSQENLDRLSRILDYVNSKYSDPI 186 + ++ + E++ L F +++ ++R+ RI+ Y+ Y +PI Sbjct: 61 MYQKGDAYEIDMQIRMLEVLSILLKQFKVSA-SAGIMNEKYMERMLRIITYIEDHYKEPI 119 Query: 187 SLQNMAKTEYLSVPYLSKYFKRNMGMSFSDYLKDIRLHHAVNDLL-NESLTIDKVAAQNG 245 +LQ +A+ E+LS+PYLSK+F N+G++F YL IRL + V +LL N + I +A ++G Sbjct: 120 TLQAIAEREFLSIPYLSKFFSDNIGLNFQSYLTSIRLKYTVEELLHNGEIPIADIALKHG 179 Query: 246 FPNVRSFVVAFTEKYGELPSVWRRKHAGEMLGSIEATKEKSVNYYQDEPLSYYEDITAFI 305 FPN +SF AF +Y PS +R+ + E + + Q L I Sbjct: 180 FPNAKSFYTAFKARYNVTPSEYRKHFRPDFGKKKERESSNYLTFNQSSAL-------GII 232 Query: 306 ESNLESAPVDLPQRIGSSRTSLIKVPAAGSGQGLRHHFKNFIGVSRAKEVLLADVQQALR 365 L+ +P + I T +V + +RH +K+ I + +AKE L ADVQ L+ Sbjct: 233 SQYLQRSPSQQVEEIIGLETKAYQVSLSAHSSLIRHTWKSLIAIGKAKEGLHADVQWQLK 292 Query: 366 IAQAEIGFKYIKMHSLLDDDMMVYNEDAEGKPVYNFQFIERVFDFLLSIRLKPLVQFSFM 425 Q F+Y++ H + DD MMVY ED GKPVYNF+ ++ +FDFLLS+R+KP ++ FM Sbjct: 293 RVQERCPFRYLRFHGIFDDSMMVYTEDETGKPVYNFRLVDELFDFLLSVRIKPFIELGFM 352 Query: 426 PKKLASNLEKTVFYNHINTSPPKSIDKWNGLIRALTQHLIQRYGLEEVRSWLFCVWNEPS 485 P LA++ EKT+FY SPP+S+DKW L+ +H + RYG EEV SW F WNEP Sbjct: 353 PSALAADKEKTIFYVKSYISPPRSVDKWCELVDRFLRHCMNRYGKEEVESWKFEFWNEPE 412 Query: 486 SSNLLFGFSHDDIFNQLYQNTYTTVKQIDSAIPFGGPAAFSTYNKNE--DWLFQF 538 G + + +LY TY TVK+I + G P T + + D F F Sbjct: 413 LKAFWPGTMEE--YMELYARTYETVKRISPRLQIGAPGRIITIDGRKFYDEFFAF 465 >B1D623.1 B1D623_9BACL Transcriptional regulator, AraC family EC=3.2.1.37 Length = 833 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 171/553 (30%), Positives = 277/553 (50%), Gaps = 26/553 (4%) Query: 1 MEFRHEVISFPKQLPIKFFLHRIGQVNRHWHQSLELIINIKGSVHITVSNQSYELGAGDI 60 M + +E + LP++ F++ + + HWH+ +ELI ++G+V + V + Y L DI Sbjct: 1 MRYHYEFVETQDDLPVRLFVNSVKDIRFHWHKEIELIYVLQGAVTVYVDQRQYRLAEDDI 60 Query: 61 ILINSNEVHELHAE--DATMIALQIKLELLKEVSTDVQKMYYDCNSARSGHPDRFK--PL 116 I INS VH+L D ++ LQ ELL + T +DCNS +R++ L Sbjct: 61 IAINSMSVHKLECTNLDNVLLTLQFGPELLDDEGT-----LFDCNSMSQTEYNRYRYDRL 115 Query: 117 KRIVAQILKYNIHPNEYIDLKNISLVYELIYELGSNFS--TDGKDINSYSQENLDRLSRI 174 +R +A+++ + ++ + LI L F+ T+G + RL+RI Sbjct: 116 RRCLARMVWESNKKGPGHRNYSMGSLQTLIGHLTRYFTAGTNGGPREKGKDYDYMRLNRI 175 Query: 175 LDYVNSKYSDPISLQNMAKTEYLSVPYLSKYFKRNMGMSFSDYLKDIRLHHAVNDLLNES 234 + YV+ Y++ I+LQ +A E+LS+ Y S +F +G+ F YL IRL A L + Sbjct: 176 IQYVDKHYNEKITLQTIADQEHLSLHYFSHFFSDKIGIPFQKYLTLIRLEKAAAQLSDTD 235 Query: 235 LTIDKVAAQNGFPNVRSFVVAFTEKYGELPSVWRRKHAGEML-----GSIEATKEKSVNY 289 ++ ++A GF NV+ F F KYG P +R A + + S +Y Sbjct: 236 KSMTQIALDCGFANVKLFNQYFKGKYGSTPGSYRDALANAKTVDPDRKPLTTEESSSGDY 295 Query: 290 YQDEPLSYYEDITAFIESNLESAPV--DLPQRIGSSRTSLIKVPAAGS--GQGLRHHFKN 345 Y+ + +S E + ++ S PV DLP S ++ V A + H+ Sbjct: 296 YETDTISAMESLYRYLNDREGSPPVEHDLP----SDMRDMVDVQADACVREEVFIKHWNR 351 Query: 346 FIGVSRAKEVLLADVQQALRIAQAEIGFKYIKMHSLLDDDMMVYNEDAEGKPVYNFQFIE 405 RA E L D ++ Q + F +I+ H + +D+MMVY+ED GKPVYN+ +++ Sbjct: 352 VTTAGRAVEGLREDWRRQFAGMQGDFPFTHIRFHGIFNDEMMVYSEDEAGKPVYNWAYVD 411 Query: 406 RVFDFLLSIRLKPLVQFSFMPKKLASNLEKTVFYNHINTSPPKSIDKWNGLIRALTQHLI 