BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0261.0008.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFK6.1 B3KFK6_9BACI Transcriptional regulator, Rrf2 family          230   4e-59
B1DIW9.1 B1DIW9_9BACL Transcriptional regulator, BadM/Rrf2 family     220   3e-56
C0ZAR1.1 C0ZAR1_BREBN Transcriptional regulator of cysteine meta...   202   8e-51
A8FFP2.1 A8FFP2_BACP2 Possible transcriptional regulator              189   8e-47
B4ALV1.1 B4ALV1_BACPU YrzC                                            187   2e-46

>B3KFK6.1 B3KFK6_9BACI Transcriptional regulator, Rrf2 family
          Length = 184

 Score =  230 bits (586), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/126 (88%), Positives = 118/126 (93%)

Query: 1   MMELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGT 60
           MMELA KFGEGPTSLKSIAEKN LSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSR+  +
Sbjct: 59  MMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSRDPAS 118

Query: 61  ITAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESHAD 120
           ITAGD+IRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIA+VLDSTTL  LIN+ E+S AD
Sbjct: 119 ITAGDVIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIAEVLDSTTLDYLINYHEQSAAD 178

Query: 121 NYMFYI 126
           NYMFYI
Sbjct: 179 NYMFYI 184


>B1DIW9.1 B1DIW9_9BACL Transcriptional regulator, BadM/Rrf2 family
          Length = 139

 Score =  220 bits (560), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 116/126 (92%)

Query: 1   MMELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGT 60
           MMELA KFGEGP SLKSIAE+N LSEHYLEQL+APLRNAGLVKSIRGAYGGYILS+E  T
Sbjct: 14  MMELAGKFGEGPISLKSIAERNQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSKEPET 73

Query: 61  ITAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESHAD 120
           ITAGD+IR+LEGPISPVDFTEEDDPAKRDLWLRIRDSIA VLD TTL+DL+N+++   AD
Sbjct: 74  ITAGDVIRILEGPISPVDFTEEDDPAKRDLWLRIRDSIASVLDQTTLADLVNYQDAGVAD 133

Query: 121 NYMFYI 126
           +YMFYI
Sbjct: 134 SYMFYI 139


>C0ZAR1.1 C0ZAR1_BREBN Transcriptional regulator of cysteine metabolism
          Length = 139

 Score =  202 bits (514), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 114/126 (90%)

Query: 1   MMELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGT 60
           MMELA + GEGPTSL+SIA+K+ LSEHYLEQLIAPLRNAGLVKSIRGAYGGY+L+++   
Sbjct: 14  MMELANRCGEGPTSLRSIAQKHDLSEHYLEQLIAPLRNAGLVKSIRGAYGGYVLAKQPDE 73

Query: 61  ITAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESHAD 120
           I+AGD+IRVLEGPISPV+F EE+DPAKR LWLRIRDSI+ VLDST+L DLI+F+++  AD
Sbjct: 74  ISAGDVIRVLEGPISPVEFAEEEDPAKRFLWLRIRDSISSVLDSTSLQDLISFEDDGPAD 133

Query: 121 NYMFYI 126
           NYMFYI
Sbjct: 134 NYMFYI 139


>A8FFP2.1 A8FFP2_BACP2 Possible transcriptional regulator
          Length = 139

 Score =  189 bits (479), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 107/126 (84%)

Query: 1   MMELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGT 60
           M+ELA K GEGPTSLKSIA+ N LSEHYLEQL++PLRNA LVKSIRGAYGGY+L+ E   
Sbjct: 14  MIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRGAYGGYVLAHEPNE 73

Query: 61  ITAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESHAD 120
           ITAGDIIRVLEGPISPV+  E ++PAKR+LW+RIRD++ DVLD+TTL DL ++ ++ + D
Sbjct: 74  ITAGDIIRVLEGPISPVEVIENEEPAKRELWIRIRDAVKDVLDNTTLEDLASYTDDGNQD 133

Query: 121 NYMFYI 126
            YMFYI
Sbjct: 134 AYMFYI 139


>B4ALV1.1 B4ALV1_BACPU YrzC
          Length = 164

 Score =  187 bits (476), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 106/126 (84%)

Query: 1   MMELALKFGEGPTSLKSIAEKNGLSEHYLEQLIAPLRNAGLVKSIRGAYGGYILSREAGT 60
           M+ELA K GEGPTSLKSIA+ N LSEHYLEQL++PLRNA LVKSIRGAYGGY+L+ E   
Sbjct: 39  MIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRGAYGGYVLAHEPNE 98

Query: 61  ITAGDIIRVLEGPISPVDFTEEDDPAKRDLWLRIRDSIADVLDSTTLSDLINFKEESHAD 120
           ITAGDIIRVLEGPISPV+  E ++PAKR LW+RIRD++ DVLD+TTL DL ++K++   +
Sbjct: 99  ITAGDIIRVLEGPISPVEVIENEEPAKRALWIRIRDAVKDVLDNTTLEDLASYKDDEDQE 158

Query: 121 NYMFYI 126
            YMFYI
Sbjct: 159 AYMFYI 164


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 755,361,949
Number of extensions: 29090349
Number of successful extensions: 91749
Number of sequences better than 1.0e-05: 1227
Number of HSP's gapped: 91180
Number of HSP's successfully gapped: 1227
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)