BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0262.0003.p (523 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1I4H9.1 C1I4H9_9CLOT DNA integration/recombination protein 339 4e-91 B7R6E0.1 B7R6E0_9THEO Recombinase family protein 321 1e-85 B0K4R6.1 B0K4R6_THEPX Recombinase 320 3e-85 A8SBK5.1 A8SBK5_9FIRM Putative uncharacterized protein 289 5e-76 A7VXB6.1 A7VXB6_9CLOT Putative uncharacterized protein 270 2e-70 >C1I4H9.1 C1I4H9_9CLOT DNA integration/recombination protein Length = 526 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 201/497 (40%), Positives = 300/497 (60%), Gaps = 19/497 (3%) Query: 8 ISMPSTNKLIRAVAYPRYSSDNQREESIVAQMRAIEAYCQQKGYVLVNAYPDEEKTATTD 67 + P+ ++ RA AY RYSSDNQR+ES+ AQ+RAI+ + KGY +V Y D+ K+ATTD Sbjct: 1 MGQPNYLEIKRACAYIRYSSDNQRDESLEAQIRAIKEFGYAKGYEIVKVYQDKAKSATTD 60 Query: 68 RRPNFQRMIEDSNKKLFDVVIVHKLDRFARNRYDSAHYKRVLKRNGVRVESVLEHLDNSP 127 RRP FQ+MI+DS +FDVVIVHKLDRF+R++YDSA YKR LK+NGV++ SV E+LD+SP Sbjct: 61 RRPGFQQMIKDSANDIFDVVIVHKLDRFSRDKYDSAQYKRKLKQNGVKLVSVTENLDDSP 120 Query: 128 ESVILESVLEGMAEYYSLNLSREVRKGLRENAEQGTHTGGRPPYGLKVNPVTRMLEIDEQ 187 ESVILESV+EGMAEYYS NL+REV KG++E A Q HTGG PP G VN + + I+E+ Sbjct: 121 ESVILESVIEGMAEYYSKNLAREVMKGMKETAYQAKHTGGLPPLGYDVNAEKKYV-INER 179 Query: 188 TYKAVQIYFDGIEADLSNDQIAAILNEKGYRTLNDRSFTSSSFATWGHNRKYKGDYTYDV 247 ++V++ F+ A + Q+ LN +G++T F +S + N KY G Y ++ Sbjct: 180 EAESVRLIFEMYTARYTLSQMVDELNSRGFKTKAGAIFKHNSINSVLTNEKYTGVYIFNK 239 Query: 248 SAPKDEDGKRNTNNKKPQEEQVLHEGRIPAIISSEQWDRVYRKLQDRKRKPGRMKAKVNY 307 SA KD G+RN++ +K Q E + EG +P II E +++ L+ RK+ KAK +Y Sbjct: 240 SAKKDAYGRRNSHLQKDQSEIIRIEGGMPQIIDKELYEKAQEILRSRKKSKAVNKAKESY 299 Query: 308 LLTGKIYCGACGALYSGNSYTNKKSSEGTVLTYYKC-------QDKCGNTSVRKDDIEAM 360 LL+G I CG CG GN +++ + Y+C + C N +RK+ IE Sbjct: 300 LLSGIIKCGECGYAMYGN---RRQARSKPLYVSYRCGCRKRTSSNVCSNKEIRKEYIEEY 356 Query: 361 VIQRLIEVCFSGEGIQEIIDKVQELYQKEKQQSVNDIEPIKRELAELEGKLKNWIEALGA 420 V+ L E F+ + I +++ + E +K+ + + I++EL ++E ++ N + A+ Sbjct: 357 VLAELEERIFNDKSIPLLVEGINEELKKQSEGDEDKRGIIEKELKDIEKQIGNIVMAITN 416 Query: 421 G-----IKTVIENIKQAEQRKEALEYELDRAEVMQRVAVLDDTQIRSIIEMKKNLLLSGN 475 G K +E +K +RK LE +L E Q V + + IR ++ K ++S N Sbjct: 417 GFIQEEFKVKMEELK---ERKAYLEGKLVDIEASQSVTKVTEEDIRGLLAGFKEYVVSKN 473 Query: 476 EDEKKQVLQEYVDRVVI 492 E K +Q++V VV+ Sbjct: 474 IPECKNFIQDFVKEVVV 490 >B7R6E0.1 B7R6E0_9THEO Recombinase family protein Length = 506 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 203/517 (39%), Positives = 287/517 (55%), Gaps = 27/517 (5%) Query: 17 