BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0263.0006.p (337 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0B5B8.1 C0B5B8_9FIRM Putative uncharacterized protein 116 2e-24 C0CR62.1 C0CR62_9FIRM Putative uncharacterized protein 113 3e-23 A6BJ11.1 A6BJ11_9FIRM Putative uncharacterized protein 110 2e-22 Q13MX2.1 Q13MX2_BURXL ABC sugar transporter, inner membrane subunit 105 4e-21 B2TCY3.1 B2TCY3_BURPP Monosaccharide-transporting ATPase EC=3.6.... 104 1e-20 >C0B5B8.1 C0B5B8_9FIRM Putative uncharacterized protein Length = 323 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 158/310 (50%), Gaps = 15/310 (4%) Query: 30 NTLIQYAGLALVIVVFAILTGGDLLSGFNLRTIIKQLAVLFTISVGMVFIFSHGGMDISV 89 +L+ GL ++ ++F +LT ++ N+ ++ Q+ V ++G+ FI + GG+D S Sbjct: 26 RSLLPIVGLVVIFLLFNVLTDFRMMG--NMSLVLSQVYVTMIAAMGVFFIMTMGGLDFSQ 83 Query: 90 GAVMALSSMTAVYTLNAGAPLAV--GILAAVAVSVICYLLNVLIAIQFGLMSVISSLSIM 147 G+++ +SS+ PLA+ GI + A+ + V I+ S I ++ M Sbjct: 84 GSILGISSIVVCILSQKSIPLAIIGGIASGAAIGALNGYFYVFRKIK----SFIVTICTM 139 Query: 148 FIARGLVTYNVSTTTEKLGVMDAEQLKLLGRNIPFLLIFLTAVGLI-GIVLFHYTKIGKH 206 F+ RG + Y TT + A KL+ + L I T V LI G + F YTK G + Sbjct: 140 FLFRGFIKY--FTTNAPV----AGSAKLINYDSTGLKIACTVVILIIGFIAFRYTKFGTY 193 Query: 207 NRAVGDNPLAAMQSGVQVKKAKITGYALAGVLVGFASILSLARSTVISENTGSGMEMDVI 266 +A+G AAM SG++ K K Y LAG + GFA+ +++ + ++ + G+ +E ++ Sbjct: 194 LKAIGAGEKAAMFSGIRTDKMKFLIYVLAGAITGFAAFINVIKVGSVTSSGGNQLETQIL 253 Query: 267 VAXXXXXXXXXXXXKAKMSSAIVGSITYILLNNGLVMVGVATEVVSLVKGIXXXXXXXXX 326 +A K + + +VGS+ YI+LN+GL M+G T+++ L++G+ Sbjct: 254 IALVLGGMPISGGAKVRFENIVVGSLLYIVLNSGLTMMGFTTQMMQLIQGVVFLIFVAVF 313 Query: 327 XKRPSSEVMP 336 R S +V+ Sbjct: 314 ADRESIQVIK 323 >C0CR62.1 C0CR62_9FIRM Putative uncharacterized protein Length = 323 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 158/306 (51%), Gaps = 10/306 (3%) Query: 32 LIQYAGLALVIVVFAILTGGDLLSGFNLRTIIKQLAVLFTISVGMVFIFSHGGMDISVGA 91 L+ GL + ++F LTGG ++S NL ++ Q+ V S+G+ F+ S GG+D S G+ Sbjct: 27 LLPVVGLIAIFILFNALTGGRMISNMNL--VLSQVYVTMIASMGVFFVMSMGGLDFSQGS 84 Query: 92 VMALSSMTAVYTLNAGAPLAVGILAAVAVSVICYLLNVLIAIQFGLMSVISSLSIMFIAR 151 ++ ++S+ V TL+ L + IL + +N + + S I ++ MF+ R Sbjct: 85 ILGIASIV-VCTLSQSYGLPIAILGGIVTGAAIGAINGFFYVNRKIKSFIVTICTMFLFR 143 Query: 152 GLVTYNVSTTTEKLGVMDAEQLKLLGRNIPFLLIFLTAVGL-IGIVLFHYTKIGKHNRAV 