BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0261.0004.p (434 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFK1.1 B3KFK1_9BACI AAA ATPase central domain protein 766 0.0 B1DIY1.1 B1DIY1_9BACL AAA ATPase central domain protein 692 0.0 B8CXD4.1 B8CXD4_HALOH AAA ATPase central domain protein 446 e-123 B1I683.1 B1I683_DESAP AAA ATPase, central domain protein 440 e-121 Q24US5.1 Q24US5_DESHY Putative uncharacterized protein 438 e-121 >B3KFK1.1 B3KFK1_9BACI AAA ATPase central domain protein Length = 435 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/433 (84%), Positives = 397/433 (91%), Gaps = 1/433 (0%) Query: 1 MDLFSFG-EDTAGGRLLADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPP 59 MDLFS G E RLLADRMRP +LDEYIGQEHI+GPGKLLRRAIEADQVSSILLYGPP Sbjct: 1 MDLFSIGREGDRNSRLLADRMRPSSLDEYIGQEHIIGPGKLLRRAIEADQVSSILLYGPP 60 Query: 60 GCGKTTLAHIISHHTQGEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRF 119 GCGKTTLAHIIS T+G FVRLNAVEA+VKDVREVIE+AQSN+SLYG+KTILFLDEVHRF Sbjct: 61 GCGKTTLAHIISQQTKGHFVRLNAVEATVKDVREVIEQAQSNRSLYGTKTILFLDEVHRF 120 Query: 120 NSSRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRAL 179 NSSRQDALLPAVE GTIIFIGATTENPFHYVNGALMSRSTLFQL+ LT +HS++AMRRAL Sbjct: 121 NSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSRSTLFQLQPLTKDHSMIAMRRAL 180 Query: 180 ADEKRGLGFMQLQADEEALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAE 239 D+ +GLGFM L+ADEEAL+HIA MANGDIRRALNALELAAMTT P+ G+VHITL VAE Sbjct: 181 IDQDKGLGFMDLKADEEALEHIAAMANGDIRRALNALELAAMTTPPDSTGTVHITLEVAE 240 Query: 240 ESIRRPIVKADESTQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMDPMTFIRRLIAASS 299 ESIRRP V+ADESTQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMDPM FIRRLIAASS Sbjct: 241 ESIRRPTVRADESTQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMDPMVFIRRLIAASS 300 Query: 300 EDIGLANPQAMVQAVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMDSI 359 EDIGLANPQAMVQAVSAL+AYRNNGWPEAKLNIAQAILFAVESPKS+ VV AISRAM ++ Sbjct: 301 EDIGLANPQAMVQAVSALDAYRNNGWPEAKLNIAQAILFAVESPKSDGVVSAISRAMSAM 360 Query: 360 EELKSAEVPLHLRDTHYKGSAALGHEGYQYPHNFPGHYVKQEYLPKAISRREFYQATEQG 419 +E+KSAEVPLHLRD HY G+ LGH GY+YPH++PGHYVKQEYLPK +SRR FYQATEQG Sbjct: 361 DEVKSAEVPLHLRDAHYSGAVKLGHVGYKYPHDYPGHYVKQEYLPKELSRRVFYQATEQG 420 Query: 420 NEAKIRHNQGLRR 432 NEAKI HNQ LRR Sbjct: 421 NEAKIAHNQRLRR 433 >B1DIY1.1 B1DIY1_9BACL AAA ATPase central domain protein Length = 436 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/433 (77%), Positives = 373/433 (86%), Gaps = 1/433 (0%) Query: 1 MDLFSFGE-DTAGGRLLADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPP 59 MDLFS+ E +T RLLADRMRPE LD+YIGQEHI+G GKLLRRAIE DQVSSILLYGPP Sbjct: 1 MDLFSYQEAETPRARLLADRMRPETLDDYIGQEHIIGAGKLLRRAIEGDQVSSILLYGPP 60 Query: 60 GCGKTTLAHIISHHTQGEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRF 119 GCGKTTLA+IIS T GEFV+LNAV+ASVKDVREVI+ A++NK +YG KTILFLDEVHRF Sbjct: 61 GCGKTTLANIISKRTAGEFVKLNAVDASVKDVREVIDTAKTNKLMYGKKTILFLDEVHRF 120 Query: 120 NSSRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRAL 179 N+SRQDALLPAVE+G IIFIGATTENPFH+VNGAL+SRSTLFQLE L +H+L AM+RAL Sbjct: 121 NTSRQDALLPAVEQGIIIFIGATTENPFHHVNGALLSRSTLFQLEPLNEKHALEAMKRAL 180 Query: 180 ADEKRGLGFMQLQADEEALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAE 239 D+ RGLGFM L A+EEALQHIA MA GDIRRALNALELAA+TT EPDGSV IT+ VA+ Sbjct: 181 TDKDRGLGFMTLHAEEEALQHIAAMAGGDIRRALNALELAAVTTPSEPDGSVRITMEVAQ 240 Query: 240 ESIRRPIVKADESTQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMDPMTFIRRLIAASS 299 ESIR+P V+AD STQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMDPMTF+RRLI A S Sbjct: 241 ESIRKPTVRADTSTQYDVLSAFHKSIRGSSDAALFWFLYAVEKLGMDPMTFLRRLIVACS 300 Query: 300 EDIGLANPQAMVQAVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMDSI 359 EDIGLANPQAMVQAV+A++AY GWPEAK NIAQAILFAVESPKSNA +AI +AM I Sbjct: 301 EDIGLANPQAMVQAVTAMDAYHKIGWPEAKYNIAQAILFAVESPKSNAAAVAIGKAMSVI 360 Query: 360 EELKSAEVPLHLRDTHYKGSAALGHEGYQYPHNFPGHYVKQEYLPKAISRREFYQATEQG 419 E AEVPLHLRDTHYKG+ LGHEGY+YPH++PGHYV Q+YLP + Y+ATEQG Sbjct: 361 EGAGQAEVPLHLRDTHYKGAQQLGHEGYKYPHDYPGHYVNQQYLPDNLKGVTIYKATEQG 420 Query: 420 NEAKIRHNQGLRR 432 E KIR NQ LR+ Sbjct: 421 MEGKIRQNQELRQ 433 >B8CXD4.1 B8CXD4_HALOH AAA ATPase central domain protein Length = 450 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/423 (50%), Positives = 300/423 (70%), Gaps = 5/423 (1%) Query: 8 EDTAGGRLLADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPPGCGKTTLA 67 E R LA RMRP NLDE+ GQE ++GPGK LRRAIEAD+V S++LYGPPGCGKT+LA Sbjct: 12 ESNDKNRPLAYRMRPGNLDEFYGQEDVIGPGKPLRRAIEADRVQSLILYGPPGCGKTSLA 71 Query: 68 HIISHHTQGEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRFNSSRQDAL 127 +I+ T+G+F+R+NAV + V +REVI++A N+SL+G KTILF+DE+HRFN S+QDAL Sbjct: 72 QVIARKTEGKFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILFIDEIHRFNKSQQDAL 131 Query: 128 LPAVEKGTIIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRALADEKRGLG 187 LPAVE GTI IGATTENP+ VN L+SRS + +L+ L E + ++ AL +E+RGLG Sbjct: 132 LPAVESGTITLIGATTENPYFEVNSPLLSRSRIVRLKPLKKEDIIKILKNALNNEERGLG 191 Query: 188 FMQLQADEEALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAEESIRRPIV 247 + ++ALQ++A +A GD R ALN LE+A +TT P+ +G +HI + ES+++ ++ Sbjct: 192 NYNIDISQDALQYLASIAGGDARTALNGLEIAVLTTPPDKEGIIHINKNIISESLQKKLL 251 Query: 248 KADE--STQYDVLSAFHKSIRGSS-DAALFWFLYAVEKLGMDPMTFIRRLIAASSEDIGL 304 K D+ YDV+SAF KS+RGS DAALFW +E G DP RR+I ++ED+G+ Sbjct: 252 KYDKQGDNHYDVVSAFIKSMRGSDPDAALFWLARMLES-GEDPRFIARRIIVHAAEDVGM 310 Query: 305 ANPQAMVQAVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMDSIEELKS 364 A+P A+V A SA A G PEA++ +A+A+++ +PKSN+V+ I A++ ++ + Sbjct: 311 ADPMALVVATSAANAVEYVGLPEARIPLAEAVIYIATAPKSNSVITGIDAALNYVKNNDT 370 Query: 365 AEVPLHLRDTHYKGSAALGHE-GYQYPHNFPGHYVKQEYLPKAISRREFYQATEQGNEAK 423 EVPLHLRD HYKG+ L H GY+YPH++P HYVKQ+Y+P ++ EFY+ +QG E K Sbjct: 371 GEVPLHLRDAHYKGARNLKHGLGYKYPHDYPYHYVKQQYVPDEVTGTEFYKPGQQGREKK 430 Query: 424 IRH 426 I+ Sbjct: 431 IKQ 433 >B1I683.1 B1I683_DESAP AAA ATPase, central domain protein Length = 435 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/428 (53%), Positives = 293/428 (68%), Gaps = 10/428 (2%) Query: 2 DLFSFGEDTAGGRLLADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPPGC 61 DLFS + R LADRMRP LDE+ GQEHIVGPGKLLRRAIE+D + SI+LYGPPG Sbjct: 10 DLFSPVLENGPHRPLADRMRPRELDEFTGQEHIVGPGKLLRRAIESDLLGSIILYGPPGS 69 Query: 62 GKTTLAHIISHHTQGEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRFNS 121 GKTTLAHIIS T+ F ++AV + VK++R+VIE A + +G KTILF+DE H FN Sbjct: 70 GKTTLAHIISRTTKSNFRTVSAVSSGVKELRQVIEAAADSLKFHGRKTILFVDECHAFNK 129 Query: 122 SRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRALAD 181 S+QD LLP +EKG + FIG TTENP+ + GAL+SRS +F+LE L++E +RRALAD Sbjct: 130 SQQDVLLPGIEKGIVTFIGGTTENPYFEMRGALLSRSRIFRLEELSTEDLESILRRALAD 189 Query: 182 EKRGLGFMQLQADEEALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAEES 241 +RGLG + + EAL H+ +A GD R ALNALELA M+T P PDG I LA A++S Sbjct: 190 RERGLGEYPAEVEPEALAHLVGVAGGDARSALNALELAVMSTPPGPDGIRRINLATAQDS 249 Query: 242 IRRPIVKADES--TQYDVLSAFHKSIRGSS-DAALFWF---LYAVEKLGMDPMTFIRRLI 295 I++ V+ D++ YDV+SAF KSIRGS DAAL W+ YA G D +RRLI Sbjct: 250 IQKRAVRYDQAGDQHYDVISAFIKSIRGSDPDAALHWYARMTYA----GEDQRFIMRRLI 305 Query: 296 AASSEDIGLANPQAMVQAVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRA 355 +SEDIGLA+P+AM+ A +A A G PEA++ +AQ I++ +PKSN+ AI A Sbjct: 306 ILASEDIGLADPRAMLIAHAAWNALETVGMPEARIPVAQCIIYLALAPKSNSAYRAIEAA 365 Query: 356 