IRAVAYPRYSSDNQREESIVAQMRAIEAYCQQKGYVLVNAYPDEEKTATTDRRPNFQRMI 76 +RA AY RYSSDNQREESI AQ+RAI+ YC++ LV Y DE K+ATTD RP F +MI Sbjct: 6 LRAAAYARYSSDNQREESIEAQLRAIKEYCEKNNIQLVKIYTDEAKSATTDDRPAFLQMI 65 Query: 77 EDSNKKLFDVVIVHKLDRFARNRYDSAHYKRVLKRNGVRVESVLEHLDNSPESVILESVL 136 +DS+ LF+ VIVHKLDRFARNRYDSA Y+R LK+NGV++ SVLE LD+SPES+ILESVL Sbjct: 66 KDSSLGLFNAVIVHKLDRFARNRYDSAFYRRQLKKNGVKLISVLEQLDDSPESIILESVL 125 Query: 137 EGMAEYYSLNLSREVRKGLRENAEQGTHTGGRPPYGLKVNPVTRMLEIDEQTYKAVQIYF 196 EGMAEYYS NL+REV KGL+ENA Q GG PP G + V I+E+ +AV++ F Sbjct: 126 EGMAEYYSKNLAREVMKGLKENAFQAKFNGGIPPLGYDI--VDGKYVINEKEAEAVRLIF 183 Query: 197 DGIEADLSNDQIAAILNEKGYRTLNDRSFTSSSFATWGHNRKYKGDYTYDVSAPKDEDGK 256 + QI LN +GYRT F+ +S N KY G Y ++ K Sbjct: 184 ELYAQGYGYRQIIDELNLRGYRTKKGNPFSKNSIHEILKNEKYTGKYIFNKGTKK----- 238 Query: 257 RNTNNKKPQEEQVLHEGRIPAIISSEQWDRVYRKLQDRKRKPGRMKAKVNYLLTGKIYCG 316 N++ +E+ ++ E IPAII + + +V K+++RK G AK YLL+G +YCG Sbjct: 239 ---NHRMVKEDVIVIENAIPAIIDEDLFKKVQEKMKERKITRGANSAKRVYLLSGLVYCG 295 Query: 317 ACGALYSGNSYTNKKSSEGTVLTYYKCQDK-----CGNTSVRKDDIEAMVIQRLIEVCFS 371 CG+ G S G +T Y+C K C N + K+ +EA VI L + Sbjct: 296 VCGSKMVGC------LSRGKYVT-YRCSRKDRTKQCTNRDINKEKVEAFVIDELNKRILD 348 Query: 372 GEGIQEIIDKVQELYQKEKQQSVNDIEPIKRELAELEGKLKNWIEALGAGIKTVI--ENI 429 + + + E QK ++ +I +K+ E+E ++KN +EA+ G+ I E + Sbjct: 349 PKVAPILARLLNEENQKLNREKAEEIAFLKKRYKEVEEQMKNIVEAIAQGMFQPIMKEKM 408 Query: 430 KQAEQRKEALEYELDRAEVMQRVAVLDDTQIRSIIEMKKNLLLSGNE-DEKKQVLQEYVD 488 + E + L Y + E + + + I I E + ++ S + E K+VL+ Y+ Sbjct: 409 NELEAMRNELAYRIKELENKKETSFITPEMILKIFEKDREIINSSKDPHEIKEVLKNYIK 468 Query: 489 RVVIQPSSDINRFEAEI--TYRVFTNGAEGSRTPVRR 523 ++++ P F I +R A G P R Sbjct: 469 KIIVTPDEIKCEFYFWIGDDFRSLLVAASGFEPPTLR 505 >B0K4R6.1 B0K4R6_THEPX Recombinase Length = 506 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 202/517 (39%), Positives = 288/517 (55%), Gaps = 27/517 (5%) Query: 17 IRAVAYPRYSSDNQREESIVAQMRAIEAYCQQKGYVLVNAYPDEEKTATTDRRPNFQRMI 76 IRA AY RYSSDNQREESI AQ+RAI+ YC++ LV Y DE K+ATTD RP F +MI Sbjct: 6 IRAAAYARYSSDNQREESIEAQLRAIKEYCEKNNIQLVKIYTDEAKSATTDDRPAFLQMI 65 Query: 77 EDSNKKLFDVVIVHKLDRFARNRYDSAHYKRVLKRNGVRVESVLEHLDNSPESVILESVL 136 +DS+ LF+ VIVHKLDRFARNRYDSA Y+R LK+NGV++ SVLE LD+SPES+ILESVL Sbjct: 66 KDSSLGLFNAVIVHKLDRFARNRYDSAFYRRQLKKNGVKLISVLEQLDDSPESIILESVL 125 Query: 137 EGMAEYYSLNLSREVRKGLRENAEQGTHTGGRPPYGLKVNPVTRMLEIDEQTYKAVQIYF 196 EGMAEYYS NL+REV KGL+ENA Q GG PP G + V I+E+ +AV++ F Sbjct: 126 EGMAEYYSKNLAREVMKGLKENAFQAKFNGGIPPLGYDI--VDEKYVINEKEAEAVRLIF 183 Query: 197 DGIEADLSNDQIAAILNEKGYRTLNDRSFTSSSFATWGHNRKYKGDYTYDVSAPKDEDGK 