BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0261.0002.p (590 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2PA43.1 C2PA43_BACCE Methyl-accepting chemotaxis protein 310 4e-82 Q81I60.1 Q81I60_BACCR Methyl-accepting chemotaxis protein 303 3e-80 C2U929.1 C2U929_BACCE Methyl-accepting chemotaxis protein 303 3e-80 C2SW18.1 C2SW18_BACCE Methyl-accepting chemotaxis protein 303 3e-80 C2Y5T3.1 C2Y5T3_BACCE Methyl-accepting chemotaxis protein 303 3e-80 >C2PA43.1 C2PA43_BACCE Methyl-accepting chemotaxis protein Length = 695 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 189/584 (32%), Positives = 311/584 (53%), Gaps = 14/584 (2%) Query: 3 FIITAIVIPSLALAVISSETSKTELRSKMEDTTNSSIHILDKTLTQLIQLESASVN---- 58 F+I +++PS+ + S + +KT + + +I ILD + + +L+S V+ Sbjct: 56 FVII-LILPSIVIGWTSYQQAKTNFNETISQSAKDNIKILDNVINK--ELDSKKVDAVYF 112 Query: 59 -ELADQISAADVTSGSARVRKLIDKFKAEHPEIDIVSLGNTDGKFMLSPTSDQKD-YDPR 116 +L Q S T ++ ++++ HPE++ + G+++G+F+ SP+ + Y+P Sbjct: 113 TKLFTQSSYQ--TDQIQNIQNKLEEYNKLHPELEAIYTGSSNGQFIQSPSIQMPEGYNPT 170 Query: 117 VRDWYIDALKFPESASVIDPIFSKVTGSYIMPISRAFPDGKGAISVSLSMNGLMELAKTV 176 RDWY +A+K + P SK TG+ ++ I++ D G + + L +N ++ +K V Sbjct: 171 ERDWYKEAVKKSGEVIITAPYKSKTTGNIVITIAKQNEDKSGVLGIDLIINDIVNTSKMV 230 Query: 177 SLGSSGYAYILDSQNKVIYHPAMEVATPVTGALLDALSAAPMGKVSYKDTTADMQMAGYY 236 ++G SGY I D V+ HP M+ V L L G +++ D + + Sbjct: 231 NIGKSGYVAIFDQDKNVVAHPTMKPGDKVEEKLEKELYKQETGDFNFRLDGEDRHIT--F 288 Query: 237 VTNELSGFKIVGVLPADEYTRAVYPILYKSXXXXXXXXXXXXXXXXXXXRRITAPLEALN 296 TN+++G+KI G++PA E A PI YK+ I PL+ L Sbjct: 289 KTNKITGWKIAGIMPAKEIIEAAEPIFYKTITVIGISLIIGGILIYFIIASIINPLKQLV 348 Query: 297 RSAKRVSEGQLDESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETSGHLAAASEQLTA 356 S+K++SEG L ES+T KDEIG+L ++N M SL+ ++ +++ ++GH+AA+SE+LTA Sbjct: 349 ISSKKISEGDLTESITVHSKDEIGQLGESFNEMAASLQNVISNINTSAGHVAASSEELTA 408 Query: 357 STGENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXXXXXXXXXXXXLL 416 S + S+A E +T+ IE + G ++E++E I + + Sbjct: 409 SMKQTSEATEQITQAIEQVSSGAEIQTKEVEEGATLLEEVTEGIQRVADSSSLVSTASMY 468 Query: 417 TEKDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETSTAIASIAKQTNLL 476 T+K +G V+ NQMQ IH SV QS ++I L+ S ++ I IA+QTNLL Sbjct: 469 TKKKAEDGGKLVEQTVNQMQLIHKSVSQSDKVIVLLDDKSKQIGAILEVIQHIAEQTNLL 528 Query: 477 SLNAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVGLIASVYDVMRHQ 536 +LNA IEAARAGE GRGFA+VA EVRKL+E S S+ EI + + E+ I