210 G++ Y TT + A L+ + L + T + L IG ++F YTK G + +A+ Sbjct: 144 GVIKY--LTTDAPV----AGSATLINYDTTVLKLTCTLIVLVIGFIVFRYTKFGIYLKAI 197 Query: 211 GDNPLAAMQSGVQVKKAKITGYALAGVLVGFASILSLARSTVISENTGSGMEMDVIVAXX 270 G AA +G++ K K Y LAG + GFA+ +++ + ++ + G+ +E +++A Sbjct: 198 GAGEKAAKFAGIRTDKMKFLIYVLAGAITGFAAFINVIKVGSVTSSGGNQLETQILIALV 257 Query: 271 XXXXXXXXXXKAKMSSAIVGSITYILLNNGLVMVGVATEVVSLVKGIXXXXXXXXXXKRP 330 + + IVGS+ +I+L +GL M+G++T+++ L++GI R Sbjct: 258 LGGMPISGGANVRFENIIVGSMLFIVLQSGLTMMGISTQMLQLIEGIVFLVFVAVFADRK 317 Query: 331 SSEVMP 336 S +V+ Sbjct: 318 SLQVVK 323 >A6BJ11.1 A6BJ11_9FIRM Putative uncharacterized protein Length = 323 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 153/305 (50%), Gaps = 9/305 (2%) Query: 32 LIQYAGLALVIVVFAILTGGDLLSGFNLRTIIKQLAVLFTISVGMVFIFSHGGMDISVGA 91 L+ GL ++ ++F +LT ++ N+ Q+ V ++G+ FI + GG+D S G+ Sbjct: 28 LLPIVGLVVIFLLFNVLTDFRMMG--NMSLAFSQVYVTMIAAMGVFFIMTMGGLDFSQGS 85 Query: 92 VMALSSMTAVYTLNAGAPLAVGILAAVAVSVICYLLNVLIAIQFGLMSVISSLSIMFIAR 151 ++ ++S+ G +A+ IL +A VI +N + + S I ++ MF+ R Sbjct: 86 ILGIASIVVCILSKHG--IAIAILGGIASGVIIGAINGYFYVYRKIKSFIVTICTMFLFR 143 Query: 152 GLVTYNVSTTTEKLGVMDAEQLKLLGRNIPFLLIFLTAVGLIGIVLFHYTKIGKHNRAVG 211 G + Y ++T G G + ++ L +IG + F YTK G + +A+G Sbjct: 144 GFIKY-MTTNAPVSGSATLINYDSTGFKVACTVVVL----VIGFIAFRYTKFGTYLKAIG 198 Query: 212 DNPLAAMQSGVQVKKAKITGYALAGVLVGFASILSLARSTVISENTGSGMEMDVIVAXXX 271 AAM SG++ + K Y LAG L GFA+ +++ + ++ + G+ +E +++A Sbjct: 199 AGEKAAMFSGIRTDRMKFLMYVLAGALTGFAAFINVIKVGSVTSSGGNQLETQILIALVL 258 Query: 272 XXXXXXXXXKAKMSSAIVGSITYILLNNGLVMVGVATEVVSLVKGIXXXXXXXXXXKRPS 331 K + + +VGS+ Y++LN+GL M+G +T+++ L++G+ R S Sbjct: 259 GGMPISGGAKVRFENIVVGSLLYVVLNSGLTMMGFSTQMMQLIQGVVFLIFVAVFADRES 318 Query: 332 SEVMP 336 V+ Sbjct: 319 LTVIK 323 >Q13MX2.1 Q13MX2_BURXL ABC sugar transporter, inner membrane subunit Length = 333 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 22/328 (6%) Query: 5 NTATKGKRSSMGESPGIAGFLKNNKNTLIQ-------YAGLALVIVVFAILTGGDLLSGF 57 N + S SP L+ L+Q YA A+++VVF+ + LS Sbjct: 2 NESVSPLTSERQASPPQKSRLRRIARALLQGDRPYALYAAFAILLVVFSFASPW-FLSID 60 Query: 58 NLRTIIKQLAVLFTISVGMVFIFSHGGMDISVGAVMALSSMTAVYTLNA-GAPLAVGILA 116 N I +Q A++ I++GM F+ +D+SVG+ +ALS M+A + G +G LA Sbjct: 61 NFLNIGRQTALVSIIAIGMTFVIIARQIDLSVGSTLALSGMSAALAMTYLGNNWVIGALA 120 Query: 117 