BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0261.0003.p
         (93 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJG7.1 B3KJG7_9BACI Putative uncharacterized protein                105   1e-21
B1DIM8.1 B1DIM8_9BACL Putative uncharacterized protein                 96   8e-19
B1RRA4.1 B1RRA4_CLOPE Putative uncharacterized protein                 96   9e-19
Q8XMF1.1 Q8XMF1_CLOPE Putative uncharacterized protein CPE0738         95   2e-18
Q0SV05.1 Q0SV05_CLOPS Putative uncharacterized protein                 95   2e-18

>B3KJG7.1 B3KJG7_9BACI Putative uncharacterized protein
          Length = 93

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 68/85 (80%)

Query: 3  YVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSHSS 62
          Y NG++VLPP LL+++Q YI GELLYIPK++EQR  WGE SGS+Q I SRN+E++ ++  
Sbjct: 4  YKNGREVLPPELLQQIQQYIDGELLYIPKQSEQRAGWGELSGSKQRIESRNKEMYRAYCK 63

Query: 63 GCSVNELQKRYHLSEESIRKIISKM 87
          G S+ EL++ Y LS ES+RKIISK+
Sbjct: 64 GRSIEELERTYFLSGESVRKIISKL 88


>B1DIM8.1 B1DIM8_9BACL Putative uncharacterized protein
          Length = 98

 Score = 96.3 bits (238), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 61/84 (72%)

Query: 3  YVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSHSS 62
          Y NGKDVLPP LL ++Q YI GELLYIPK++E+R  WG+ SG++  I  RN EI+  +  
Sbjct: 4  YKNGKDVLPPTLLRQIQQYIDGELLYIPKQSEERAGWGQLSGTKARINDRNGEIYAEYCK 63

Query: 63 GCSVNELQKRYHLSEESIRKIISK 86
          G S+ +L++ Y LS +S+RKII K
Sbjct: 64 GRSIADLERVYFLSGDSLRKIICK 87


>B1RRA4.1 B1RRA4_CLOPE Putative uncharacterized protein
          Length = 92

 Score = 95.9 bits (237), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 59/85 (69%)

Query: 1  VSYVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSH 60
          + YV  +DVLP  ++E LQ Y+ G+ LYIP+K E +  WGENSG R+ + +RN EIF  +
Sbjct: 1  MKYVKAQDVLPEEIIEILQKYVDGKYLYIPRKNENQKAWGENSGIRKSLNARNTEIFKKY 60

Query: 61 SSGCSVNELQKRYHLSEESIRKIIS 85
            G S+N L K Y LSE+SIRKIIS
Sbjct: 61 KDGTSINTLAKEYFLSEKSIRKIIS 85


>Q8XMF1.1 Q8XMF1_CLOPE Putative uncharacterized protein CPE0738
          Length = 92

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query: 1  VSYVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSH 60
          + YV  +DVLP  ++E LQ Y+ G+ LYIP+K E +  WGENSG R+ + +RN EIF  +
Sbjct: 1  MKYVKAQDVLPEEIIEILQKYVDGKYLYIPRKNENQKAWGENSGIRKSLNARNTEIFKKY 60

Query: 61 SSGCSVNELQKRYHLSEESIRKIIS 85
            G S+N L K Y LSE+SIR+IIS
Sbjct: 61 KDGTSINTLAKEYFLSEKSIRRIIS 85


>Q0SV05.1 Q0SV05_CLOPS Putative uncharacterized protein
          Length = 92

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query: 1  VSYVNGKDVLPPGLLEELQGYIQGELLYIPKKTEQRVKWGENSGSRQEIASRNEEIFCSH 60
          + YV  +DVLP  ++E LQ Y+ G+ LYIP+K E +  WGENSG R+ + +RN EIF  +
Sbjct: 1  MKYVKAQDVLPEEIIEILQKYVDGKYLYIPRKNENQKAWGENSGIRKSLNARNTEIFKKY 60

Query: 61 SSGCSVNELQKRYHLSEESIRKIIS 85
            G S+N L K Y LSE+SIR+IIS
Sbjct: 61 KDGTSINTLAKEYFLSEKSIRRIIS 85


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 533,091,901
Number of extensions: 18779600
Number of successful extensions: 36787
Number of sequences better than 1.0e-05: 174
Number of HSP's gapped: 36778
Number of HSP's successfully gapped: 174
Length of query: 93
Length of database: 3,060,696,203
Length adjustment: 62
Effective length of query: 31
Effective length of database: 2,476,593,273
Effective search space: 76774391463
Effective search space used: 76774391463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)