M+ Q Sbjct: 529 ALNAAIEAARAGEQGRGFAIVADEVRKLAEQSGQSSTEIGKLVKEIQFDIKETVSSMK-Q 587 Query: 537 VVADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMS 580 V +V+ G+ +A E ++F +I +ST QI + + EQM+ Sbjct: 588 VGTEVQSGLVVANETKQSFAEILKSTDDTVVQIDSMVEVAEQMT 631 >Q81I60.1 Q81I60_BACCR Methyl-accepting chemotaxis protein Length = 658 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 190/591 (32%), Positives = 307/591 (51%), Gaps = 28/591 (4%) Query: 3 FIITAIVIPSLALAVISSETSKTELRSKMEDTTNSSIHILDKTLTQLIQLESASVNEL-- 60 FII +V+PS+ + S + +KT + ++ +I ILD + + +L+S V+ Sbjct: 19 FIII-LVLPSIVIGWTSYQQAKTNFNETILNSAKDNIKILDNVINK--ELDSKKVDATYF 75 Query: 61 ----------ADQISAADVTSGSARVRKLIDKFKAEHPEIDIVSLGNTDGKFMLSPTSDQ 110 ADQI ++ ++++ HPE++ + G+++G+F+ SP Sbjct: 76 TKLFTQSSYQADQIQ---------NIQNKLEEYNKLHPEMEAIYTGSSNGQFIQSPAIQM 126 Query: 111 KD-YDPRVRDWYIDALKFPESASVIDPIFSKVTGSYIMPISRAFPDGKGAISVSLSMNGL 169 D Y+P RDWY +A+K V P SK TG+ ++ +++ D G + + L +N + Sbjct: 127 PDGYNPTERDWYKEAVKKSGEVIVTAPYKSKTTGNIVITLAKQNEDKSGVLGIDLIINNI 186 Query: 170 MELAKTVSLGSSGYAYILDSQNKVIYHPAMEVATPVTGALLDALSAAPMGKVSYKDTTAD 229 + +K V++G GY I D V+ HP M+ + L L G Y D Sbjct: 187 VTTSKMVNIGKEGYVAIFDQDKNVVAHPKMKPGEKLEEKLSKELYKQEAGDFHYSLDGED 246 Query: 230 MQMAGYYVTNELSGFKIVGVLPADEYTRAVYPILYKSXXXXXXXXXXXXXXXXXXXRRIT 289 + + TN+ +G+KI G++P+ E A PI YK+ I Sbjct: 247 RNIT--FKTNKKTGWKIAGIMPSKEIIEAAEPIFYKTVTVLGISLIIGGIVIYFIIASII 304 Query: 290 APLEALNRSAKRVSEGQLDESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETSGHLAA 349 PL+ L S+K++SEG L ES+T KDEIG+L ++N M SL++++ +++ ++ H+AA Sbjct: 305 KPLKQLVISSKKISEGDLTESITVHSKDEIGQLGESFNEMAASLQSVISNINTSASHVAA 364 Query: 350 ASEQLTASTGENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXXXXXXX 409 +SE+LTAS + S+A E +T+ IE + G ++E++E I + Sbjct: 365 SSEELTASMKQTSEATEQITQAIEQVSSGAEIQTKEVEEGATLLEEVTEGIQRVADSSSL 424 Query: 410 XXXXXLLTEKDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETSTAIASI 469 + T+K NG V+ NQMQ IH SV QS ++I L+ S ++ I I Sbjct: 425 VSTASMYTKKKAENGGKLVEQTVNQMQLIHESVSQSDKIIGLLDDKSKQIGAILEVIQHI 484 Query: 470 AKQTNLLSLNAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVGLIASV 529 A+QTNLL+LNA IEAARAGE GRGFA+VA EVRKL+E S S+ EI + + E+ I Sbjct: 485 AEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSGQSSTEIGKLVKEIQFDIKET 544 Query: 530 YDVMRHQVVADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMS 580 M +QV A+V+ G+ +A E ++F +I +ST QI + + +QM+ Sbjct: 545 VSSM-NQVGAEVQSGLVVANETKQSFAEILKSTNDTVVQIDSMVDVAKQMT 594 >C2U929.1 C2U929_BACCE Methyl-accepting chemotaxis protein Length = 658 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 190/591 (32%), Positives = 307/591 (51%), Gaps = 28/591 (4%) Query: 3 FIITAIVIPSLALAVISSETSKTELRSKMEDTTNSSIHILDKTLTQLIQLESASVNEL-- 60 FII +V+PS+ + S + +KT + ++ +I ILD + + +L+S V+ Sbjct: 19 FIII-LVLPSIVIGWTSYQQAKTNFNETILNSAKDNIKILDNVINK--ELDSKKVDATYF 75 Query: 61 ----------ADQISAADVTSGSARVRKLIDKFKAEHPEIDIVSLGNTDGKFMLSPTSDQ 110 ADQI ++ ++++ HPE++ + G+++G+F+ SP Sbjct: 76 TKLFTQSSYQADQIQ---------NIQNKLEEYNKLHPEMEAIYTGSSNGQFIQSPAIQM 126 Query: 111 KD-YDPRVRDWYIDALKFPESASVIDPIFSKVTGSYIMPISRAFPDGKGAISVSLSMNGL 169 D Y+P RDWY +A+K V P SK TG+ ++ +++ D G + + L +N + Sbjct: 127 PDGYNPTERDWYKEAVKKSGEVIVTAPYKSKTTGNIVITLAKQNEDKSGVLGIDLIINNI 186 Query: 170 MELAKTVSLGSSGYAYILDSQNKVIYHPAMEVATPVTGALLDALSAAPMGKVSYKDTTAD 229 + +K V++G GY I D V+ HP M+ + L L G Y D Sbjct: 187 VTTSKMVNIGKEGYVAIFDQDKNVVAHPKMKPGEKLEEKLSKELYKQEAGDFHYSLDGED 246 Query: 230 MQMAGYYVTNELSGFKIVGVLPADEYTRAVYPILYKSXXXXXXXXXXXXXXXXXXXRRIT 289 + + TN+ +G+KI G++P+ E A PI YK+ I Sbjct: 247 RNIT--FKTNKKTGWKIAGIMPSKEIIEAAEPIFYKTVTVLGISLIIGGIVIYFIIASII 304 Query: 290 APLEALNRSAKRVSEGQLDESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETSGHLAA 349 PL+ L S+K++SEG L ES+T KDEIG+L ++N M SL++++ +++ ++ H+AA Sbjct: 305 KPLKQLVISSKKISEGDLTESITVHSKDEIGQLGESFNEMAASLQSVISNINTSASHVAA 364 Query: 350 ASEQLTASTGENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXXXXXXX 409 +SE+LTAS + S+A E +T+ IE + G ++E++E I + Sbjct: 365 SSEELTASMKQTSEATEQITQAIEQVSSGAEIQTKEVEEGATLLEEVTEGIQRVADSSSL 424 Query: 410 XXXXXLLTEKDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETSTAIASI 469 + T+K NG V+ NQMQ IH SV QS ++I L+ S ++ I I Sbjct: 425 VSTASMYTKKKAENGGKLVEQTVNQMQLIHESVSQSDKIIGLLDDKSKQIGAILEVIQHI 484 Query: 470 AKQTNLLSLNAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVGLIASV 529 A+QTNLL+LNA IEAARAGE GRGFA+VA EVRKL+E S S+ EI + + E+ I Sbjct: 485 AEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSGQSSTEIGKLVKEIQFDIKET 544 Query: 530 YDVMRHQVVADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMS 580 M +QV A+V+ G+ +A E ++F +I +ST QI + + +QM+ Sbjct: 545 VSSM-NQVGAEVQSGLVVANETKQSFAEILKSTNDTVVQIDSMVDVAKQMT 594 >C2SW18.1 C2SW18_BACCE Methyl-accepting chemotaxis protein Length = 658 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 