256 + I LN +GYRT F+ +S N KY G Y ++ K Sbjct: 184 ELYAQGYGYRHIIDELNLRGYRTKKGNPFSKNSIHEILKNEKYIGKYIFNKGTKK----- 238 Query: 257 RNTNNKKPQEEQVLHEGRIPAIISSEQWDRVYRKLQDRKRKPGRMKAKVNYLLTGKIYCG 316 N++ +E+ ++ + IPAII + +++V +K+++RK G AK YLL+G +YCG Sbjct: 239 ---NHRMVKEDVIVIDNAIPAIIDKDLFEQVQKKIEERKITRGANSAKRVYLLSGLVYCG 295 Query: 317 ACGALYSGNSYTNKKSSEGTVLTYYKCQDK-----CGNTSVRKDDIEAMVIQRLIEVCFS 371 C + G S G +T Y+C K C N + K+ +EA VI L + Sbjct: 296 ICDSKMVGC------LSRGKYVT-YRCSRKDRTKQCTNRDINKEKLEAFVIDELNKRVLD 348 Query: 372 GEGIQEIIDKVQELYQKEKQQSVNDIEPIKRELAELEGKLKNWIEALGAGIKTVI--ENI 429 + + + E QK ++ V +I +K+ E+E ++KN +EA+ G+ I E + Sbjct: 349 PKVAPVLAKLLNEENQKLNKERVEEITLLKKRYKEVEEQMKNIVEAIAQGMFQPIMKEKM 408 Query: 430 KQAEQRKEALEYELDRAEVMQRVAVLDDTQIRSIIEMKKNLLLSGNE-DEKKQVLQEYVD 488 + E + L Y + E + + + I I E + ++ S + E K+VL+ Y+ Sbjct: 409 NELEAMRNELAYRIKELENKKETSFITPEMILKIFEKDREIINSSKDPHEIKEVLKNYIK 468 Query: 489 RVVIQPSSDINRFEAEI--TYRVFTNGAEGSRTPVRR 523 ++++ P F I +R A G P R Sbjct: 469 KIIVTPDEIKCEFYFWIGDDFRSLLVAASGFEPPTLR 505 >A8SBK5.1 A8SBK5_9FIRM Putative uncharacterized protein Length = 565 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 183/488 (37%), Positives = 268/488 (54%), Gaps = 45/488 (9%) Query: 17 IRAVAYPRYSSDNQREESIVAQMRAIEAYCQQKGYVLVNAYPDEEKTATTDRRPNFQRMI 76 + AV Y RYSSD+QRE SI Q+R + Y ++ G +V Y D +A TD RP+FQRMI Sbjct: 71 MTAVIYARYSSDSQREASIEGQLRDCKDYAEKNGITVVGTYIDRAYSAKTDDRPDFQRMI 130 Query: 77 EDSNKKLFDVVIVHKLDRFARNRYDSAHYKRVLKRNGVRVESVLEHLDNSPESVILESVL 136 +DS KK+FDVV+V KLDRFARNR+D+ +YK L++NGV + S +E + PE +++ES+L Sbjct: 131 KDSGKKIFDVVLVWKLDRFARNRFDAVNYKYQLEKNGVHLVSAMEPISQGPEGIMVESML 190 Query: 137 EGMAEYYSLNLSREVRKGLRENAEQGTHTGGRPPYGLKVNPVTRMLEIDEQTYKAVQIYF 196 GMAEYYS L+ +V +G RENA Q + GG P G + R+ ID +T VQ F Sbjct: 191 IGMAEYYSAELALKVARGERENALQCKYNGGVVPLGFTIGKEDRLYHIDPETAPIVQEIF 250 Query: 197 DGIEADLSNDQIAAILNEKGYRTLNDRSFTSSSFATWGHNRKYKGDYTY-DVSAPKDEDG 255 ++IAA LNE+G RT + F +SF NR+Y G+Y Y D+ P Sbjct: 251 TRYADGEPAEKIAASLNERGLRTRTGKPFVKNSFFQIFRNRRYIGEYRYKDIVTP----- 305 Query: 256 KRNTNNKKPQEEQVLHEGRIPAIISSEQWDRVYRKLQDRKRKPGR-MKAKVNYLLTGKIY 314 G IPAI+ + +DRV ++ + + GR K V+YLLT K++ Sbjct: 306 -----------------GGIPAIVDQDLFDRVQQRFEQNRIAHGRPAKEDVSYLLTTKLF 348 Query: 315 CGACGALYSGNSYTNKKSSEGTVLTYYKCQD-------KCGNTSVRKDDIEAMVIQRLIE 367 CG CG L G S T S G YYKC + C ++RK+ +E V+ I+ Sbjct: 349 CGKCGTLMGGESGT---SHMGNTYYYYKCGNAKRHGKAHCDLKAIRKEPLERFVVDTAIK 405 Query: 368 VCFSGEGIQEIIDKVQELYQKEKQQSVNDIEPIKRELAELEGKLKNWIEALGAGI--KTV 425 V FS E I+ +ID V + QKE + + +K +L + E +L N +EA+ GI T Sbjct: 406 VIFSDEIIERLIDLVMDAQQKENTR----LPVLKEQLRDTEKRLANLLEAIEQGILTPTT 461 Query: 426 IENIKQAEQRKEALEYELDRAEVMQRVAVLDDTQIRSIIE-MKKNLLLSGNEDEKKQVLQ 484 + + + E RKEAL + E+ + VL IR +E +K + G+ + ++Q++ Sbjct: 462 KQRLDELEARKEALNTSILEEELKK--PVLTREWIRFWLEKFRKGDV--GSTEHQRQIID 517 Query: 485 EYVDRVVI 492 +V+ V + Sbjct: 518 TFVNSVYV 525 >A7VXB6.1 A7VXB6_9CLOT Putative uncharacterized protein Length = 528 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 170/433 (39%), Positives = 244/433 (56%), Gaps = 39/433 (9%) Query: 17 IRAVAYPRYSSDNQREESIVAQMRAIEAYCQQKGYVLVNAYPDEEKTATTDRRPNFQRMI 76 ++AV Y RYSSDNQREESI Q+R A+ ++ G ++ Y D +A TD RP FQ MI Sbjct: 1 MKAVIYARYSSDNQREESIEGQIRECTAFAEKNGITILRHYIDRAFSAKTDNRPEFQNMI 60 Query: 77 EDSNKKLFDVVIVHKLDRFARNRYDSAHYKRVLKRNGVRVESVLEHLDNSPESVILESVL 136 +DS K+LFD++IV KLDRFARNRYDSA YK VLK+NGV+V S E + + E +ILESVL Sbjct: 61 KDSGKRLFDMIIVWKLDRFARNRYDSARYKAVLKKNGVKVVSATEVISDGAEGIILESVL 120 Query: 137 EGMAEYYSLNLSREVRKGLRENAEQGTHTGGRPPYGLKVNPVTRMLEIDEQTYKAVQIYF 196 EG AEYYS +LS +V +G+ ENA + GG P G +++ + ++D T V+ F Sbjct: 121 EGYAEYYSADLSEKVVRGMTENALKCKFNGGTLPIGYQIDS-DQHFQLDPLTAPFVREAF 179 Query: 197 DGIEADLSNDQIAAILNEKGYRTLNDRSFTSSSFATWGHNRKYKGDYTY-DVSAPKDEDG 255 + + QI LNEKG + + T +S +NR+Y G+YTY D+ P DG Sbjct: 180 QRYDERATMTQIRDWLNEKGVKNTRGQKMTYNSIQHLLNNRRYIGEYTYRDIVVP---DG 236 Query: 256 KRNTNNKKPQEEQVLHEGRIPAIISSEQWDRVYRKLQDRKRKPGRMKAKVNYLLTGKIYC 315 I AI+ + +DRV KL K+ P R KA+ +YLLT K++C Sbjct: 237 -------------------ISAIVPQDLFDRVQEKLAKNKKAPARHKAEDDYLLTTKLFC 277 Query: 316 GACGALYSGNSYTNKKSSEGTVLTYYKC------QDKCGNTSVRKDDIEAMVIQRLIEVC 369 G CGA G S T S G V YYKC + +C SVRK+ IE +V+ +++ Sbjct: 278 GYCGAYLCGESGT---SHTGNVHHYYKCVSVKKKRTECHKKSVRKEWIEDLVVSETMKMV 334 Query: 370 FSGEGIQEIIDKVQELYQKEKQQSVNDIEPIKRELAELEGKLKNWIEALGAGI--KTVIE 427 I+ I+ + +L +E +VN + +++L E + ++N + A+ GI K+ Sbjct: 335 MDDTAIEAIVSMLMDLQDRE---NVN-LPLYEQQLREADTAIQNLLNAIQQGILTKSTKG 390 Query: 428 NIKQAEQRKEALE 440 +++ E KE LE Sbjct: 391 RLEELEATKEELE 403 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,013,790,091 Number of extensions: 126600820 Number of successful extensions: 360196 Number of sequences better than 1.0e-05: 1345 Number of HSP's gapped: 358645 Number of HSP's successfully gapped: 1361 Length of query: 523 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 383 Effective length of database: 1,741,754,103 Effective search space: 667091821449 Effective search space used: 667091821449 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)