BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0261.0009.p
         (114 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIV0.1 B3KIV0_9BACI Helix-turn-helix domain protein                 134   2e-30
B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein                125   2e-27
B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein                 115   1e-24
A9U7T8.1 A9U7T8_PHYPA Predicted protein (Fragment)                     96   8e-19
C0ZDG0.1 C0ZDG0_BREBN Putative DNA-binding protein                     69   1e-10

>B3KIV0.1 B3KIV0_9BACI Helix-turn-helix domain protein
          Length = 181

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 85/107 (79%)

Query: 1   MNHLERITKGMELPEDHFYSLYVDECFYYSSPTWRRLRPFLLRSAELGRLDCVEQVVQNL 60
           M  L+RIT GM L E +FY LY+DEC ++++P WRRL PFL R AELG+LDC+++ V+  
Sbjct: 48  MQQLDRITSGMGLEEGYFYELYIDECIFHATPDWRRLGPFLHRCAELGKLDCLDKAVRMT 107

Query: 61  LENLTYAPMLFEVAEGLFQEGLWQAAALLYKNVSASEKYQNSERLAV 107
           ++N++Y+P+LFE AE  F+EG  +AA LLY++V+ SE++Q+SERLA+
Sbjct: 108 MDNISYSPLLFETAELFFKEGKHEAAVLLYRSVAESERFQHSERLAL 154


>B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein
          Length = 414

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 80/107 (74%)

Query: 1   MNHLERITKGMELPEDHFYSLYVDECFYYSSPTWRRLRPFLLRSAELGRLDCVEQVVQNL 60
           M+ L+RIT+GM L E HFY+LY+ E  ++++P WRRLRPFL R AEL +LDC+ +  +  
Sbjct: 3   MHQLDRITEGMGLEEGHFYNLYITESIFHTTPDWRRLRPFLKRCAELDKLDCLHRTARMT 62

Query: 61  LENLTYAPMLFEVAEGLFQEGLWQAAALLYKNVSASEKYQNSERLAV 107
           LEN+ Y PMLFE+AE LF E  ++AAALLY+ V+  EK Q SERLA+
Sbjct: 63  LENINYVPMLFEMAEELFIEEKYKAAALLYECVAECEKLQYSERLAL 109


>B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein
          Length = 467

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 79/107 (73%)

Query: 1   MNHLERITKGMELPEDHFYSLYVDECFYYSSPTWRRLRPFLLRSAELGRLDCVEQVVQNL 60
           +++L+ +T+ M L E +FYS Y  EC   SSP WRRL PF++R AEL +L C++Q+V  +
Sbjct: 49  VSNLDLVTEAMNLEEGYFYSFYAYECMIQSSPNWRRLGPFIMRCAELNKLKCLDQLVGMM 108

Query: 61  LENLTYAPMLFEVAEGLFQEGLWQAAALLYKNVSASEKYQNSERLAV 107
           ++NLTY+ +LF+ AE L+ +G  +AA ++YK V+ SEKYQ++ERL +
Sbjct: 109 MDNLTYSSLLFDTAEALYHKGNREAALIIYKKVAESEKYQHAERLGM 155


>A9U7T8.1 A9U7T8_PHYPA Predicted protein (Fragment)
          Length = 183

 Score = 96.3 bits (238), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 2   NHLERITKGMELPEDHFYSLYVDECFYYSSPTWRRLRPFLLRSAELGRLDCVEQVVQNLL 61
           N L  IT GM LPED F+S YV  C     P+ RR+ PFLLR AEL R+DC+ ++     
Sbjct: 35  NQLIAITSGMGLPEDTFFSSYVSICI--KQPSLRRVGPFLLRCAELDRMDCIGRLASAYW 92

Query: 62  ENLTYAPMLFEVAEGLFQEGLWQAAALLYKNVSASEKYQNSERLAV 107
           +N++Y   LF+ AE  + +G  +AA ++Y+ VS +EK Q+SERLA+
Sbjct: 93  DNISYVKALFDYAEEFYIQGKLKAAEVIYEMVSEAEKMQHSERLAL 138


>C0ZDG0.1 C0ZDG0_BREBN Putative DNA-binding protein
          Length = 466

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 47/81 (58%)

Query: 18  FYSLYVDECFYYSSPTWRRLRPFLLRSAELGRLDCVEQVVQNLLENLTYAPMLFEVAEGL 77
            Y LY DEC Y    +  RL P+L+RSAE GR DC+E V   LLEN     +LF VAE L
Sbjct: 72  MYELYPDECLYEGKISRPRLIPYLIRSAENGRKDCIEAVASQLLENPKNISILFTVAEQL 131

Query: 78  FQEGLWQAAALLYKNVSASEK 98
           +++G    A   Y+ V  +EK
Sbjct: 132 YEDGKLGKAVPFYEYVIENEK 152


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 618,316,273
Number of extensions: 19983840
Number of successful extensions: 43517
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 43516
Number of HSP's successfully gapped: 10
Length of query: 114
Length of database: 3,060,696,203
Length adjustment: 81
Effective length of query: 33
Effective length of database: 2,297,593,988
Effective search space: 75820601604
Effective search space used: 75820601604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)