465 +++DFLL + V+ SFMP L + E T+F+ SPP +KWNGL+R +H + Sbjct: 412 KLYDFLLQSGIHIFVELSFMPVLLRRSNE-TIFWWKGGISPPAEQEKWNGLVREFVRHCV 470 Query: 466 QRYGLEEVRSWLFCVWNEPSSSNLLFGFSHDDIFNQLYQNTYTTVKQIDSAIPFGGPAAF 525 RYGL EV+ W F VWNEP +++ + + ++ F Y+ T VK + + GGPA Sbjct: 471 NRYGLAEVKKWYFEVWNEPDLTDVCWSGTKEEYF-AFYEATANAVKSVSRELTVGGPALG 529 Query: 526 STYNKNEDWLFQF 538 N++W QF Sbjct: 530 YGSLWNDNWAEQF 542 >A8MEF5.1 A8MEF5_ALKOO Transcriptional regulator, AraC family Length = 854 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 168/556 (30%), Positives = 283/556 (50%), Gaps = 37/556 (6%) Query: 1 MEFRHEVISFPKQLPIKFFLHRIGQVNRHWHQSLELIINIKGSVHITVSNQSYELGAGDI 60 M+ E++++ + PI+ ++ I HWH ++E+++ ++G+V + V + Y L D+ Sbjct: 1 MDDGFELMNWQEDFPIRGSIYSIEGFKVHWHSAVEILLVLQGNVSLGVGDHKYLLKENDL 60 Query: 61 ILINSNEVHELH--AEDATMIALQIKLELLKEVSTDVQKMYYDCNSAR--SGHPDRFKPL 116 ILIN NE++ + ED +++LQI L + + ++ +DC S + ++F + Sbjct: 61 ILINYNEIYSITRGKEDNLLLSLQIDPVTLSQYDPNFSRLVFDCKSFMYCKDNQEKFDVV 120 Query: 117 KRIVAQIL--------KYNIHPNEYIDLKNISLVYELIYELGSNFSTDGKDINSYSQENL 168 + +A+++ Y + I L LV L E + ++ KD ++L Sbjct: 121 RYYMAKVVWEYSKKKPGYQLRIASNIHLLAAHLVNNLTNENLNQLKSEIKD------KDL 174 Query: 169 DRLSRILDYVNSKYSDPISLQNMAKTEYLSVPYLSKYFKRNMGMSFSDYLKDIRLHHAVN 228 RL RIL Y+N ISL+ +AK E++S YLS++ K N+G++F +Y+ +RL AVN Sbjct: 175 ARLKRILSYINENIDKKISLKTIAKNEHISYFYLSRFIKDNLGVTFQEYINTLRLDKAVN 234 Query: 229 DLLNESLTIDKVAAQNGFPNVRSFVVAFTEKYGELPSVWRRKH--AGEMLGSIEATKEKS 286 LL+ + TI +V+ ++GF N++ F F E +G P +++ H + E G ++ Sbjct: 235 LLLSSNKTITEVSYESGFANIKLFNKLFKETFGASPLQYKKIHKESSEQKGYSDSLHHGQ 294 Query: 287 VNYYQDEPLSYYEDITAFIESNLESAPVDL-PQRIGSSRTSLIKVPAAGSG--QGLRHHF 343 V+ E TAF + P+DL PQ +T+ I + S + L H++ Sbjct: 295 VS----RVCLGVERKTAFKKLLSYLKPMDLQPQLSDKYKTNRINISVDVSTIEEPLNHYW 350 Query: 344 KNFIGVSRAKEVLLADVQQALRIAQAEIGFKYIKMHSLLDDDMMVYNEDAEGKPVYNFQF 403 K S A E L + Q L+ Q E GF+YI++H + D MMV N VYN+ Sbjct: 351 KKLTTFSSASEGLRSQWQNQLKELQREGGFEYIRVHDVFSDRMMVCNFTEADTMVYNWSS 410 Query: 404 IERVFDFLLSIRLKPLVQFSFMPKKLASNLEKTVFYNHINTSPPKSIDKWNGLIRALTQH 463 ++ +FD S+ +KP + F+P KL + +++ +F N SP + ++ W L R +H Sbjct: 411 VDELFDLFKSVNIKPFIGLGFVPSKL-NKMDQPIFLWQDNRSPSQPMELWTELTREFIKH 469 Query: 464 LIQRYGLEEVRSWLFCVWNEPSSSNLLFGF----SHDDIFNQLYQNTYTTVKQIDSAIPF 519 I RYGL EV +W F VW EP L +GF + +D + Y+ T T+K I + Sbjct: 470 CINRYGLREVETWYFEVWKEPE---LPYGFWDGRNEEDF--EFYRQTALTIKSIAPTLKV 524 Query: 520 GGPAAFSTYNKNEDWL 535 GGP A N+ WL Sbjct: 525 GGPGATYHMNQQSYWL 540 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,198,607,795 Number of extensions: 134640843 Number of successful extensions: 361538 Number of sequences better than 1.0e-05: 1452 Number of HSP's gapped: 362071 Number of HSP's successfully gapped: 1452 Length of query: 571 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 430 Effective length of database: 1,732,333,088 Effective search space: 744903227840 Effective search space used: 744903227840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)