190/591 (32%), Positives = 307/591 (51%), Gaps = 28/591 (4%) Query: 3 FIITAIVIPSLALAVISSETSKTELRSKMEDTTNSSIHILDKTLTQLIQLESASVNEL-- 60 FII +V+PS+ + S + +KT + ++ +I ILD + + +L+S V+ Sbjct: 19 FIII-LVLPSIVIGWTSYQQAKTNFNETILNSAKDNIKILDNVINK--ELDSKKVDATYF 75 Query: 61 ----------ADQISAADVTSGSARVRKLIDKFKAEHPEIDIVSLGNTDGKFMLSPTSDQ 110 ADQI ++ ++++ HPE++ + G+++G+F+ SP Sbjct: 76 TKLFTQSSYQADQIQ---------NIQNKLEEYNKLHPEMEAIYTGSSNGQFIQSPAIQM 126 Query: 111 KD-YDPRVRDWYIDALKFPESASVIDPIFSKVTGSYIMPISRAFPDGKGAISVSLSMNGL 169 D Y+P RDWY +A+K V P SK TG+ ++ +++ D G + + L +N + Sbjct: 127 PDGYNPTERDWYKEAVKKSGEVIVTAPYKSKTTGNIVITLAKQNEDKSGVLGIDLIINNI 186 Query: 170 MELAKTVSLGSSGYAYILDSQNKVIYHPAMEVATPVTGALLDALSAAPMGKVSYKDTTAD 229 + +K V++G GY I D V+ HP M+ + L L G Y D Sbjct: 187 VTTSKMVNIGKEGYVAIFDQDKNVVAHPKMKPGEKLEEKLSKELYKQEAGDFHYSLDGED 246 Query: 230 MQMAGYYVTNELSGFKIVGVLPADEYTRAVYPILYKSXXXXXXXXXXXXXXXXXXXRRIT 289 + + TN+ +G+KI G++P+ E A PI YK+ I Sbjct: 247 RNIT--FKTNKKTGWKIAGIMPSKEIIEAAEPIFYKTVTVLGISLIIGGIVIYFIIASII 304 Query: 290 APLEALNRSAKRVSEGQLDESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETSGHLAA 349 PL+ L S+K++SEG L ES+T KDEIG+L ++N M SL++++ +++ ++ H+AA Sbjct: 305 KPLKQLVISSKKISEGDLTESITVHSKDEIGQLGESFNEMAASLQSVISNINTSASHVAA 364 Query: 350 ASEQLTASTGENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXXXXXXX 409 +SE+LTAS + S+A E +T+ IE + G ++E++E I + Sbjct: 365 SSEELTASMKQTSEATEQITQAIEQVSSGAEIQTKEVEEGATLLEEVTEGIQRVADSSSL 424 Query: 410 XXXXXLLTEKDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETSTAIASI 469 + T+K NG V+ NQMQ IH SV QS ++I L+ S ++ I I Sbjct: 425 VSTASMYTKKKAENGGKLVEQTVNQMQLIHESVSQSDKIIGLLDDKSKQIGAILEVIQHI 484 Query: 470 AKQTNLLSLNAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVGLIASV 529 A+QTNLL+LNA IEAARAGE GRGFA+VA EVRKL+E S S+ EI + + E+ I Sbjct: 485 AEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSGQSSTEIGKLVKEIQFDIKET 544 Query: 530 YDVMRHQVVADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMS 580 M +QV A+V+ G+ +A E ++F +I +ST QI + + +QM+ Sbjct: 545 VSSM-NQVGAEVQSGLVVANETKQSFAEILKSTNDTVVQIDSMVDVAKQMT 594 >C2Y5T3.1 C2Y5T3_BACCE Methyl-accepting chemotaxis protein Length = 658 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 190/591 (32%), Positives = 307/591 (51%), Gaps = 28/591 (4%) Query: 3 FIITAIVIPSLALAVISSETSKTELRSKMEDTTNSSIHILDKTLTQLIQLESASVNEL-- 60 FII +V+PS+ + S + +KT + ++ +I ILD + + +L+S V+ Sbjct: 