MDSIEELKSAEVPLHLRDTHYKGSAALGHEGYQYPHNFPGHYVKQEYLPKAISRREFYQA 415 +D + E VP HLRDTHY G+A LGH GY YPH+ PGHYV Q+YLP + R++Y+ Sbjct: 366 LDDVREKSPGPVPPHLRDTHYPGAAKLGHTGYLYPHDHPGHYVDQQYLPDKLKGRKYYRP 425 Query: 416 TEQGNEAK 423 + QG E K Sbjct: 426 SGQGMERK 433 >Q24US5.1 Q24US5_DESHY Putative uncharacterized protein Length = 440 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 226/433 (52%), Positives = 302/433 (69%), Gaps = 9/433 (2%) Query: 1 MDLFSFGEDTAGGRLLADRMRPENLDEYIGQEHIVGPGKLLRRAIEADQVSSILLYGPPG 60 MDLFS + LA+RMRP LD+YIGQ I+G GKLLRRAIEAD+V+S++LYGPPG Sbjct: 4 MDLFSASFNPHQIAPLAERMRPRTLDDYIGQSEIIGKGKLLRRAIEADRVTSLILYGPPG 63 Query: 61 CGKTTLAHIISHHTQGEFVRLNAVEASVKDVREVIERAQSNKSLYGSKTILFLDEVHRFN 120 GKT+LA +I++ T FVR+NAV A VK++RE+I+ A LYG KT++F DEVHRFN Sbjct: 64 TGKTSLAQVIANTTSSGFVRINAVAAGVKEIREIIQTATEQLHLYGKKTLVFCDEVHRFN 123 Query: 121 SSRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSRSTLFQLESLTSEHSLVAMRRALA 180 +QDALLPAVE GTI FIGATTENPF +N AL+SRSTLF+L+ LT+E + +ALA Sbjct: 124 KGQQDALLPAVENGTITFIGATTENPFFELNSALLSRSTLFRLQPLTAEDIRSGLAQALA 183 Query: 181 DEKRGLGFMQLQADEEALQHIADMANGDIRRALNALELAAMTTAPEPDGSVHITLAVAEE 240 D++RGLG + D EA +H + ANGD+RRALNALELA +TT PE G ITL+VAEE Sbjct: 184 DKERGLGNYSVSIDPEAWEHWLNFANGDLRRALNALELAVLTTPPE-QGVRRITLSVAEE 242 Query: 241 SIRRPIVKADES--TQYDVLSAFHKSIRGSS-DAALFWFLYAVEKLGMDPMTFIRRLIAA 297 SI++ ++ D++ YD++SAF KS+RGS DAAL+W +E G DP +RR+I Sbjct: 243 SIQQRAMRFDKNGDNHYDIVSAFIKSMRGSDPDAALYWLAVLLES-GEDPRFIVRRIIVH 301 Query: 298 SSEDIGLANPQAMVQAVSALEAYRNNGWPEAKLNIAQAILFAVESPKSNAVVMAISRAMD 357 +SED+GLA+P M+QA +A A G PEA++ IAQA+L +PKSN+ +MAI RA Sbjct: 302 ASEDVGLADPMVMIQAHAAANALEWVGLPEARIPIAQAVLAIATAPKSNSTIMAIDRATG 361 Query: 358 SIEELKSAEVPLHLRDTHYKGSAALGH-EGYQYPHNFPGHYVKQEYLPKAISRREFYQAT 416 + + +VP HLRD +Y G+ +GH + Y YPH++PGH+V+Q YLP+ + F+ + Sbjct: 362 YVRSHPTGQVPAHLRDANYPGAKKMGHGKNYLYPHDYPGHWVEQGYLPQEVQGENFFTPS 421 Query: 417 EQGNEAKIRHNQG 429 G + R N+G Sbjct: 422 GTGQD---RDNRG 431 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,398,409,716 Number of extensions: 93844061 Number of successful extensions: 433843 Number of sequences better than 1.0e-05: 3924 Number of HSP's gapped: 428646 Number of HSP's successfully gapped: 3946 Length of query: 434 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 295 Effective length of database: 1,751,175,118 Effective search space: 516596659810 Effective search space used: 516596659810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)