BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0263.0004.p
         (328 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6BJ13.1 A6BJ13_9FIRM Putative uncharacterized protein                 67   2e-09
C0B5B6.1 C0B5B6_9FIRM Putative uncharacterized protein                 62   1e-07
C0CR64.1 C0CR64_9FIRM Putative uncharacterized protein                 57   3e-06

>A6BJ13.1 A6BJ13_9FIRM Putative uncharacterized protein
          Length = 305

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 12/265 (4%)

Query: 42  GAFDRII---RSSVLSTIIAYAIALPLSGARWDFAPXXXXXXXXXXXXNLAIDLNAGPLT 98
           G+F  ++   ++S+++T+ A      +    +DF+              LA   N G   
Sbjct: 26  GSFSNMLNYFQASLIATVGAVGFYFVMVMGMFDFSIGANIMLSAIVGCVLATKFNLGYFG 85

Query: 99  LLFITAGI--AVVLSLLEGVLYLAIRVPTIIVSLGVVMVYEALSGVVYGGSGTQLYMHPE 156
           L  I  GI    ++ LL G+ Y+ +R+P++IV+ G+ ++YE+L+  + GG    L  H  
Sbjct: 86  L--IVGGILTGTIVGLLNGIFYVKLRIPSMIVTTGLALIYESLANYMAGGVEQTLPAH-- 141

Query: 157 LTVFARSPWIYMVLAVIMVLFYFLLGRTKFGFDTRSLAANPRLAVNMGVKEKKNIMITYL 216
           L  F R PW  ++  V  V+ Y  L  TK G  T ++ ++  +A NMG+   K  ++ ++
Sbjct: 142 LRAFGRMPWDIILALVACVVAYIFLNYTKIGTYTYAIGSDEFVAKNMGINVNKYKVLAFI 201

Query: 217 TXXXXXXXXXXINAS--TVLVSPANNLSSTSLMFSSMGPVLVGLYLARFSNIPLGIFAGA 274
                      +  S  + +V+     S +     +MG    GL   ++      I  G 
Sbjct: 202 LSGAFLGVMAILTISYGSSMVAVTGMASMSRNFVPTMG-CFFGLAFKKYGMPLQAIIIGE 260

Query: 275 LGMNALSYGMVILGIDSSMQTVNLG 299
             +N + +G + LG  +++Q V  G
Sbjct: 261 FVINIIFFGFIALGAPTAIQDVITG 285


>C0B5B6.1 C0B5B6_9FIRM Putative uncharacterized protein
          Length = 254

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 109/230 (47%), Gaps = 7/230 (3%)

Query: 88  LAIDLNAGPLTLLFITAGIAVVLSLLEGVLYLAIRVPTIIVSLGVVMVYEALSGVVYGGS 147
            A   N G L L+        ++ +L G+ Y+ +R+P++IV+ G+ ++YE+++  + G  
Sbjct: 24  FATRFNMGYLGLIIGCVLTGAIVGILNGIFYVKLRIPSMIVTTGLALIYESIANYIAG-- 81

Query: 148 GTQLYMHPELTVFARSPWIYMVLAVIMVLFYFLLGRTKFGFDTRSLAANPRLAVNMGVKE 207
           G +  +   +  F + PW  ++  V  V+ Y  L  TK G  T ++ ++  +A NMG+  
Sbjct: 82  GVEQTLPANIRAFGQMPWDIILALVACVVAYIFLNYTKIGTYTYAIGSDEFVAKNMGINV 141

Query: 208 KKNIMITYLTXXXXXXXXXXINAS--TVLVSPANNLSSTSLMFSSMGPVLVGLYLARFSN 265
            K  ++ ++           +  S  + +V+     S +     +MG    GL   ++  
Sbjct: 142 NKYKVLAFILSGAFLGVMAILTISYGSSMVAVTGMASMSRNFVPTMG-CFFGLAFKKYG- 199

Query: 266 IPL-GIFAGALGMNALSYGMVILGIDSSMQTVNLGVFIVAFMGYTSNQEK 314
           +PL  I  G   +N + +G + LG  +++Q V  G+ ++  +  T+   K
Sbjct: 200 MPLPAIIIGEFVINIIFFGFIALGAPTAIQDVITGLALLIIITVTTKATK 249


>C0CR64.1 C0CR64_9FIRM Putative uncharacterized protein
          Length = 318

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 19/215 (8%)

Query: 109 VLSLLEGVLYLAIRVPTIIVSLGVVMVYEALSGVVYGGSGTQLYMHPELTVFARSPWIYM 168
           ++ L+ G  Y+ +R+P++IV+ G+ ++YE+++  + G  G +  +  ++  F   P   +
Sbjct: 109 LIGLINGAFYVKLRIPSMIVTTGLALIYESVANYIAG--GVEQTLPSDMRAFGSMPGNII 166

Query: 169 VLAVIMVLFYFLLGRTKFGFDTRSLAANPRLAVNMGVKEKKNIMITYLTXXXXXXXXXXI 228
           +  +  +  Y  L  TK G  T ++ +N  +A NMG+   K  +I +L           +
Sbjct: 167 LAVLAFIAAYIFLNYTKVGTYTYAIGSNEFVAKNMGINVNKYKVIAFLISGAFFGVEAIL 226

Query: 229 NAS--------TVLVSPANNLSSTSLMFSSMGPVLVGLYLARFSNIPL-GIFAGALGMNA 279
           + S        T + S A N + T   F  M          R   IP+  I  G   +N 
Sbjct: 227 SISYGSSMVAVTGMASMARNFTPTMGCFFGMA--------FRKYGIPIQAIIIGEFVINI 278

Query: 280 LSYGMVILGIDSSMQTVNLGVFIVAFMGYTSNQEK 314
           + YG + LG  +++Q V  G+ ++  +  T+  +K
Sbjct: 279 IFYGFIALGAPTAIQDVITGLALLIIITLTTKVDK 313


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,625,332,975
Number of extensions: 60635008
Number of successful extensions: 233496
Number of sequences better than 1.0e-05: 283
Number of HSP's gapped: 234743
Number of HSP's successfully gapped: 283
Length of query: 328
Length of database: 3,060,696,203
Length adjustment: 136
Effective length of query: 192
Effective length of database: 1,779,438,163
Effective search space: 341652127296
Effective search space used: 341652127296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)