19 FIII-LVLPSIVIGWTSYQQAKTNFNETILNSAKDNIKILDNVINK--ELDSKKVDATYF 75 Query: 61 ----------ADQISAADVTSGSARVRKLIDKFKAEHPEIDIVSLGNTDGKFMLSPTSDQ 110 ADQI ++ ++++ HPE++ + G+++G+F+ SP Sbjct: 76 TKLFTQSSYQADQIQ---------NIQNKLEEYNKLHPEMEAIYTGSSNGQFIQSPAIQM 126 Query: 111 KD-YDPRVRDWYIDALKFPESASVIDPIFSKVTGSYIMPISRAFPDGKGAISVSLSMNGL 169 D Y+P RDWY +A+K V P SK TG+ ++ +++ D G + + L +N + Sbjct: 127 PDGYNPTERDWYKEAVKKSGEVIVTAPYKSKTTGNIVITLAKQNEDKSGVLGIDLIINNI 186 Query: 170 MELAKTVSLGSSGYAYILDSQNKVIYHPAMEVATPVTGALLDALSAAPMGKVSYKDTTAD 229 + +K V++G GY I D V+ HP M+ + L L G Y D Sbjct: 187 VTTSKMVNIGKGGYVAIFDQDKNVVAHPKMKPGEKLEEKLSKELYKQEAGDFHYSLDGED 246 Query: 230 MQMAGYYVTNELSGFKIVGVLPADEYTRAVYPILYKSXXXXXXXXXXXXXXXXXXXRRIT 289 + + TN+ +G+KI G++P+ E A PI YK+ I Sbjct: 247 RNIT--FKTNKKTGWKIAGIMPSKEIIEAAEPIFYKTVTVLGISLIIGGIVIYFIIASII 304 Query: 290 APLEALNRSAKRVSEGQLDESVTTRRKDEIGELAGNYNAMVQSLRTMVQDVSETSGHLAA 349 PL+ L S+K++SEG L ES+T KDEIG+L ++N M SL++++ +++ ++ H+AA Sbjct: 305 KPLKQLVISSKKISEGDLTESITVHSKDEIGQLGESFNEMAASLQSVISNINTSASHVAA 364 Query: 350 ASEQLTASTGENSKAVEYVTELIEDSTRGXXXXXXXXXXXXXXMDEMSEAIHKXXXXXXX 409 +SE+LTAS + S+A E +T+ IE + G ++E++E I + Sbjct: 365 SSEELTASMKQTSEATEQITQAIEQVSSGAEIQTKEVEEGATLLEEVTEGIQRVADSSSL 424 Query: 410 XXXXXLLTEKDVNNGSAKVQHVGNQMQTIHHSVQQSSRLIADLNGLSAKVAETSTAIASI 469 + T+K NG V+ NQMQ IH SV QS ++I L+ S ++ I I Sbjct: 425 VSTASMYTKKKAENGGKLVEQTVNQMQLIHESVSQSDKIIGLLDDKSKQIGAILEVIQHI 484 Query: 470 AKQTNLLSLNAGIEAARAGEHGRGFAVVAGEVRKLSEASKVSAGEIQETISEMVGLIASV 529 A+QTNLL+LNA IEAARAGE GRGFA+VA EVRKL+E S S+ EI + + E+ I Sbjct: 485 AEQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSGQSSTEIGKLVKEIQFDIKET 544 Query: 530 YDVMRHQVVADVEQGMTLALEAGEAFTQIEQSTRHVGEQIHEVSAITEQMS 580 M +QV A+V+ G+ +A E ++F +I +ST QI + + +QM+ Sbjct: 545 VSSM-NQVGAEVQSGLVVANETKQSFAEILKSTNDTVVQIDSMVDVAKQMT 594 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.126 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,638,769,808 Number of extensions: 94397280 Number of successful extensions: 312809 Number of sequences better than 1.0e-05: 12683 Number of HSP's gapped: 297847 Number of HSP's successfully gapped: 12863 Length of query: 590 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 448 Effective length of database: 1,722,912,073 Effective search space: 771864608704 Effective search space used: 771864608704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)