AVAVSVICYLLNVLIAIQFGLMSVISSLSIMFIARGLVTYNVSTTTEKLGVMDAEQL--- 173 + I +N ++ + + S + +L + ARGL + TT K ++D + Sbjct: 121 GIGTGAIVGAINGIVTTRVNIPSFLVTLGTLSAARGLA---LMVTTTKPVIIDNDSFIAI 177 Query: 174 ----KLLGRNIPFLLIFLTAVGLIGIVLFHYTKIGKHNRAVGDNPLAAMQSGVQVKKAKI 229 + G +P + L + GI+L HY+ G+ A G NP AA+ SG+ ++ Sbjct: 178 FGEGDIFGVPVPIIWTVLAVIA--GILLLHYSVFGRQIYAAGGNPTAALYSGINTRRVTT 235 Query: 230 TGYALAGVLVGFASILSLARSTVISENTGSGMEMDVIVAXXXXXXXXXXXXKAKMSSAIV 289 + L G+L G A+++ ARS + GME+DVI A + + ++ Sbjct: 236 LAFILTGMLAGLAALVLSARSHAARPDVVQGMELDVI-ASVTLGGCSLFGGRGFVLGTLL 294 Query: 290 GSITYILLNNGLVMVGVATEVVSLVKGI 317 GS+ LNNGLV++GV++ + ++KG+ Sbjct: 295 GSLIIGTLNNGLVLLGVSSSLQLVIKGV 322 >B2TCY3.1 B2TCY3_BURPP Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 333 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 15/291 (5%) Query: 35 YAGLALVIVVFAILTGGDLLSGFNLRTIIKQLAVLFTISVGMVFIFSHGGMDISVGAVMA 94 YA A+++VVF+ + LS N I +Q A++ I++GM F+ +D+SVG+ +A Sbjct: 39 YAAFAILLVVFSFASPW-FLSIDNFLNIGRQTALVSIIAIGMTFVIIARQIDLSVGSTLA 97 Query: 95 LSSMTAVYTLN-AGAPLAVGILAAVAVSVICYLLNVLIAIQFGLMSVISSLSIMFIARGL 153 LS M+A + G +G +A + I +N ++ + + S + +L + ARGL Sbjct: 98 LSGMSAALAMAYVGNNWVIGAIAGIGTGAIVGAINGIVTTRVNIPSFLVTLGTLSAARGL 157 Query: 154 VTYNVSTTTEKLGVMDAEQL-------KLLGRNIPFLLIFLTAVGLIGIVLFHYTKIGKH 206 + TT K ++D + + G +P + L + GI+L HY+ G+ Sbjct: 158 A---LMVTTTKPVIIDNDSFISIFGEGDIFGVPVPIIWTLLAVIA--GILLLHYSVFGRQ 212 Query: 207 NRAVGDNPLAAMQSGVQVKKAKITGYALAGVLVGFASILSLARSTVISENTGSGMEMDVI 266 A G NP AA+ SG+ ++ + L G+L G A+++ ARS + GME+DVI Sbjct: 213 IYAAGGNPTAALYSGINTRRVTTLAFILTGMLAGLAALVLSARSHAARPDVVQGMELDVI 272 Query: 267 VAXXXXXXXXXXXXKAKMSSAIVGSITYILLNNGLVMVGVATEVVSLVKGI 317 A + + ++GS+ LNNGLV++GV++ + ++KG+ Sbjct: 273 -ASVTLGGCSLFGGRGFVLGTLLGSLIIGTLNNGLVLLGVSSSLQLVIKGV 322 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,577,305,832 Number of extensions: 58160515 Number of successful extensions: 221613 Number of sequences better than 1.0e-05: 4329 Number of HSP's gapped: 216148 Number of HSP's successfully gapped: 4517 Length of query: 337 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 201 Effective length of database: 1,779,438,163 Effective search space: 357667070763 Effective search space used: 357667070763 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)